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30S ribosomal protein S6 [Chryseobacterium indologenes]
30S ribosomal protein S6( domain architecture ID 10785350)
30S ribosomal protein S6 is important for the assembly of the central domain of the small subunit via heterodimerization with ribosomal protein S18
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
RpsF | COG0360 | Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S6 ... |
1-107 | 2.70e-41 | |||
Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S6 is part of the Pathway/BioSystem: Ribosome 30S subunit : Pssm-ID: 440129 Cd Length: 107 Bit Score: 131.84 E-value: 2.70e-41
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Name | Accession | Description | Interval | E-value | |||
RpsF | COG0360 | Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S6 ... |
1-107 | 2.70e-41 | |||
Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S6 is part of the Pathway/BioSystem: Ribosome 30S subunit Pssm-ID: 440129 Cd Length: 107 Bit Score: 131.84 E-value: 2.70e-41
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Ribosomal_S6 | pfam01250 | Ribosomal protein S6; |
3-90 | 2.30e-32 | |||
Ribosomal protein S6; Pssm-ID: 460134 Cd Length: 88 Bit Score: 108.71 E-value: 2.30e-32
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bS6 | cd00473 | Bacterial ribosomal protein S6; bS6 is one of the components of the small subunit of the ... |
3-93 | 8.00e-32 | |||
Bacterial ribosomal protein S6; bS6 is one of the components of the small subunit of the prokaryotic ribosome, a ribonucleoprotein organelle that decodes the genetic information in messenger RNA and forms peptide bonds to synthesize the corresponding polypeptides. Ribosomes consist of a large and a small subunit, which assemble during the initiation stage of protein synthesis. Prokaryotic ribosomes consist of three molecules of RNA and more than 50 proteins. The small subunits of bacterial and eukaryotic ribosomes have the same overall shapes (with structural elements described as head, body, platform, beak and shoulder). The bacterial ribosomal protein S6 is important for the assembly of the central domain of the small subunit via heterodimerization with ribosomal protein S18. Pssm-ID: 275385 Cd Length: 91 Bit Score: 107.15 E-value: 8.00e-32
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S6 | TIGR00166 | ribosomal protein S6; The ribosomal protein S6 ortholog family, including yeast MRP17, shows ... |
2-95 | 3.14e-18 | |||
ribosomal protein S6; The ribosomal protein S6 ortholog family, including yeast MRP17, shows more than two-fold length variation from 95 residues in Bacillus subtilis to 215 in Mycoplasma pneumoniae. This length variation comes primarily from poorly conserved C-terminal extensions that are particularly long in the Mycoplasmas. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6. [Protein synthesis, Ribosomal proteins: synthesis and modification] Pssm-ID: 129270 Cd Length: 93 Bit Score: 72.78 E-value: 3.14e-18
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rps6 | CHL00123 | ribosomal protein S6; Validated |
2-92 | 1.07e-16 | |||
ribosomal protein S6; Validated Pssm-ID: 177046 Cd Length: 97 Bit Score: 69.26 E-value: 1.07e-16
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Name | Accession | Description | Interval | E-value | |||
RpsF | COG0360 | Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S6 ... |
1-107 | 2.70e-41 | |||
Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S6 is part of the Pathway/BioSystem: Ribosome 30S subunit Pssm-ID: 440129 Cd Length: 107 Bit Score: 131.84 E-value: 2.70e-41
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Ribosomal_S6 | pfam01250 | Ribosomal protein S6; |
3-90 | 2.30e-32 | |||
Ribosomal protein S6; Pssm-ID: 460134 Cd Length: 88 Bit Score: 108.71 E-value: 2.30e-32
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bS6 | cd00473 | Bacterial ribosomal protein S6; bS6 is one of the components of the small subunit of the ... |
3-93 | 8.00e-32 | |||
Bacterial ribosomal protein S6; bS6 is one of the components of the small subunit of the prokaryotic ribosome, a ribonucleoprotein organelle that decodes the genetic information in messenger RNA and forms peptide bonds to synthesize the corresponding polypeptides. Ribosomes consist of a large and a small subunit, which assemble during the initiation stage of protein synthesis. Prokaryotic ribosomes consist of three molecules of RNA and more than 50 proteins. The small subunits of bacterial and eukaryotic ribosomes have the same overall shapes (with structural elements described as head, body, platform, beak and shoulder). The bacterial ribosomal protein S6 is important for the assembly of the central domain of the small subunit via heterodimerization with ribosomal protein S18. Pssm-ID: 275385 Cd Length: 91 Bit Score: 107.15 E-value: 8.00e-32
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bS6_chloro_cyano | cd15487 | 30S ribosomal protein S6 of chloroplasts and cyanobacteria; bS6 is one of the components of ... |
2-93 | 2.81e-26 | |||
30S ribosomal protein S6 of chloroplasts and cyanobacteria; bS6 is one of the components of the small subunit of the prokaryotic ribosome, a ribonucleoprotein organelle that decodes the genetic information in messenger RNA and forms peptide bonds to synthesize the corresponding polypeptides. Mitochondrial and chloroplastic ribosomes are similar to bacterial ribosomes. Ribosomes consist of a large and a small subunit, which assemble during the initiation stage of protein synthesis. Prokaryotic ribosomes consist of three molecules of RNA and more than 50 proteins. The small subunits of bacterial and eukaryotic ribosomes have the same overall shapes (with structural elements described as head, body, platform, beak and shoulder). The bacterial ribosomal protein S6 is important for the assembly of the central domain of the small subunit via heterodimerization with ribosomal protein S18. Pssm-ID: 275387 Cd Length: 94 Bit Score: 93.43 E-value: 2.81e-26
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S6 | TIGR00166 | ribosomal protein S6; The ribosomal protein S6 ortholog family, including yeast MRP17, shows ... |
2-95 | 3.14e-18 | |||
ribosomal protein S6; The ribosomal protein S6 ortholog family, including yeast MRP17, shows more than two-fold length variation from 95 residues in Bacillus subtilis to 215 in Mycoplasma pneumoniae. This length variation comes primarily from poorly conserved C-terminal extensions that are particularly long in the Mycoplasmas. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6. [Protein synthesis, Ribosomal proteins: synthesis and modification] Pssm-ID: 129270 Cd Length: 93 Bit Score: 72.78 E-value: 3.14e-18
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rps6 | CHL00123 | ribosomal protein S6; Validated |
2-92 | 1.07e-16 | |||
ribosomal protein S6; Validated Pssm-ID: 177046 Cd Length: 97 Bit Score: 69.26 E-value: 1.07e-16
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bS6_mito | cd15465 | Mitochondrial Ribosomal Protein (MRP) S6; bS6_MRPS6 is one of the proteins of the small ... |
4-93 | 6.27e-09 | |||
Mitochondrial Ribosomal Protein (MRP) S6; bS6_MRPS6 is one of the proteins of the small subunit of the mitochondrial ribosome. Mitochondrial and chloroplastic ribosomes are similar to bacterial ribosomes. The ribosome is a ribonucleoprotein organelle that decodes the genetic information in messenger RNA and forms peptide bonds to synthesize the corresponding polypeptide. Ribosomes consist of a large and a small subunit, which assemble during the initiation stage of protein synthesis. Prokaryotic ribosomes consist of three molecules of RNA and more than 50 proteins. The small subunits of bacterial and eukaryotic ribosomes have the same overall shapes (with structural elements described as head, body, platform, beak and shoulder). Mitochondrial and chloroplastic ribosomes synthesize proteins that are involved in oxidative phosphorylation (ATP generation) and photosynthesis. bS6_MRPS6 is one of the fourteen mitochondrial ribosomal proteins that is known to have significant sequence homology with their bacterial counterpart. Pssm-ID: 275386 Cd Length: 95 Bit Score: 49.07 E-value: 6.27e-09
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