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Conserved domains on  [gi|1200544760|gb|OUW56757|]
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low-complexity protein [Cyanobacteria bacterium TMED188]

Protein Classification

pentapeptide repeat-containing protein( domain architecture ID 11442852)

pentapeptide repeat-containing protein (PRP) adopts a beta-helical structure and may have a targeting or structural function

CATH:  2.160.20.10
PubMed:  33925937|9655353

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
47-139 1.38e-16

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


:

Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 72.67  E-value: 1.38e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200544760  47 DMHGLDLKE---KEFLKADLRDVNLSGTDLRGAVINTSQLQGADLRGANLSDivgfaSRFDGADLRGANFTNAMLMQSRF 123
Cdd:COG1357    75 NLTGADLSGanlANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSG-----ANLSGADLSGANLSGANLSGADL 149

                          90
                  ....*....|....*.
gi 1200544760 124 ADAQIEGADFTNAVLD 139
Cdd:COG1357   150 SGADLSGANLSGANLS 165
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
47-139 1.38e-16

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 72.67  E-value: 1.38e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200544760  47 DMHGLDLKE---KEFLKADLRDVNLSGTDLRGAVINTSQLQGADLRGANLSDivgfaSRFDGADLRGANFTNAMLMQSRF 123
Cdd:COG1357    75 NLTGADLSGanlANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSG-----ANLSGADLSGANLSGANLSGADL 149

                          90
                  ....*....|....*.
gi 1200544760 124 ADAQIEGADFTNAVLD 139
Cdd:COG1357   150 SGADLSGANLSGANLS 165
PRK15197 PRK15197
type III secretion system effector PipB;
46-139 1.90e-10

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 58.02  E-value: 1.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200544760  46 MDMHGLDLKEKEFLKADLRDVNLSGTDLRGAVINTSQLQGADLRGANLSDIVGFASRFDGADLRGANFTNAMLMQSRFAD 125
Cdd:PRK15197  154 LNLRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTA 233

                          90
                  ....*....|....
gi 1200544760 126 AQIEGADFTNAVLD 139
Cdd:PRK15197  234 AILFGSDLTDTKLN 247
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
52-133 5.44e-09

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 50.35  E-value: 5.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200544760  52 DLKEKEFLKADLRDVNLSGTDLRGAVINTSQLQGADLRGANLSDivgfaSRFDGADLRGANFTNAMLMQSRFADAQIEGA 131
Cdd:pfam13599   2 DFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRD-----VDFLEAQLKNAQFSGCNLKNSNFSDVKLKGA 76


                  ..
gi 1200544760 132 DF 133
Cdd:pfam13599  77 DF 78
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
47-139 1.38e-16

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 72.67  E-value: 1.38e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200544760  47 DMHGLDLKE---KEFLKADLRDVNLSGTDLRGAVINTSQLQGADLRGANLSDivgfaSRFDGADLRGANFTNAMLMQSRF 123
Cdd:COG1357    75 NLTGADLSGanlANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSG-----ANLSGADLSGANLSGANLSGADL 149

                          90
                  ....*....|....*.
gi 1200544760 124 ADAQIEGADFTNAVLD 139
Cdd:COG1357   150 SGADLSGANLSGANLS 165
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
47-138 8.27e-16

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 70.74  E-value: 8.27e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200544760  47 DMHGLDLKEKEFLKADLRDVNLSGTDLRGAvintsqLQGADLRGANLSDIVGFASRFDGADLRGANFTNAMLMQSRFADA 126
Cdd:COG1357     1 DLSGADLSGADLSGADLSGADLSGANLSGA------LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGA 74

                          90
                  ....*....|..
gi 1200544760 127 QIEGADFTNAVL 138
Cdd:COG1357    75 NLTGADLSGANL 86
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
47-134 3.11e-13

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 63.81  E-value: 3.11e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200544760  47 DMHGLDLKEKEFLKADLRDVNLSGTDLRGAVINTSQLQGADLRGANLSDIvgfasRFDGADLRGANFTNAMLMQSRFADa 126
Cdd:COG1357    98 NLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGA-----DLSGADLSGANLSGANLSGANLAN- 171


                  ....*...
gi 1200544760 127 qIEGADFT 134
Cdd:COG1357   172 -LEGADLK 178
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
46-138 6.79e-13

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 63.04  E-value: 6.79e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200544760  46 MDMHGLDLKEKEFLKADLRDVNLSGTDLRGAVINTSQLQGADLRGANLSdivgfasrfdGADLRGANFTNAMLMQSRFAD 125
Cdd:COG1357    87 ANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLS----------GANLSGANLSGADLSGADLSG 156

                          90
                  ....*....|...
gi 1200544760 126 AQIEGADFTNAVL 138
Cdd:COG1357   157 ANLSGANLSGANL 169
PRK15197 PRK15197
type III secretion system effector PipB;
46-139 1.90e-10

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 58.02  E-value: 1.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200544760  46 MDMHGLDLKEKEFLKADLRDVNLSGTDLRGAVINTSQLQGADLRGANLSDIVGFASRFDGADLRGANFTNAMLMQSRFAD 125
Cdd:PRK15197  154 LNLRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTA 233

                          90
                  ....*....|....
gi 1200544760 126 AQIEGADFTNAVLD 139
Cdd:PRK15197  234 AILFGSDLTDTKLN 247
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
52-133 5.44e-09

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 50.35  E-value: 5.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200544760  52 DLKEKEFLKADLRDVNLSGTDLRGAVINTSQLQGADLRGANLSDivgfaSRFDGADLRGANFTNAMLMQSRFADAQIEGA 131
Cdd:pfam13599   2 DFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRD-----VDFLEAQLKNAQFSGCNLKNSNFSDVKLKGA 76


                  ..
gi 1200544760 132 DF 133
Cdd:pfam13599  77 DF 78
PRK15196 PRK15196
type III secretion system effector PipB2;
66-139 1.37e-08

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 52.70  E-value: 1.37e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1200544760  66 VNLSGTDLRGAVINTSQLQGADLRGANLSDIVGFASRFDGADLRGANFTNAMLMQSRFADAQIEGADFTNAVLD 139
Cdd:PRK15196  152 MNLKGAVLTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLD 225
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
62-139 9.34e-08

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 49.17  E-value: 9.34e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1200544760  62 DLRDVNLSGTDLRGAvintsQLQGADLRGANLSDIvgfasrFDGADLRGANFTNAMLMQSRFadaqiEGADFTNAVLD 139
Cdd:COG1357     1 DLSGADLSGADLSGA-----DLSGADLSGANLSGA------LSGANLSGANLSGANLTGANL-----SGADLSGADLS 62
PRK15197 PRK15197
type III secretion system effector PipB;
47-140 9.41e-08

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 50.31  E-value: 9.41e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200544760  47 DMHGLDLKEKEFLKADLRDVNLSGTDLRGAVINTSQLQGADLRGANLSDivgfaSRFDGADLRGANFTNAMLMQSRFADA 126
Cdd:PRK15197  170 DLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTH-----ADLTCANMSGVNLTAAILFGSDLTDT 244

                          90
                  ....*....|....
gi 1200544760 127 QIEGADFTNAVLDL 140
Cdd:PRK15197  245 KLNGAKLDKIALTL 258
PRK15197 PRK15197
type III secretion system effector PipB;
60-136 1.37e-07

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 49.54  E-value: 1.37e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1200544760  60 KADLRDVNLSGTDLRGAVINTSQLQGADLRGANLSDIvgfasRFDGADLRGANFTNAMLMQSRFADAQIEGADFTNA 136
Cdd:PRK15197  153 FLNLRGVNLAHKDFQGEDLSDIDASNADFRETTLSNV-----NLVGANLCCANLHAVNLMGSNMTKANLTHADLTCA 224
PRK15196 PRK15196
type III secretion system effector PipB2;
46-138 1.59e-07

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 49.62  E-value: 1.59e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200544760  46 MDMHGLDLKEKEFLKADLRDVNLSGTDLRGAVINTSQLQGADLRGANLSdivgfasrfdGADLRGANFTNAMLMQSRFAD 125
Cdd:PRK15196  152 MNLKGAVLTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLS----------GTSLGDSNFKNACLEDSIMCG 221

                          90
                  ....*....|...
gi 1200544760 126 AQIEGADFTNAVL 138
Cdd:PRK15196  222 ATLDHANLTGANL 234
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 61-115 2.16e-07

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 45.02  E-value: 2.16e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1200544760  61 ADLRDVNLSGTDLRGAVintsqLQGADLRGANLSdivgfasrfdGADLRGANFTN 115
Cdd:pfam00805   1 ANLSGANLSGANLSGAN-----LSGANLTGANLS----------GADLSGANLSG 40
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 86-135 3.93e-06

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 41.56  E-value: 3.93e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1200544760  86 ADLRGANLSdivgfasrfdGADLRGANFTNAMLMQSRFADAQIEGADFTN 135
Cdd:pfam00805   1 ANLSGANLS----------GANLSGANLSGANLTGANLSGADLSGANLSG 40
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 101-138 4.41e-05

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 38.86  E-value: 4.41e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1200544760 101 SRFDGADLRGANFTNAMLMQSRFADAQIEGADFTNAVL 138
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANL 38
PRK15196 PRK15196
type III secretion system effector PipB2;
47-138 4.44e-05

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 42.30  E-value: 4.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200544760  47 DMHGLDLKEKEFLKADLRDVNLSGTDLRGAVINTSQLQGADLRGANLSDIVGFAsrfdgADLRGANFTNAMLMQSRFADA 126
Cdd:PRK15196  228 NLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIMA-----AIMEGAVLTRANLRKASFIST 302

                          90
                  ....*....|..
gi 1200544760 127 QIEGADFTNAVL 138
Cdd:PRK15196  303 NLDGADLAEANL 314
PRK15196 PRK15196
type III secretion system effector PipB2;
44-131 1.21e-04

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 41.15  E-value: 1.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200544760  44 ITMDMHGLDLKEKEFLKADLRDVNLSGTDLRGAVINTSQLQGADLRGANLSDIVGFASRFDGADLRGANFTNAMLMQSRF 123
Cdd:PRK15196  245 IECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTL 324


                  ....*...
gi 1200544760 124 ADAQIEGA 131
Cdd:PRK15196  325 THLRTEDA 332
PRK15377 PRK15377
type III secretion system effector HECT-type E3 ubiquitin transferase;
83-138 1.30e-03

type III secretion system effector HECT-type E3 ubiquitin transferase;


Pssm-ID: 185275 [Multi-domain]  Cd Length: 782  Bit Score: 38.51  E-value: 1.30e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1200544760  83 LQGADLRGANLSDIV--GFASRfDGADLRGANFTNAMLMQSRFADAQIEGADFTNAVL 138
Cdd:PRK15377  197 FSNADFRNINFSKINpsGFMLR-DGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTL 253
PRK15196 PRK15196
type III secretion system effector PipB2;
47-160 4.88e-03

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 36.52  E-value: 4.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1200544760  47 DMHGLDLKEKEFLKADLRDVNLSGTDLR-----GAVINTSQLQGADLRGANLSDIVGFASRFDGADLRGANFTNAMLMQS 121
Cdd:PRK15196  188 DCEGANFKGANLSGTSLGDSNFKNACLEdsimcGATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRA 267

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1200544760 122 RFADAQIEGADFTNAVLdlpqQRALCARADGSHPNGVST 160
Cdd:PRK15196  268 DMSGATLQGATIMAAIM----EGAVLTRANLRKASFIST 302
PRK15196 PRK15196
type III secretion system effector PipB2;
76-138 8.97e-03

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 35.75  E-value: 8.97e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1200544760  76 AVINTSQ----LQGADLRGANLSdivgfASRFDGADLRGANFTNAMLMQSRFADAQIEGADFTNAVL 138
Cdd:PRK15196  143 SVILTAQggmnLKGAVLTGANLT-----AENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTSL 204
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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