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Conserved domains on  [gi|12052854|emb|CAB66600|]
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hypothetical protein [Homo sapiens]

Protein Classification

uL15m family ribosomal protein( domain architecture ID 10467148)

uL15m family ribosomal protein associates with ribosomal RNA and is involved in ribosome assembly

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ribosomal_L27A pfam00828
Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ...
53-175 9.84e-37

Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins.


:

Pssm-ID: 459951  Cd Length: 125  Bit Score: 127.25  E-value: 9.84e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12052854    53 HKGERQRGTRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPMSLNRLQYLIDLGRVDPSQPIDLTQLVNGRGVTiqpl 132
Cdd:pfam00828   9 HKGQKSRSGKVRPGFEGGQMPLYRRLPKRGFKHREYNIFRYAPVNLGKLQELIDEGRLDEGKVIDLEALKEAGLVK---- 84
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 12052854   133 KRDYDVQLVEEGadTFTAKVNIEVQLASELAIAAIEKNGGVVT 175
Cdd:pfam00828  85 KKKDGVKLLGKG--ELTKKLTVKASAFSKSAIEKIEAAGGKVE 125
 
Name Accession Description Interval E-value
Ribosomal_L27A pfam00828
Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ...
53-175 9.84e-37

Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins.


Pssm-ID: 459951  Cd Length: 125  Bit Score: 127.25  E-value: 9.84e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12052854    53 HKGERQRGTRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPMSLNRLQYLIDLGRVDPSQPIDLTQLVNGRGVTiqpl 132
Cdd:pfam00828   9 HKGQKSRSGKVRPGFEGGQMPLYRRLPKRGFKHREYNIFRYAPVNLGKLQELIDEGRLDEGKVIDLEALKEAGLVK---- 84
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 12052854   133 KRDYDVQLVEEGadTFTAKVNIEVQLASELAIAAIEKNGGVVT 175
Cdd:pfam00828  85 KKKDGVKLLGKG--ELTKKLTVKASAFSKSAIEKIEAAGGKVE 125
RplO COG0200
Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15 ...
53-175 1.00e-18

Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439970  Cd Length: 148  Bit Score: 80.83  E-value: 1.00e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12052854  53 HKGERQR-GTRPRLGFEGGQTPFYIRIPKYGFNegHSFRRQYKPMSLNRLQYLIDLGRVdpsqpIDLTQLVNgRGVtiqp 131
Cdd:COG0200  35 HKGQKARsGGGVRPGFEGGQMPLYRRLPKRGFK--NIFRKEYAVVNLGDLNKLFEAGTE-----VTLEALKE-AGL---- 102
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 12052854 132 LKRDYD-VQLVEEGadTFTAKVNIEVQLASELAIAAIEKNGGVVT 175
Cdd:COG0200 103 VKKKKDgVKILGNG--ELTKKLTVKAHKFSKSAKEKIEAAGGKVE 145
rplO_bact TIGR01071
ribosomal protein L15, bacterial/organelle; [Protein synthesis, Ribosomal proteins: synthesis ...
53-175 5.71e-15

ribosomal protein L15, bacterial/organelle; [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273428  Cd Length: 145  Bit Score: 70.43  E-value: 5.71e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12052854    53 HKGERQR-GTRPRLGFEGGQTPFYIRIPKYGF-NEGhsFRRQYKPMSLNRLQYLIDLGRVdpsqpIDLTQLVNGRGVTiq 130
Cdd:TIGR01071  34 HKGQKARsGGKVRRGFEGGQMPLYRRLPKRGFsNKR--FKKEYAEVNLGKLAKLFDNGEV-----VTLETLKEKGLIT-- 104
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 12052854   131 plKRDYDVQLVeeGADTFTAKVNIEVQLASELAIAAIEKNGGVVT 175
Cdd:TIGR01071 105 --KKIKFVKVL--GNGKLTKPLTVKAHRVSKSAKAAIEAAGGSVE 145
 
Name Accession Description Interval E-value
Ribosomal_L27A pfam00828
Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ...
53-175 9.84e-37

Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins.


Pssm-ID: 459951  Cd Length: 125  Bit Score: 127.25  E-value: 9.84e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12052854    53 HKGERQRGTRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPMSLNRLQYLIDLGRVDPSQPIDLTQLVNGRGVTiqpl 132
Cdd:pfam00828   9 HKGQKSRSGKVRPGFEGGQMPLYRRLPKRGFKHREYNIFRYAPVNLGKLQELIDEGRLDEGKVIDLEALKEAGLVK---- 84
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 12052854   133 KRDYDVQLVEEGadTFTAKVNIEVQLASELAIAAIEKNGGVVT 175
Cdd:pfam00828  85 KKKDGVKLLGKG--ELTKKLTVKASAFSKSAIEKIEAAGGKVE 125
RplO COG0200
Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15 ...
53-175 1.00e-18

Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L15 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439970  Cd Length: 148  Bit Score: 80.83  E-value: 1.00e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12052854  53 HKGERQR-GTRPRLGFEGGQTPFYIRIPKYGFNegHSFRRQYKPMSLNRLQYLIDLGRVdpsqpIDLTQLVNgRGVtiqp 131
Cdd:COG0200  35 HKGQKARsGGGVRPGFEGGQMPLYRRLPKRGFK--NIFRKEYAVVNLGDLNKLFEAGTE-----VTLEALKE-AGL---- 102
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 12052854 132 LKRDYD-VQLVEEGadTFTAKVNIEVQLASELAIAAIEKNGGVVT 175
Cdd:COG0200 103 VKKKKDgVKILGNG--ELTKKLTVKAHKFSKSAKEKIEAAGGKVE 145
rplO_bact TIGR01071
ribosomal protein L15, bacterial/organelle; [Protein synthesis, Ribosomal proteins: synthesis ...
53-175 5.71e-15

ribosomal protein L15, bacterial/organelle; [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273428  Cd Length: 145  Bit Score: 70.43  E-value: 5.71e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12052854    53 HKGERQR-GTRPRLGFEGGQTPFYIRIPKYGF-NEGhsFRRQYKPMSLNRLQYLIDLGRVdpsqpIDLTQLVNGRGVTiq 130
Cdd:TIGR01071  34 HKGQKARsGGKVRRGFEGGQMPLYRRLPKRGFsNKR--FKKEYAEVNLGKLAKLFDNGEV-----VTLETLKEKGLIT-- 104
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 12052854   131 plKRDYDVQLVeeGADTFTAKVNIEVQLASELAIAAIEKNGGVVT 175
Cdd:TIGR01071 105 --KKIKFVKVL--GNGKLTKPLTVKAHRVSKSAKAAIEAAGGSVE 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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