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Conserved domains on  [gi|1211058078|gb|ASF17358|]
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methyl-accepting chemotaxis protein [Shewanella sp. FDAARGOS_354]

Protein Classification

methyl-accepting chemotaxis protein( domain architecture ID 11435591)

methyl-accepting chemotaxis protein (MCP) is a bacterial receptor that mediates chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behavior

CATH:  1.10.287.950
Gene Ontology:  GO:0006935
PubMed:  18165013|20738376
SCOP:  4003862

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
1-495 7.31e-84

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


:

Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 268.81  E-value: 7.31e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078   1 MKNLALKVQIGLAAAIFTIVSALFGASYWLASDKLMSGEMAFEDNTVANLQVTMAQPIFTYDYEQIRAVLSVMLKSKQIY 80
Cdd:COG0840    44 ALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVVLLALLLALLLLLLALLALALAALALLAALAALLALLELLLAAL 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078  81 QITVVDHRGKLLAEDKQAEAVAVNYLQTRELQFSDQGNPTGRLTITFSILPVKAQLSELLLSYFIQALLILAgslFVIFI 160
Cdd:COG0840   124 LAALAIALLALAALLALAALALALLALALLAAAAAAAAALAALLEAAALALAAAALALALLAAALLALVALA---IILAL 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 161 ILKRLVITPLDKVVTALEEIAngDGDLSHRLPVETEDEIGKLANAFNGFVEHIHGTISRVHETSALLLGDAKALGTLSQS 240
Cdd:COG0840   201 LLSRSITRPLRELLEVLERIA--EGDLTVRIDVDSKDEIGQLADAFNRMIENLRELVGQVRESAEQVASASEELAASAEE 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 241 NNQRVQAQLKETEAAVTAVTQLSASANEVAINAKRTADAATQADRAVDDGQRQFDSGLAITRQLAAELARSAQSVSQLQQ 320
Cdd:COG0840   279 LAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAAELAEEASELAEEGGEVVEEAVEGIEEIRESVEETAETIEELGE 358

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 321 ETQRIDEVVVVISSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQQATGEIQKMIQQVQSRVAETVNVMQ 400
Cdd:COG0840   359 SSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVEAME 438

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 401 SSQTLSNEGVNRSEEIKLVLSKVTDLVSNISNMNIEVSHAAQEQTCVTEAISRTLNDLANVSGSASLDSEHLAQSSERLF 480
Cdd:COG0840   439 EGSEEVEEGVELVEEAGEALEEIVEAVEEVSDLIQEIAAASEEQSAGTEEVNQAIEQIAAAAQENAASVEEVAAAAEELA 518

                         490
                  ....*....|....*
gi 1211058078 481 HQGERLRTLVTSFRL 495
Cdd:COG0840   519 ELAEELQELVSRFKL 533
 
Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
1-495 7.31e-84

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 268.81  E-value: 7.31e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078   1 MKNLALKVQIGLAAAIFTIVSALFGASYWLASDKLMSGEMAFEDNTVANLQVTMAQPIFTYDYEQIRAVLSVMLKSKQIY 80
Cdd:COG0840    44 ALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVVLLALLLALLLLLLALLALALAALALLAALAALLALLELLLAAL 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078  81 QITVVDHRGKLLAEDKQAEAVAVNYLQTRELQFSDQGNPTGRLTITFSILPVKAQLSELLLSYFIQALLILAgslFVIFI 160
Cdd:COG0840   124 LAALAIALLALAALLALAALALALLALALLAAAAAAAAALAALLEAAALALAAAALALALLAAALLALVALA---IILAL 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 161 ILKRLVITPLDKVVTALEEIAngDGDLSHRLPVETEDEIGKLANAFNGFVEHIHGTISRVHETSALLLGDAKALGTLSQS 240
Cdd:COG0840   201 LLSRSITRPLRELLEVLERIA--EGDLTVRIDVDSKDEIGQLADAFNRMIENLRELVGQVRESAEQVASASEELAASAEE 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 241 NNQRVQAQLKETEAAVTAVTQLSASANEVAINAKRTADAATQADRAVDDGQRQFDSGLAITRQLAAELARSAQSVSQLQQ 320
Cdd:COG0840   279 LAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAAELAEEASELAEEGGEVVEEAVEGIEEIRESVEETAETIEELGE 358

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 321 ETQRIDEVVVVISSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQQATGEIQKMIQQVQSRVAETVNVMQ 400
Cdd:COG0840   359 SSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVEAME 438

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 401 SSQTLSNEGVNRSEEIKLVLSKVTDLVSNISNMNIEVSHAAQEQTCVTEAISRTLNDLANVSGSASLDSEHLAQSSERLF 480
Cdd:COG0840   439 EGSEEVEEGVELVEEAGEALEEIVEAVEEVSDLIQEIAAASEEQSAGTEEVNQAIEQIAAAAQENAASVEEVAAAAEELA 518

                         490
                  ....*....|....*
gi 1211058078 481 HQGERLRTLVTSFRL 495
Cdd:COG0840   519 ELAEELQELVSRFKL 533
MA smart00283
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ...
 238-494 3.67e-60

Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.


Pssm-ID: 214599 [Multi-domain]  Cd Length: 262  Bit Score: 198.28  E-value: 3.67e-60
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078  238 SQSNNQRVQAQLKETEAAVTAVTQLSASANEVAINAKRTADAATQADRAVDDGQRQFDSGLAITRQLAAELARSAQSVSQ 317
Cdd:smart00283   6 VEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVSAVEE 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078  318 LQQETQRIDEVVVVISSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQQATGEIQKMIQQVQSRVAETVN 397
Cdd:smart00283  86 LEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKEIQEETNEAVA 165

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078  398 VMQSSQTLSNEGVNRSEEIKLVLSKVTDLVSNISNMNIEVSHAAQEQTCVTEAISRTLNDLANVSGSASLDSEHLAQSSE 477
Cdd:smart00283 166 AMEESSSEVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEISAAAE 245

                          250
                   ....*....|....*..
gi 1211058078  478 RLFHQGERLRTLVTSFR 494
Cdd:smart00283 246 ELSGLAEELDELVERFK 262
MCP_signal cd11386
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis ...
 260-459 3.28e-52

Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.


Pssm-ID: 206779 [Multi-domain]  Cd Length: 200  Bit Score: 175.50  E-value: 3.28e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 260 TQLSASANEVAINAKRTADAATQADRAVDDGQRQFDSGLAITRQLAAELARSAQSVSQLQQETQRIDEVVVVISSIAEQT 339
Cdd:cd11386     1 EELSASIEEVAASADQVAETSQQAAELAEKGREAAEDAINQMNQIDESVDEAVSAVEELEESSAEIGEIVEVIDDIAEQT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 340 NLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQQATGEIQKMIQQVQSRVAETVNVMQSSQTLSNEGVNRSEEIKLV 419
Cdd:cd11386    81 NLLALNAAIEAARAGEAGRGFAVVADEVRKLAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRA 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1211058078 420 LSKVTDLVSNISNMNIEVSHAAQEQTCVTEAISRTLNDLA 459
Cdd:cd11386   161 FEEIVASVEEVADGIQEISAATQEQSASTQEIAAAVEEIA 200
PRK15048 PRK15048
methyl-accepting chemotaxis protein II; Provisional
 149-495 9.67e-36

methyl-accepting chemotaxis protein II; Provisional


Pssm-ID: 185008 [Multi-domain]  Cd Length: 553  Bit Score: 139.76  E-value: 9.67e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 149 LILAGSLFVIFIILKRLVITPLDKVVTALEEIANGDgdLSHRLPVETEDEIGKLANAFNGFVEHIHGTISRVHETSALLL 228
Cdd:PRK15048  199 LVVVLILLVAWYGIRRMLLTPLAKIIAHIREIAGGN--LANTLTIDGRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIY 276

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 229 GDAKALGTLSQSNNQRVQAQLKETEAAVTAVTQLSASANEVAINAKRTADAATQADRAVDDGQRQFDsGLAITRQlaaEL 308
Cdd:PRK15048  277 AGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVD-GVVKTMH---EI 352

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 309 ARSaqsvsqlqqeTQRIDEVVVVISSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQQATGEIQKMIQQV 388
Cdd:PRK15048  353 ADS----------SKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIEDS 422

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 389 QSRVAETVNVMQSSQTLSNEGVNrseeiklVLSKVTDLVSnisnmniEVSHAAQEQTCVTEAISRTLNDLANVS-GSASL 467
Cdd:PRK15048  423 VSRVDTGSVLVESAGETMNNIVN-------AVTRVTDIMG-------EIASASDEQSRGIDQVALAVSEMDRVTqQNASL 488

                         330       340
                  ....*....|....*....|....*...
gi 1211058078 468 DSEHlAQSSERLFHQGERLRTLVTSFRL 495
Cdd:PRK15048  489 VQES-AAAAAALEEQASRLTQAVSAFRL 515
MCPsignal pfam00015
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to ...
 277-462 8.43e-34

Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.


Pssm-ID: 333767 [Multi-domain]  Cd Length: 172  Bit Score: 125.62  E-value: 8.43e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 277 ADAATQADRAVDDGQRQFDSGLAITRQLAaelarsaqsvsqlqQETQRIDEVVVVISSIAEQTNLLALNAAIEAARAGEQ 356
Cdd:pfam00015   1 SDLAQLASEEAQDGGKEVANVVGQMEQIA--------------QSSKKISDIISVIDEIAFQTNLLALNAAIEAARAGEQ 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 357 GRGFAVVADEVRSLASRTQQATGEIQKMIQQVQSRVAETVNVMQSSQTLSNEGVNRSEEIKLVLSKVTDLVSNISNMNIE 436
Cdd:pfam00015  67 GRGFAVVADEVRKLAERSAQAAKEIEALIIEIQKQTNDSTASIESTRQRVEVGSTIVESTGEALKEIVDAVAEIADIVQE 146

                         170       180
                  ....*....|....*....|....*.
gi 1211058078 437 VSHAAQEQTCVTEAISRTLNDLANVS 462
Cdd:pfam00015 147 IAAASDEQSAGIDQVNQAVARMDQVT 172
 
Name Accession Description Interval E-value
Tar COG0840
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
1-495 7.31e-84

Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];


Pssm-ID: 440602 [Multi-domain]  Cd Length: 533  Bit Score: 268.81  E-value: 7.31e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078   1 MKNLALKVQIGLAAAIFTIVSALFGASYWLASDKLMSGEMAFEDNTVANLQVTMAQPIFTYDYEQIRAVLSVMLKSKQIY 80
Cdd:COG0840    44 ALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVVLLALLLALLLLLLALLALALAALALLAALAALLALLELLLAAL 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078  81 QITVVDHRGKLLAEDKQAEAVAVNYLQTRELQFSDQGNPTGRLTITFSILPVKAQLSELLLSYFIQALLILAgslFVIFI 160
Cdd:COG0840   124 LAALAIALLALAALLALAALALALLALALLAAAAAAAAALAALLEAAALALAAAALALALLAAALLALVALA---IILAL 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 161 ILKRLVITPLDKVVTALEEIAngDGDLSHRLPVETEDEIGKLANAFNGFVEHIHGTISRVHETSALLLGDAKALGTLSQS 240
Cdd:COG0840   201 LLSRSITRPLRELLEVLERIA--EGDLTVRIDVDSKDEIGQLADAFNRMIENLRELVGQVRESAEQVASASEELAASAEE 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 241 NNQRVQAQLKETEAAVTAVTQLSASANEVAINAKRTADAATQADRAVDDGQRQFDSGLAITRQLAAELARSAQSVSQLQQ 320
Cdd:COG0840   279 LAAGAEEQAASLEETAAAMEELSATVQEVAENAQQAAELAEEASELAEEGGEVVEEAVEGIEEIRESVEETAETIEELGE 358

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 321 ETQRIDEVVVVISSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQQATGEIQKMIQQVQSRVAETVNVMQ 400
Cdd:COG0840   359 SSQEIGEIVDVIDDIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAEATKEIEELIEEIQSETEEAVEAME 438

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 401 SSQTLSNEGVNRSEEIKLVLSKVTDLVSNISNMNIEVSHAAQEQTCVTEAISRTLNDLANVSGSASLDSEHLAQSSERLF 480
Cdd:COG0840   439 EGSEEVEEGVELVEEAGEALEEIVEAVEEVSDLIQEIAAASEEQSAGTEEVNQAIEQIAAAAQENAASVEEVAAAAEELA 518

                         490
                  ....*....|....*
gi 1211058078 481 HQGERLRTLVTSFRL 495
Cdd:COG0840   519 ELAEELQELVSRFKL 533
MA smart00283
Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo ...
 238-494 3.67e-60

Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.


Pssm-ID: 214599 [Multi-domain]  Cd Length: 262  Bit Score: 198.28  E-value: 3.67e-60
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078  238 SQSNNQRVQAQLKETEAAVTAVTQLSASANEVAINAKRTADAATQADRAVDDGQRQFDSGLAITRQLAAELARSAQSVSQ 317
Cdd:smart00283   6 VEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVSAVEE 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078  318 LQQETQRIDEVVVVISSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQQATGEIQKMIQQVQSRVAETVN 397
Cdd:smart00283  86 LEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKEIQEETNEAVA 165

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078  398 VMQSSQTLSNEGVNRSEEIKLVLSKVTDLVSNISNMNIEVSHAAQEQTCVTEAISRTLNDLANVSGSASLDSEHLAQSSE 477
Cdd:smart00283 166 AMEESSSEVEEGVELVEETGDALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEISAAAE 245

                          250
                   ....*....|....*..
gi 1211058078  478 RLFHQGERLRTLVTSFR 494
Cdd:smart00283 246 ELSGLAEELDELVERFK 262
MCP_signal cd11386
Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis ...
 260-459 3.28e-52

Methyl-accepting chemotaxis protein (MCP), signaling domain; Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.


Pssm-ID: 206779 [Multi-domain]  Cd Length: 200  Bit Score: 175.50  E-value: 3.28e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 260 TQLSASANEVAINAKRTADAATQADRAVDDGQRQFDSGLAITRQLAAELARSAQSVSQLQQETQRIDEVVVVISSIAEQT 339
Cdd:cd11386     1 EELSASIEEVAASADQVAETSQQAAELAEKGREAAEDAINQMNQIDESVDEAVSAVEELEESSAEIGEIVEVIDDIAEQT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 340 NLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQQATGEIQKMIQQVQSRVAETVNVMQSSQTLSNEGVNRSEEIKLV 419
Cdd:cd11386    81 NLLALNAAIEAARAGEAGRGFAVVADEVRKLAEESAEAAKEIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRA 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1211058078 420 LSKVTDLVSNISNMNIEVSHAAQEQTCVTEAISRTLNDLA 459
Cdd:cd11386   161 FEEIVASVEEVADGIQEISAATQEQSASTQEIAAAVEEIA 200
PRK15048 PRK15048
methyl-accepting chemotaxis protein II; Provisional
 149-495 9.67e-36

methyl-accepting chemotaxis protein II; Provisional


Pssm-ID: 185008 [Multi-domain]  Cd Length: 553  Bit Score: 139.76  E-value: 9.67e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 149 LILAGSLFVIFIILKRLVITPLDKVVTALEEIANGDgdLSHRLPVETEDEIGKLANAFNGFVEHIHGTISRVHETSALLL 228
Cdd:PRK15048  199 LVVVLILLVAWYGIRRMLLTPLAKIIAHIREIAGGN--LANTLTIDGRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIY 276

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 229 GDAKALGTLSQSNNQRVQAQLKETEAAVTAVTQLSASANEVAINAKRTADAATQADRAVDDGQRQFDsGLAITRQlaaEL 308
Cdd:PRK15048  277 AGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVD-GVVKTMH---EI 352

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 309 ARSaqsvsqlqqeTQRIDEVVVVISSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQQATGEIQKMIQQV 388
Cdd:PRK15048  353 ADS----------SKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIEDS 422

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 389 QSRVAETVNVMQSSQTLSNEGVNrseeiklVLSKVTDLVSnisnmniEVSHAAQEQTCVTEAISRTLNDLANVS-GSASL 467
Cdd:PRK15048  423 VSRVDTGSVLVESAGETMNNIVN-------AVTRVTDIMG-------EIASASDEQSRGIDQVALAVSEMDRVTqQNASL 488

                         330       340
                  ....*....|....*....|....*...
gi 1211058078 468 DSEHlAQSSERLFHQGERLRTLVTSFRL 495
Cdd:PRK15048  489 VQES-AAAAAALEEQASRLTQAVSAFRL 515
PRK15041 PRK15041
methyl-accepting chemotaxis protein;
142-495 5.10e-35

methyl-accepting chemotaxis protein;


Pssm-ID: 185001 [Multi-domain]  Cd Length: 554  Bit Score: 137.78  E-value: 5.10e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 142 SYFIQALLILAGSLFVIFIIL-------KRLVITPLDKVVTALEEIANGDgdLSHRLPVETEDEIGKLANAFNGFVEHIH 214
Cdd:PRK15041  187 ASYSQAMWILVGVMIVVLAVIfavwfgiKASLVAPMNRLIDSIRHIAGGD--LVKPIEVDGSNEMGQLAESLRHMQGELM 264

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 215 GTISRVHETSALLLGDAKALGTLSQSNNQRVQAQLKETEAAVTAVTQLSASANEVAINAKRTADAATQADRAVDDGQRQF 294
Cdd:PRK15041  265 RTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVV 344

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 295 DSGLAITRQLAAElarsaqsvsqlqqeTQRIDEVVVVISSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRT 374
Cdd:PRK15041  345 DNVVQTMRDISTS--------------SQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRS 410

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 375 QQATGEIQKMIQQVQSRVAETVNVMQSSQTLSNEGVNrseeiklVLSKVTDLVSnisnmniEVSHAAQEQTCVTEAISRT 454
Cdd:PRK15041  411 AQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVS-------AVTRVTDIMG-------EIASASDEQSRGIDQVGLA 476

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1211058078 455 LNDLANVSGSASLDSEHLAQSSERLFHQGERLRTLVTSFRL 495
Cdd:PRK15041  477 VAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRI 517
MCPsignal pfam00015
Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to ...
 277-462 8.43e-34

Methyl-accepting chemotaxis protein (MCP) signalling domain; This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.


Pssm-ID: 333767 [Multi-domain]  Cd Length: 172  Bit Score: 125.62  E-value: 8.43e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 277 ADAATQADRAVDDGQRQFDSGLAITRQLAaelarsaqsvsqlqQETQRIDEVVVVISSIAEQTNLLALNAAIEAARAGEQ 356
Cdd:pfam00015   1 SDLAQLASEEAQDGGKEVANVVGQMEQIA--------------QSSKKISDIISVIDEIAFQTNLLALNAAIEAARAGEQ 66

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 357 GRGFAVVADEVRSLASRTQQATGEIQKMIQQVQSRVAETVNVMQSSQTLSNEGVNRSEEIKLVLSKVTDLVSNISNMNIE 436
Cdd:pfam00015  67 GRGFAVVADEVRKLAERSAQAAKEIEALIIEIQKQTNDSTASIESTRQRVEVGSTIVESTGEALKEIVDAVAEIADIVQE 146

                         170       180
                  ....*....|....*....|....*.
gi 1211058078 437 VSHAAQEQTCVTEAISRTLNDLANVS 462
Cdd:pfam00015 147 IAAASDEQSAGIDQVNQAVARMDQVT 172
PRK09793 PRK09793
methyl-accepting chemotaxis protein IV;
139-495 1.27e-32

methyl-accepting chemotaxis protein IV;


Pssm-ID: 182079 [Multi-domain]  Cd Length: 533  Bit Score: 130.58  E-value: 1.27e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 139 LLLSYFIQALLILAGSLFvifiILKRLVITPLDKVVTALEEIAngDGDLSHRLPVETEDEIGKLANAFNGFVEHIHGTIS 218
Cdd:PRK09793  191 VFISMIIVAAIYISSALW----WTRKMIVQPLAIIGSHFDSIA--AGNLARPIAVYGRNEITAIFASLKTMQQALRGTVS 264

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 219 RVHETSALLLGDAKALGTLSQSNNQRVQAQLKETEAAVTAVTQLSASANEVAINAKRTADAATQADRAVDDGQRQfdsgl 298
Cdd:PRK09793  265 DVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVGQNADNARQASELAKNAATTAQAGGVQ----- 339

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 299 aitrqlaaeLARSAQSVSQLQQETQRIDEVVVVISSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQQAT 378
Cdd:PRK09793  340 ---------VSTMTHTMQEIATSSQKIGDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAA 410

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 379 GEIQKMIQqvqsrvaETVNVMQSSQTLSNEGVNRSEEIKLVLSKVTDLVSnisnmniEVSHAAQEQTCVTEAISRTLNDL 458
Cdd:PRK09793  411 KEIKGLIE-------ESVNRVQQGSKLVNNAAATMTDIVSSVTRVNDIMG-------EIASASEEQRRGIEQVAQAVSQM 476

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1211058078 459 ANVSGSASLDSEHLAQSSERLFHQGERLRTLVTSFRL 495
Cdd:PRK09793  477 DQVTQQNASLVEEAAVATEQLANQADHLSSRVAVFTL 513
HAMP cd06225
Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain; ...
 167-213 1.04e-10

Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain; HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices connected by an extended linker. The structure of the Af1503 HAMP dimer from Archaeoglobus fulgidus has been solved using nuclear magnetic resonance, revealing a parallel four-helix bundle; this structure has been confirmed by cross-linking analysis of HAMP domains from the Escherichia coli aerotaxis receptor Aer. It has been suggested that the four-helix arrangement can rotate between the unusually packed conformation observed in the NMR structure and a canonical coiled-coil arrangement. Such rotation may coincide with signal transduction, but a common mechanism by which HAMP domains relay a variety of input signals has yet to be established.


Pssm-ID: 381743 [Multi-domain]  Cd Length: 45  Bit Score: 56.68  E-value: 1.04e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1211058078 167 ITPLDKVVTALEEIAngDGDLSHRLPVETEDEIGKLANAFNGFVEHI 213
Cdd:cd06225     1 TRPLRRLTEAARRIA--EGDLDVRVPVRSKDEIGELARAFNQMAERL 45
HAMP smart00304
HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain;
164-218 1.29e-09

HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain;


Pssm-ID: 197640 [Multi-domain]  Cd Length: 53  Bit Score: 53.79  E-value: 1.29e-09
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1211058078  164 RLVITPLDKVVTALEEIAngDGDLSHRLPVETEDEIGKLANAFNGFVEHIHGTIS 218
Cdd:smart00304   1 RRLLRPLRRLAEAAQRIA--DGDLTVRLPVDGRDEIGELARAFNEMADRLEETIA 53
HAMP pfam00672
HAMP domain;
161-214 5.37e-09

HAMP domain;


Pssm-ID: 459898 [Multi-domain]  Cd Length: 53  Bit Score: 51.86  E-value: 5.37e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1211058078 161 ILKRLVITPLDKVVTALEEIAngDGDLSHRLPVETEDEIGKLANAFNGFVEHIH 214
Cdd:pfam00672   1 LLARRILRPLRRLAEAARRIA--SGDLDVRLPVSGRDEIGELARAFNQMAERLR 52
NtrY COG5000
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ...
 139-207 2.13e-08

Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];


Pssm-ID: 444024 [Multi-domain]  Cd Length: 422  Bit Score: 56.12  E-value: 2.13e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1211058078 139 LLLSYFIQALLILAGSLFVIFIILKRLViTPLDKVVTALEEIAngDGDLSHRLPVETEDEIGKLANAFN 207
Cdd:COG5000     7 FLLLLLLIALLLLLLALWLALLLARRLT-RPLRRLAEATRAVA--AGDLSVRLPVTGDDEIGELARAFN 72
YesM COG2972
Sensor histidine kinase YesM [Signal transduction mechanisms];
16-222 2.59e-06

Sensor histidine kinase YesM [Signal transduction mechanisms];


Pssm-ID: 442211 [Multi-domain]  Cd Length: 445  Bit Score: 49.63  E-value: 2.59e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078  16 IFTIVSALFGASYWLASDKLMSGEMAFEDNTVANLQVTMAQPIFTYDYEQIRAVLSVMLKSKQIYQITVVDHRGKLLAED 95
Cdd:COG2972    33 ILLLLLLLILLLLLLILLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLLILLLLLLLLLLLILLLSLLLLLALILLLALL 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078  96 KQAEAVAVNYLQTRELQFSdQGNPTGRLTITFSILPVKAQLSELLLSYFIQALLILAGSLFVIFIILKRLViTPLDKVVT 175
Cdd:COG2972   113 LLLSILLLILGLLLIILLL-LSLLGWTLVSLIPKSELFRGLFSLRRLILLIILLLLLLALLLSYLLSRSIT-RPIKRLKK 190

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1211058078 176 ALEEIANGDGdlsHRLPVETEDEIGKLANAFNGFVEHIHGTISRVHE 222
Cdd:COG2972   191 AMKKVEKGDL---VRLEVSGNDEIGILARSFNEMVERIKELIEEVYE 234
DUF3584 pfam12128
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ...
 198-489 4.94e-06

Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.


Pssm-ID: 432349 [Multi-domain]  Cd Length: 1191  Bit Score: 49.45  E-value: 4.94e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078  198 EIGKLANAFNgfvehihgTISRVHETSALLLGDAKALGTLSQSNNQRVQAQLKETEAAVTAVTQLSASANEVAINAKRTA 277
Cdd:pfam12128  242 EFTKLQQEFN--------TLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAA 313

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078  278 DAATQADR----AVDDGQRQFDSglAITRQLAAELARSAQSVSQLQQETQRIDEVVVVISSIAEQTNLLALNAAIEAARa 353
Cdd:pfam12128  314 DAAVAKDRseleALEDQHGAFLD--ADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNR- 390

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078  354 geqgrgfaVVADEVRSLA----SRTQQATgEIQKMIQQVQSRVAETVNVMQSSQTLSNEGV-NRSEEIKLVLSKVT---D 425
Cdd:pfam12128  391 --------DIAGIKDKLAkireARDRQLA-VAEDDLQALESELREQLEAGKLEFNEEEYRLkSRLGELKLRLNQATatpE 461

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1211058078  426 LVSNISNMNIEVSHAAQEQTCVTEAISRTLNDLANVSGSASLDSEHLAQSSERLFHQGERLRTL 489
Cdd:pfam12128  462 LLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDEL 525
HAMP COG2770
HAMP domain [Signal transduction mechanisms];
42-430 7.49e-06

HAMP domain [Signal transduction mechanisms];


Pssm-ID: 442051 [Multi-domain]  Cd Length: 631  Bit Score: 48.57  E-value: 7.49e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078  42 FEDNTVANLQVTMAQPIFTYDYEQIRAVLSVMLKSKQIYQITVVDHRGKLLAEDKQAEAVAVNYLQTRELQFSDQGNPTG 121
Cdd:COG2770   112 LLLLAALALLLLLLLLLAALLALLLALALLALLLGLAAARLLLAALLALAAALALALGAGELLLLADLAAAIAALLAALL 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 122 RLTITFSILPVKAQLSELLLSYFIQALLILAGSLFVIFIILKRLVITPLDKVVTALEEIANGDgdLSHRLPVETEDEIGK 201
Cdd:COG2770   192 LLLLGGLLLVVLLEAALAALLLLLLLALLALLLALLLALLLARRITRPLRRLAEAARRIAAGD--LDVRIPVSRKDEIGE 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 202 LANAFNGFVEHIHGTISRVHETSALLLGDAKALGTLSQSNNQRVQAQLKETEAAVTAVTQLSASANEVAINAKRTADAAT 281
Cdd:COG2770   270 LARAFNRMADSLRESIEEAEEEEELAEAELARLLEALLELLLALLLLLLALLLLAAAALLLELLLLLLLALLLLLLLAAD 349

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 282 QADRAVDDGQRQFDSGLAITRQLAAELARSAQSVSQLQQETQRIDEVVVVISSIAEQTNLLALNAAIEAARAGEQGRGFA 361
Cdd:COG2770   350 LLLALALAALLLLLALELLLEAELLVLLALEALALEAELAAVLALLAALAAALLLLELALEELVLALLALALLALAAAAA 429

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1211058078 362 VVADEVRSLASRTQQATGEIQKMIQQVQSRVAETVNVMQSSQTLSNEGVNRSEEIKLVLSKVTDLVSNI 430
Cdd:COG2770   430 AAEAAAAALELAAAAIAAAAAAEAEGGLAELEAEELVAAAEALLLLAALLLLAALGALELLLLEEEEEA 498
PRK10935 PRK10935
nitrate/nitrite two-component system sensor histidine kinase NarQ;
148-207 8.03e-05

nitrate/nitrite two-component system sensor histidine kinase NarQ;


Pssm-ID: 236800 [Multi-domain]  Cd Length: 565  Bit Score: 45.23  E-value: 8.03e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 148 LLILAGSLFVIFIIlKRLVITPLDKVVTALEEIANGDGDLShRLPVETEDEIGKLANAFN 207
Cdd:PRK10935  159 ILILTLVFFTVRFT-RRQVVAPLNQLVTASQQIEKGQFDHI-PLDTTLPNELGLLAKAFN 216
NarQ COG3850
Signal transduction histidine kinase NarQ, nitrate/nitrite-specific [Signal transduction ...
 65-409 1.26e-04

Signal transduction histidine kinase NarQ, nitrate/nitrite-specific [Signal transduction mechanisms];


Pssm-ID: 443059 [Multi-domain]  Cd Length: 448  Bit Score: 44.49  E-value: 1.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078  65 QIRAVLSVMLKSKQIYQITVVDHRGKLLAEDKQAEAVAVNYLQTRELQFSDQGNPTGRLTITFSILPVKAQLSELLLSYF 144
Cdd:COG3850    43 LRLLSLLASAGLLAALLAALLLLLSLGLLALLLALLLLLLLLLLAALLSLLLLLLLLLLLLLLLLLLLLAAAINRKLALL 122

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 145 IQALLILAGSLFVIFiiLKRLVITPLDKVVTALEEIANGDgdLSHRLPVETEDEIGKLANAFNGFVEHIHGTISRVHETS 224
Cdd:COG3850   123 RLLLALLLALLLAYL--LRRRIVRPLRRLTQAAERIARGD--FDARVPVSGRDELGTLARAFNRMADELQELYAELEEEE 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 225 ALLLGDAKALGTLSQSNNQRVQAQLKETEAAVTAVTQLSASANEVAINAKRTADAATQADRAVDDGQRQFDSGLAITRQL 304
Cdd:COG3850   199 ELEAELELLALLDELLLLAALLLLLALLLALLLAALLAALLLLLLLQDALAESELLALNILAGLLELLLALLLLLLASAL 278

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1211058078 305 AAELARSAQSVSQLQQETQRIDEVVVVISSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQQATGEIQKM 384
Cdd:COG3850   279 LLLELELLALLLELVELLALAAAEEALLLLVELAALLLLLLLQAIANASLLLIALASVVAALLELASILALQAALEAAAA 358

                         330       340
                  ....*....|....*....|....*
gi 1211058078 385 IQQVQSRVAETVNVMQSSQTLSNEG 409
Cdd:COG3850   359 GAALAAAAAAAGLARALAQAGADAA 383
PRK15347 PRK15347
two component system sensor kinase;
139-207 1.18e-03

two component system sensor kinase;


Pssm-ID: 237951 [Multi-domain]  Cd Length: 921  Bit Score: 41.55  E-value: 1.18e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1211058078 139 LLLSYFIQALLILAGSLFVIFIILKRLVITPLDKVVTALEeiANGDGDLSHRLPVETEDEIGKLANAFN 207
Cdd:PRK15347  294 PALQQLPFALLILVLLTSVLFLLLRRYLAKPLWRFVDIIN--KTGPAALEPRLPENRLDELGSIAKAYN 360
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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