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Conserved domains on  [gi|1199894903|ref|YP_009379406|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Cypseloides fumigatus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 9.83e-166

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 465.84  E-value: 9.83e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   1 MNPYAKLIFTMSLLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWS 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  81 SGQWDITQLNHPISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFLTSHSLNSTLLTIMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYMYCLMTVTVFLTLNTTKTLKLSTMMISWTKAPTL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 241 NATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYYSTITLPPNPTNHMKQWHIHKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1199894903 321 TSTLISILTSLSTLLLPLSPMILSII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 9.83e-166

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 465.84  E-value: 9.83e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   1 MNPYAKLIFTMSLLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWS 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  81 SGQWDITQLNHPISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFLTSHSLNSTLLTIMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYMYCLMTVTVFLTLNTTKTLKLSTMMISWTKAPTL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 241 NATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYYSTITLPPNPTNHMKQWHIHKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1199894903 321 TSTLISILTSLSTLLLPLSPMILSII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-299 5.53e-40

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 146.41  E-value: 5.53e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  14 LLGTTIVISSNHWMAIWTGLEINTLAIIPLIS-KYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQLNHP 92
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAA 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  93 IS------------CALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMK---FPPITILFLTSHSLNS----TL 153
Cdd:COG1007   192 LAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAALLRLLVEAFPGLAadwqLL 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 154 LTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTL--LTFYM--YCLMTVTVFLTLNTTKTLKLST 229
Cdd:COG1007   272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSRKGGEA 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1199894903 230 MMIS-----WTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYY 299
Cdd:COG1007   352 EEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 4.32e-30

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 119.28  E-value: 4.32e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  14 LLGTTIVISSNHWMAIWTGLEINTLAIIPLIS-KYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQLNHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  93 ------------ISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMK---FPPITILFLTS----HSLNSTL 153
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 154 LTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTL--LTFY--MYCLMTVTVFLTL------NTTK 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1199894903 224 TLKLSTMMISWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.20e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 109.71  E-value: 1.20e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  23 SNHWMAIWTGLEINTLAIIPLI-SKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQL-----------N 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  91 HPISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMK----FPPITILFLTSHSLN--STLLTIMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVkaggYGLIRRSLLYLPSSPfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 165 GGWMGLNQTQIRKILAFSSISHLGWMTIIL----IYNPKLTLLTFYMYCLMTVTVFL-----TLNTTKTLKLSTMMISWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1199894903 236 KAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 9.83e-166

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 465.84  E-value: 9.83e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   1 MNPYAKLIFTMSLLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWS 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  81 SGQWDITQLNHPISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFLTSHSLNSTLLTIMAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYMYCLMTVTVFLTLNTTKTLKLSTMMISWTKAPTL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 241 NATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYYSTITLPPNPTNHMKQWHIHKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1199894903 321 TSTLISILTSLSTLLLPLSPMILSII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-320 1.11e-131

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 379.53  E-value: 1.11e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   1 MNPYAKLIFTMSLLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWS 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  81 SGQWDITQLNHPISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFLTSHSlNSTLLTIMAIL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYMYCLMTVTVFLTLNTTKTLKLSTMMISWTKAPTL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 241 NATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYYSTITLPPNPTNHMKQWHIHKP 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-316 7.54e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 374.64  E-value: 7.54e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   1 MNPYAKLIFTMSLLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWS 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  81 SGQWDITQLNHPISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFLTSHSLNSTLLTIMAIL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYMYCLMTVTVFLTLNTTKTLKLSTMMISWTKAPTL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1199894903 241 NATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYYSTITLPPNPTNHMKQWH 316
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWR 316
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-316 7.83e-117

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 341.83  E-value: 7.83e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   1 MNPYAKLIFTMSLLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWS 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  81 SGQWDITQLNHPISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFLTSHSLNSTLLTIMAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYMYCLMTVTVFLTLNTTKTLKLSTMMISWTKAPTL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1199894903 241 NATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYYSTITLPPNPTNHMKQWH 316
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQ 316
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-315 6.74e-96

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 288.41  E-value: 6.74e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   1 MNPYAKLIFTMSLLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWS 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  81 SGQWDITQLNHPISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFLTSHSLNSTLLTIMAIL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYMYCLMTVTVFLTLNTTKTLKLSTMMISWTKAPTL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1199894903 241 NATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYYSTITLPPNPTNHMKQW 315
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSW 315
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-307 1.84e-88

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 269.49  E-value: 1.84e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   1 MNPYAKLIFTMSLLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWS 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  81 SGQWDITQLNHPISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFLTSHSLNSTLLTIMAIL 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYMYCLMTVTVFLTLNTTKTLKLSTMMISWTKAPTL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1199894903 241 NATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYYSTITLPPN 307
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQ 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-313 1.99e-61

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 199.66  E-value: 1.99e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   1 MNPYAKLIFTMSLLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWS 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  81 SGqwditqLNHPISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILfltSHSLNSTLLTIMAIL 160
Cdd:MTH00160   82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 161 STALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYMYCLMTVTVFLTLNTTKTLKLSTMMISWTKAPTL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1199894903 241 NATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYYSTITLPPNPTNHMK 313
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK 305
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-302 5.03e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 180.08  E-value: 5.03e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   5 AKLIFTMSLLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  85 DITqlnhpiscALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPI-TILFLTSHSLNSTLLTIMAILSTA 163
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 164 LGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYMYCLMTVTVFLTLNtTKTLKLSTMMISWTKAPTLNAT 243
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLW-SGDSGSMKDLGSLKPSYKTGLS 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1199894903 244 LMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYYSTI 302
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-305 8.02e-50

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 169.19  E-value: 8.02e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   7 LIFTMSLLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLKN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  87 tqlnhpISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFLTSHSLNSTLLTIMAILSTALGG 166
Cdd:MTH00011   89 ------ITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 167 WMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYMYCLMTVTVFLTLNTTKTLKLSTMMISWTKAPTLNATLMM 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1199894903 247 TLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYYSTITLP 305
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSP 301
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-302 3.54e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 146.36  E-value: 3.54e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   8 IFTMSLLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSStinawSSGQWDIT 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGG-----SLSFSNLY 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  88 QlnHPISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFLTSHslNSTLLTIMAILSTALGGW 167
Cdd:MTH00197   77 L--SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 168 MGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYMYCLMTVTVFLTLNTTKTLKLSTMMISWTKAPTLNATLMMT 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1199894903 248 LLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYYSTI 302
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-299 5.53e-40

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 146.41  E-value: 5.53e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  14 LLGTTIVISSNHWMAIWTGLEINTLAIIPLIS-KYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQLNHP 92
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAA 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  93 IS------------CALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMK---FPPITILFLTSHSLNS----TL 153
Cdd:COG1007   192 LAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAALLRLLVEAFPGLAadwqLL 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 154 LTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTL--LTFYM--YCLMTVTVFLTLNTTKTLKLST 229
Cdd:COG1007   272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSRKGGEA 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1199894903 230 MMIS-----WTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYY 299
Cdd:COG1007   352 EEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-299 6.59e-35

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 133.02  E-value: 6.59e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  14 LLGTTIVISSNHWMAIWTGLEINTLAIIPLIS-KYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQLNHP 92
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  93 IS------------CALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMK---FPPIT----ILFLTSHSLNSTL 153
Cdd:PRK05777  193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrllvVAFGGLSEDWQQV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 154 LTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTL--LTFYM--YCLMTVTVF--LTLNTTKTLKL 227
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFgvISLLRRKGGEA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1199894903 228 STM----MISWTKaPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYY 299
Cdd:PRK05777  353 ESIsdfaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKL 427
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 6.59e-33

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 125.53  E-value: 6.59e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  13 LLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHP-RAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQLN- 90
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSYINl 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  91 ------------HPISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFltSHSLNSTLLTIMA 158
Cdd:MTH00196   82 vlnsgqsfssvsVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 159 ILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIL----IYNPKLTLLTFYMYCLMTVTVF---LTLNTTKTLKLSTMM 231
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFsiiLALNVYKNLIIEFSG 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1199894903 232 ISwTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRL 296
Cdd:MTH00196  240 LS-RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 4.32e-30

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 119.28  E-value: 4.32e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  14 LLGTTIVISSNHWMAIWTGLEINTLAIIPLIS-KYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQLNHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  93 ------------ISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMK---FPPITILFLTS----HSLNSTL 153
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 154 LTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTL--LTFY--MYCLMTVTVFLTL------NTTK 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1199894903 224 TLKLSTMMISWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLA 297
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-296 2.18e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 117.43  E-value: 2.18e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  13 LLLGTTIVISSNHWMAIWTGLEINTLAIIPLIS-KYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQLNH 91
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  92 ----PISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFLTSHSLNSTLltIMAILSTALGGW 167
Cdd:MTH00199  186 iltgDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVL--ICAVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 168 MGLNQTQIRKILAFSSISHLGWMTIILIYNP----KLTLLTFYMYCLMTVTVF---LTLNTTKTLKLSTMMISwTKAPTL 240
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS-RKNPVI 342

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1199894903 241 NATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRL 296
Cdd:MTH00199  343 ALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.20e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 109.71  E-value: 1.20e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  23 SNHWMAIWTGLEINTLAIIPLI-SKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQL-----------N 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  91 HPISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMK----FPPITILFLTSHSLN--STLLTIMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVkaggYGLIRRSLLYLPSSPfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 165 GGWMGLNQTQIRKILAFSSISHLGWMTIIL----IYNPKLTLLTFYMYCLMTVTVFL-----TLNTTKTLKLSTMMISWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1199894903 236 KAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-296 5.29e-25

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 104.46  E-value: 5.29e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   9 FTMSLLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQ 88
Cdd:COG0651   112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMAD 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  89 LNHPIS----------CALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMK--------------FPPITILFL 144
Cdd:COG0651   192 LAARLAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTkvgvyailrvltllFGADPALFL 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 145 tshslnSTLLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTI-ILIYNPK-LTLLTFYM--YCLMTVTVFLT-- 218
Cdd:COG0651   272 ------GTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLgLGLGTPLgLAGALFHLlnHALAKALLFLAag 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 219 --LNTTKTLKLSTMMISWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRL 296
Cdd:COG0651   346 aiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-296 9.53e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 93.38  E-value: 9.53e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  15 LGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAI---------EAAIKYFLVQAAASTLLLFS------------ 73
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGcalyfgftgneg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  74 --STINAWSSGQWDITQLNHPISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFppITILFLTSHSLNS 151
Cdd:MTH00198  279 mlGTILSATLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 152 TLLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIL-------IYNPKLTLLTFYMYCLMTVTVFLTL----- 219
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALASFTVICTLeefgt 436

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 220 -------------NTTKTLKLSTMMISWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILS 286
Cdd:MTH00198  437 rtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVA 516

                         330
                  ....*....|....*..
gi 1199894903 287 LLGL-------FFYLRL 296
Cdd:MTH00198  517 LFAIictcisaFYYIRI 533
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-263 7.02e-19

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 87.37  E-value: 7.02e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   7 LIFTMSLLLGTTIVISSNHWMAIWTGLEINTLAIIPLiSKYHHP--RAIEAAIKYFLVQAAASTLLLFS-STINAWSSGQ 83
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLL-SGYTKKdvRSNEATMKYLLMGGASSSILVYGfSWLYGLSGGE 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  84 WDI---------TQLNHPISC----ALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPP-------ITILF 143
Cdd:CHL00049  193 IELqeivnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAAsalatriFDIPF 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 144 LTSHSLNSTLLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILI-------YNPKLTLLTFYMycLMTVTVF 216
Cdd:CHL00049  273 YFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYI--FMNLGTF 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1199894903 217 LTLnTTKTLKLSTMMI-----SWTKAPTLNATLMMTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049  351 ACI-VLFGLRTGTDNIrdyagLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 4.92e-18

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 84.72  E-value: 4.92e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  50 PRAIEAAIKYFLVQAAASTLLLF-SSTINAWSSGQwdiTQLnHPISCALLTTA--------------IAMKLGLVPFHFW 114
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQL-SAIALALITSPslglalalvfviagIAFKISAVPFHQW 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 115 FPEVLQGSSLTTAMLLSTVMK---FPPITILFLTSHSLNST----LLTIMAILSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK02504  233 TPDVYEGSPTPVVAFLSVGSKaagFALAIRLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQA 312

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 188 GWMTIILIYNPK--LTLLTFYM--YCLMTVTVFLTLnTTKTLKLSTMMIS-----WTKAPTLNATLMMTLLSLAGLPPLT 258
Cdd:PRK02504  313 GFVMIGLVAGTEagYASMVFYLlaYLFMNLGAFACV-ILFSLRTGTDQISdyaglYQKDPLLTLGLSLCLLSLGGIPPLA 391


                  ....*
gi 1199894903 259 GFLPK 263
Cdd:PRK02504  392 GFFGK 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-292 1.93e-14

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 73.96  E-value: 1.93e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  38 LAIIP---LISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQW--DITQL-NHPIS-------CALLTTAIAM 104
Cdd:COG1008   142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELaAAPLPltaqlllFLAFFIAFAV 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 105 KLGLVPFHFWFPEVLQGSSLTTAMLLSTVMK--------------FPPITILFltshslnSTLLTIMAILSTALGGWMGL 170
Cdd:COG1008   222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLkmggygllrfalplFPEASAYF-------APLLAALGVIGIIYGALVAL 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 171 NQTQIRKILAFSSISHLGWMTI-ILIYNPK-LTLLTFYM--YCLMTVTVFLTL----NTTKTLKLSTMMISWTKAPTLNA 242
Cdd:COG1008   295 AQTDLKRLIAYSSVSHMGFVLLgIFALNPLgLQGAVLQMvsHGLITAALFLLVgvlyDRTHTRDIADLGGLAKRMPVLAA 374

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1199894903 243 TLMMTLLSLAGLPPLTGFLPKWLTIQELTKqemttTAMIIAILSLLGLFF 292
Cdd:COG1008   375 LFLLAALASLGLPGTSGFVGEFLVLLGAFQ-----VNPWLAILAALGLIL 419
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-311 5.65e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 69.52  E-value: 5.65e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  33 LEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQL------NHPISCA--LLTTAIAM 104
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLagalaeNPTVVTAfgFVLLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 105 KLGLVPFHFWFPEVLQG-SSLTTAMLLSTVMK---FPPITILF------LTSHSLNSTLLTIMAILSTALGGWMGLNQTQ 174
Cdd:PRK08375  215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKvavYALIRIYFtvfggdFRFALGLGWLLAVLALLSMLVGSLAALGQDD 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 175 IRKILAFSSISHLGWMTIILIYNPKLTLL--TFYM--YCLMTVTVFLTLN----TTKTLKLSTMMISWTKAPTLNATLMM 246
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGaievTYGTRRLSELSGLGRRMPLTAAAFAV 374

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1199894903 247 TLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYYSTITLPPNPTNH 311
Cdd:PRK08375  375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSEA 439
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-308 2.48e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 67.81  E-value: 2.48e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  33 LEINTLAIIPLISkYHHPR--AIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQLNHPIS----------CALLTT 100
Cdd:PRK08376  150 LEIMSIASYALVA-FRNDTweAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSenptvvakiaLALFIA 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 101 AIAMKLGLVPFHFWFPEVLQG--SSLTTAMLLSTVMKFPPIT-ILF-LTSHSLNST----LLTIMAILSTALGGWMGLNQ 172
Cdd:PRK08376  229 GLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALArVLFsIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQ 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 173 TQIRKILAFSSISHLGWM------TIILIYNPKLT----------LLTFYMYCLMTVTVFLT----LNTTKTLKLSTMMI 232
Cdd:PRK08376  309 KDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELGG 388

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1199894903 233 SWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLtIQELTKQEMTTTAMIIAILSLLGLFFYLRlAYYSTITLPPNP 308
Cdd:PRK08376  389 LARTMPKTTIAFLIGAAAIVGLPPFNGFASKWL-IYESSALFNPILGVIAMIGSVLTLASFVK-VFHTAFFGPPSE 462
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 43-288 4.48e-12

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 66.89  E-value: 4.48e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  43 LISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQ-WDITQL-NHPISCALLT-------TAIAMKLGLVPFHF 113
Cdd:TIGR01972 145 LIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELlNLPLPFGVQTwlflaffIAFAVKVPLFPLHT 224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 114 WFPEV-LQGSSLTTAMLLSTVMKFPPITI------LFLTSHSLNSTLLTIMAILSTALGGWMGLNQTQIRKILAFSSISH 186
Cdd:TIGR01972 225 WLPDAhVEAPTAGSVILAGVLLKMGTYGFlrfnlpLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISH 304

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 187 LGWMTIILIYNPKLTLL--TFYMYC--LMTVTVFLTLNT----TKTLKLSTMMISWTKAPTLNATLMMTLLSLAGLPPLT 258
Cdd:TIGR01972 305 MGFVLLGIFSFNELGISgaVFQMIShgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTS 384

                         250       260       270
                  ....*....|....*....|....*....|
gi 1199894903 259 GFLPKWLTIQELTKqeMTTTAMIIAILSLL 288
Cdd:TIGR01972 385 GFVGEFLILLGSFK--VNPVVAFLAALGIV 412
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-298 8.01e-12

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 66.17  E-value: 8.01e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   2 NPYAKLIFTMSLLLGTTIVISSNHWMAIWTGLEINTLA---IIPLISKYhhprAIEAAIKYFLVQAAASTLLLFSSTINA 78
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfmMVPMGKKE----SRKASLKYFVLSAIGAYAMLYAIFLIY 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  79 WSSGQWDITQLNHPISCA-----------LLTTAIAMKLGLVPFHFWFPE-----------VLQGS-SLTTAMLLSTVMK 135
Cdd:PRK08668  172 AKTGTFDFADISQGLINDtstgfalivflFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQlSKLGAYGFLLVLY 251

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 136 FPPITILFLT-----SHSLNSTLLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWmtiILIYNPKLTLLTF----- 205
Cdd:PRK08668  252 VLPGTKLFSEfgtyrGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglf 328

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 206 --YMYCLMTVTVFLTLNT----TKTLKLSTMMISWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTA 279
Cdd:PRK08668  329 hvFNHALFKGLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITA 408

                         330
                  ....*....|....*....
gi 1199894903 280 MIIAILSLLGLFFYLRLAY 298
Cdd:PRK08668  409 FMAFFGSIGSFLYVFRPLA 427
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 4-291 1.47e-10

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 62.25  E-value: 1.47e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   4 YAKLIFTMSLllgttiVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLV------QAAASTLLLFSSTIN 77
Cdd:PRK06458  114 YQLFLFTMLL------ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIIcsvgvaFALFGTILVYANAAT 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  78 AWSSGQ----W-DITQLNHPISCALLTTAIAM-------KLGLVPFHFWFPEV-LQGSSLTTAML--------LSTVMKF 136
Cdd:PRK06458  188 VMGDGEmailWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAhSEAPSPVSALLsgvllnvaLYAVLRY 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 137 PPITILFLTSHSLNsTLLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKL----TLLTFYMYCLMT 212
Cdd:PRK06458  268 YILIDAAIGSDFPG-RLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLgifaALLHMLNHSLTK 346

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 213 VTVFLT----LNTTKTLKLSTMMISWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMtttaMIIAILSLL 288
Cdd:PRK06458  347 SAIFFAsgnvLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGP----LLIAILLLL 422


                  ...
gi 1199894903 289 GLF 291
Cdd:PRK06458  423 LLT 425
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-301 2.73e-10

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 61.32  E-value: 2.73e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   7 LIFTMSLLLgttIVISSNHWMaIWTGLEINTLAIIPLIS-KYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWD 85
Cdd:COG1009   118 LLFMAAMLG---LVLSDNLLL-LFVFWELVGLCSYLLIGfWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  86 ITQLNH----PISCALLTTAIAM-------KLGLVPFHFWFPEVLQGSSLTTAMLLSTVM---------KFPPItilFLT 145
Cdd:COG1009   194 FSELLAaaptILSSPLLTLILLLlllgafgKSAQFPLHFWLPDAMEGPTPVSALLHAATMvkagvyllaRLSPL---FAL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 146 SHSLNSTLLTIMAIlsTAL-GGWMGLNQTQIRKILAFSSISHLGWMTIIL---IYNPKLTLLT---FYMYCLMTVT--VF 216
Cdd:COG1009   271 SPVWLTVVAIIGAI--TALfAALIALAQTDIKRVLAYSTVSQLGYMFLALgvgAYVAALFHLLthaFFKALLFLGAgsVI 348

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 217 LTLNTTKTLKLSTMmisWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTkqEMTTTAMIIAILSLLGLFFylrL 296
Cdd:COG1009   349 HATGTRDIRKMGGL---RKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAAL--EAGGLGPLLLAVALLGAFL---T 420


                  ....*
gi 1199894903 297 AYYST 301
Cdd:COG1009   421 AFYSF 425
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
53-299 3.63e-09

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 57.65  E-value: 3.63e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  53 IEAAIKYFLVQAAASTLLLFS--------STIN-AWSSGQWDITQLNHPIS--CALLTTAIAMKLGLVPFhFWFPEVLQG 121
Cdd:PRK12663  157 LRGAIKYVVLNLIGSWLFLLGigllygtfGTLNmAHIAMRLNDMGDTATLTtiALLFLLAFGMKAALFPF-MWLPAAYHT 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 122 SSLTTAMLLSTVMK-------FPPITILFLTSHSLNSTLLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTI-I 193
Cdd:PRK12663  236 PNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgL 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 194 LIYNPK-LTLLTFYMYCLMTVTVFLTLNT------TKTLKLSTMMISWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLT 266
Cdd:PRK12663  316 ALGTPAgINGAIFYLVHDMVVKTALFLIAgslvrlTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLL 395

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1199894903 267 IQ-ELTKQEMTTTAMIIA--ILSLLGLFFYLRLAYY 299
Cdd:PRK12663  396 VQgALDNGAYILLALMLItsLITMYSLFRIFFLAYW 431
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 43-267 2.01e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 55.59  E-value: 2.01e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  43 LISKYHHPRAIEAAIKYFLVQAAASTLLLFS----STINAWSSGQWDITQL-NHPISCALLT-------TAIAMKLGLVP 110
Cdd:PRK05846  150 LIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlNLPLPPGVQYwlflaffIAFAVKMPMFP 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 111 FHFWFPEVLQGSSLTTAMLLSTVMK--------------FPPITILFltshslnSTLLTIMAILSTALGGWMGLNQTQIR 176
Cdd:PRK05846  230 LHTWLPDAHVQAPTAGSVLLAGILLkmgaygllrfslplFPDASHEF-------APIIITLGVIAIIYGALVALAQTDIK 302

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 177 KILAFSSISHLGWMTI-ILIYNPK-LTLLTFYM--YCLMTVTVFLTLNT----TKTLKLSTMMISWTKAPTLNATLMMTL 248
Cdd:PRK05846  303 KLIAYSSISHMGFVTLgIFAGNQLgIQGAIFQMisHGLSSAALFLLVGVlydrLHTRDIADYGGLAKVMPVLAAFFLFFA 382

                         250
                  ....*....|....*....
gi 1199894903 249 LSLAGLPPLTGFLPKWLTI 267
Cdd:PRK05846  383 MASLGLPGTSGFVGEFLIL 401
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-289 2.61e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 55.31  E-value: 2.61e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 109 VPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFLTSHSLNST-----LLTIMAILSTALGGWMGLNQTQIRKILAFSS 183
Cdd:PRK12647  212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYST 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 184 ISHLGWMTIILIYNPKLTLLTFYMY----CLMTVTVFLTLNT----TKTLKLSTMMISWTKAPTLNATLMMTLLSLAGLP 255
Cdd:PRK12647  292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIidheTGTRDITKLGGLRRAMPITAAAALLAALSMAGLP 371

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1199894903 256 PLTGFLPKWLTIQELTkqEMTTTAMIIAILSLLG 289
Cdd:PRK12647  372 PLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 80-263 3.05e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 55.32  E-value: 3.05e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  80 SSGQWDITQL-NHPISCALLTTAIAM-------KLGLVPFHFWFPEVLQGSSLTTAMLLSTVM---------KFPPItil 142
Cdd:PRK12644  183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG--- 259

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 143 FLTSHSLNSTLLtIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIL-IYNPKLTLLTFYMYC---LMTVTVFLT 218
Cdd:PRK12644  260 FADVPVWRPTVL-VLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALAGLAMLLahaLFKAALFLV 338

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1199894903 219 L----NTTKTLKLSTMMISWTKAPTLNATLMMTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  339 VgiidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-192 8.60e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 53.61  E-value: 8.60e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  13 LLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAA------STLLLFSSTINAWSSGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  87 TQLNHP----------ISCALLTTAIAMKLGLVPFHFWFPEV-LQGSSLTTAMLLSTVMKFPPITILFLTS-------HS 148
Cdd:PRK08676  191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1199894903 149 LNSTLLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTI 192
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 9.27e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 53.42  E-value: 9.27e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  33 LEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQLNH--PISCALLTTAIAMKLGLVP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 111 FHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFLTSHSLNST--LLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 189 WMTIILIYNPKLTLltfyMYCLMTVTVFLTLNT----TKTLKLSTMMISWTKAPtlnatLMMTLLSLAGLPPLTGFLPKW 264
Cdd:PRK07234  283 FILAAPLVGGLYAL----AHGLVKSTLFLCAGAlpsrNFTELISQMLGIGKWIP-----LTMASFSIAGFPLLAGFVSKV 353


                  ....*..
gi 1199894903 265 LTIQELT 271
Cdd:PRK07234  354 LTLKNLL 360
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
2-308 4.60e-07

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 51.19  E-value: 4.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   2 NPYAKLIFtMSLLLGTTIVISsNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSS 81
Cdd:PRK06277  100 GLYVFLML-MGLASVSAIVLA-DDIFNLYVFFEIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLAST 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  82 GQWDITQLNHPI-----------SCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILF------- 143
Cdd:PRK06277  178 GTLNITDIHNALlvnptspviygGLLLLIFGLLYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLvifklfg 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 144 -LTSHSLNSTLLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLT---------FYMYCLMtV 213
Cdd:PRK06277  258 gLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAgifhainhvIYKSALF-L 336

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 214 TVFLTLNTTKTLKLSTMMISWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSlLGLFFY 293
Cdd:PRK06277  337 GAGIVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVS-IGTFVS 415

                         330
                  ....*....|....*
gi 1199894903 294 LRLAYYStITLPPNP 308
Cdd:PRK06277  416 MMKAFYL-IYLKPKP 429
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-296 1.54e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 49.73  E-value: 1.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   4 YAKLIFTMSLLLGttiVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQ 83
Cdd:PRK12662  113 YSAFLLCLGGLLG---ILVSNDVFNIYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGT 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  84 WDITQL---------NHPISCALL--TTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLS----TVMKFPPITI------- 141
Cdd:PRK12662  190 LNMGDMfliiqdlptNRAIQIGVLfiMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIvydvfka 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 142 -LFLTSHSLNSTLLtIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTFYMY----CLMTVTVF 216
Cdd:PRK12662  270 nFVFTTLPFNNVFM-ILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALF 348

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 217 LT-------LNTTKTLKLSTMmisWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLG 289
Cdd:PRK12662  349 MVsgsisyhFGTTKLEDCLNL---WKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLS 425


                  ....*..
gi 1199894903 290 LFFYLRL 296
Cdd:PRK12662  426 VIYVWKI 432
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-263 2.48e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 49.20  E-value: 2.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  96 ALLTTAIAMKLGLVPFHFWFPEVL-QGSSLTTAM---LLSTVMKFPPI---TILFlTSHSLNsTLLTIMAILSTALGGWM 168
Cdd:PRK12665  213 AVLLVAFGIKAAVFPLSFWLPDSYpTAPAPVTAVfagLLTKVGVYAIIrthTLLF-PGGGLD-TLLMVVALLTMVVGILG 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 169 GLNQTQIRKILAFSSISHLGWMT--IILIYNPKLTLLTFYMYCLMTV--TVFLTL----NTTKTLKLSTMMISWTKAPTL 240
Cdd:PRK12665  291 AIAQSDIKRLLSFTLVSHIGYMVfgIALSTVAGLSGAIYYVAHHITVqtTLFLVVglieRQAGSSSLRRLGGLAKASPLL 370

                         170       180
                  ....*....|....*....|...
gi 1199894903 241 NATLMMTLLSLAGLPPLTGFLPK 263
Cdd:PRK12665  371 AVLFFVPALNLGGIPPFSGFIGK 393
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 43-192 1.21e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 46.95  E-value: 1.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  43 LISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQ--WDITQL---NHPISCALLT-----TAIAMKLGLVPFH 112
Cdd:PRK12561  126 LISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAELgakSYPLALELLLyagflIAFGVKLPIFPLH 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 113 FWFPEVLQGSSLTTAMLLSTVM-KFPPITILFLT------SHSLNSTLLTIMAILSTALGGWMGLNQTQIRKILAFSSIS 185
Cdd:PRK12561  206 TWLPDAHGEASAPVSMILAGVLlKMGGYALIRFNvqmlpdAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVS 285


                  ....*..
gi 1199894903 186 HLGWMTI 192
Cdd:PRK12561  286 HMGFVLL 292
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
10-190 1.34e-05

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 46.62  E-value: 1.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  10 TMSLLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKY-HHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQ 88
Cdd:PRK08168  106 LAGVLAAVHLLVLSDHLLVLIAAWAAISLALHRLLCFYpDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSA 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  89 LNHPISCA-----------LLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTV--------MKFPPitiLFLTSHSL 149
Cdd:PRK08168  186 LWAHLAAQgaspslqaaalLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVvnlggfvlIRFAP---LLEQAPPA 262

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1199894903 150 NsTLLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK08168  263 R-WLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 13-296 1.39e-05

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 46.68  E-value: 1.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  13 LLLGTTIVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQLNH- 91
Cdd:PRK08377  117 LMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHIAQl 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  92 ---------PISCALLTTAIAMKLGLVPFHFWFPEVLQGSSL-TTAMLLSTVMK---FPPITILFLTSHSLNST----LL 154
Cdd:PRK08377  197 agtidptvaQVGLALLIFGLAVEAELFPLNAWAPDAYQAAPHpITVMFSAFVVKaglYAMARILYLMQNANGWSsvlkLV 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 155 TIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTL--LTFYMY------CLMTVTVFLTLNTTKTLK 226
Cdd:PRK08377  277 IIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVdaGVFHMInhaivkALLFLAVGYVGITLGGTE 356

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 227 LSTMMISWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRL 296
Cdd:PRK08377  357 IEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 103-296 1.42e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 46.48  E-value: 1.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 103 AMKLGLVPFHFWFPE----------VLQGSSLTTAMLLSTVMKFppiTILFLTSHSLNSTLLTIMAILSTALGGWMGLNQ 172
Cdd:PRK07691  220 ATKAGLFPLYFWLPGsyyappiaiaALFGALLTKVGVYAIARTF---TLFFSHDTSFTHYLILILALLTIIFGVIGAVAY 296

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 173 TQIRKILAFSSISHLGWMTI-ILIYNPK-LTLLTFYMYCLMTVTVFL------TLNTTKTLKLSTMMISWTKAPTLNATL 244
Cdd:PRK07691  297 FDIKKIIIYNIMIAVGVILVgVAMMTESgMIGAIYYLIHDMIVKAALflligiMIKITGTTDLKKMGGLIKRYPVLGWMF 376

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1199894903 245 MMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRL 296
Cdd:PRK07691  377 FIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK12650 PRK12650
DUF4040 family protein;
32-263 1.88e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 46.57  E-value: 1.88e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  32 GLEINTLAIIPLISKyHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQLNHPISCA---LLTTAIAM---- 104
Cdd:PRK12650  138 AWELVSLASFFLIAR-SGSGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAVliav 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 105 ----KLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFLTSHSLNST-----LLTIMAILSTALGGWMGLNQTQI 175
Cdd:PRK12650  217 aaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwLLIIVGMITALMGAVFAVQKTDL 296

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 176 RKILAFSSISHLGWM-TIILIYNP-KLT--LLTFYMYCLMTVTVFLTL----NTTKTLKLSTMMISWTKAPTLNATLMMT 247
Cdd:PRK12650  297 KKLTAYSTVSQLGWIvATIGVGTPfALTaaVVHTLAHALFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFTFVSVTIA 376

                         250
                  ....*....|....*.
gi 1199894903 248 LLSLAGLPPLTGFLPK 263
Cdd:PRK12650  377 ALSMAAVPPLFGFVSK 392
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 33-288 2.41e-05

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 45.74  E-value: 2.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  33 LEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQLN------HPISCALLTTAIAMKL 106
Cdd:PRK06525  142 FEITGLCSWALISYYQSPKALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSALSglhgslKYLVFLGILFAAWGKS 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 107 GLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFLTSHSLNS------TLLTIMAILSTALGGWMGLNQTQIRKILA 180
Cdd:PRK06525  222 AQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPiphvigYVGAVMAIVTLLYGFLMYLPQQDMKRLLA 301

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 181 FSSISHLGWMTIIL---IYNPKLTL---------------LTFymycLMTVTVFLTLNTTKTLKLSTMMiswTKAPTLNA 242
Cdd:PRK06525  302 YSTITQLGYMFFGLslaILGSRLALegsiayifnhafaksLFF----LVAGALSYSCGTRLLPRLRGVL---KKLPLVGV 374

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1199894903 243 TLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLL 288
Cdd:PRK06525  375 GFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEYWILLPAMVLLL 420
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-290 9.33e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 44.34  E-value: 9.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  59 YFLVQAAASTLLLFSSTINAW-SSGQWDITQLNHP-----ISCALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLST 132
Cdd:PRK08667  166 FYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSG 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 133 VMKFPPI--TILFLTSHSLNS----TLLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLG--------WMTIILIYNP 198
Cdd:PRK08667  246 VMLKVAVygLVRFLMDVLSPElwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVYGLD 325

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 199 KLTLLTFYMYCLMTVT-------VFLT----LNTTKTLKLSTMMISWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLT- 266
Cdd:PRK08667  326 TLALLALGGALFHSLNhalfkslLFLTagsvVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLy 405

                         250       260
                  ....*....|....*....|....*..
gi 1199894903 267 ---IQELTKQEMTTTAMIIAILSLLGL 290
Cdd:PRK08667  406 esfFQSFSVADPLIKILLFSVLAIFAL 432
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 107-272 1.96e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 43.28  E-value: 1.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 107 GLVPFHFWFPEVLQGSSLTTAMLLSTV-MKFPPITILFLTSHSLNSTL-----LTIMAILSTALGGWMGLNQTQIRKILA 180
Cdd:PRK08042  195 GIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYALMEHNIQRLLA 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 181 FSSISHLG--------WMTIILIYNPKLTLLTFY--MYCLMTVTVFLTlnttkTLKLSTMMISW--------------TK 236
Cdd:PRK08042  275 YHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLFKS-----VLFLGAGSVWFrtghrdieklggigKK 349

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1199894903 237 APTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTK 272
Cdd:PRK08042  350 MPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-190 2.83e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 42.38  E-value: 2.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  38 LAIIPL---ISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSG--QWDITQLNH---PISCALLTTA-----IAM 104
Cdd:PRK06473  138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLRShtlPLSTQLLLLApilvgFGI 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 105 KLGLVPFHFWFPEVLQGSSLTTAMLLSTVM-KFPPITIL------FLTSHSLNSTLLTIMAILSTALGGWMGLNQTQIRK 177
Cdd:PRK06473  218 KIPLVPFHTWLPDAHVEASTPVSVLLAGVLlKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKK 297

                         170
                  ....*....|...
gi 1199894903 178 ILAFSSISHLGWM 190
Cdd:PRK06473  298 MVAYSSIGHMGYI 310
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 80-268 4.53e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 42.06  E-value: 4.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  80 SSGQWDITQLNHPISCALLTTAI---AM-KLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITIL-----FLTSHSLN 150
Cdd:MTH00207  163 NQGHWSITNMWQTDMNNYIALSImiaAMtKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfypFLSSTYWF 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 151 STLLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIIL-IYNPKLTLLTFYMYCLMTVTVFLTLNTT-----KT 224
Cdd:MTH00207  243 NPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLgLGMPKLALFHLITHALFKALLFVCAGSLihshhHS 322

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1199894903 225 LKLSTMMISWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQ 268
Cdd:MTH00207  323 QDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-284 6.99e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 41.34  E-value: 6.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   9 FTMSLLLGTTIVISSNhWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTI---NAWSSGQW- 84
Cdd:PRK06589  122 FNLTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVIliyTKTGNLDFv 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  85 --DITQLNHPISCALLTTAIAMKLGLVPFHFWFPEVLQG----SSLTTAMLLSTVMKFPPITIL-------FLTSHSLNS 151
Cdd:PRK06589  201 sgGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAhypvSALLHAVIVVKTGLFCIYKILlyifglsYLQRIFAEF 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 152 TLLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGW--MTIILIYNPKLTLLTFYMYC--LMTVTVFLTLNTTKTLK- 226
Cdd:PRK06589  281 NWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLVShsFAKICLFYSMGSIYSLKk 360

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1199894903 227 ---LSTMMISWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAI 284
Cdd:PRK06589  361 edqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVML 421
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-267 7.98e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.06  E-value: 7.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 101 AIAMKLGLVPFHFWFPEV-----LQGSSLTTAMLLS------TVMKFPpitILFLTSHSLNSTLLTiMAILSTALGGWMG 169
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKlggyglVRLSWP---ILPLGAQNLAPAVIA-MGIVGIVYGSFAT 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 170 LNQTQIRKILAFSSISHLGWMTIILIYNP--KLTLLTFYMYCLMTVTVFL-TLNTTKTLKLSTMMISWTKA-----PTLN 241
Cdd:MTH00226  315 CRQIDVKRLVAYSSVAHMGLVSITLVTHDiiGLTGSIFIMLAHGIVSSLLfILVTILYDRHHTRLIKYYRGlsitmPIWG 394

                         170       180
                  ....*....|....*....|....*.
gi 1199894903 242 ATLMMTLLSLAGLPPLTGFLPKWLTI 267
Cdd:MTH00226  395 TIMIVTSLANVAVPPSGNFIGEYLSI 420
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
96-268 9.36e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 40.85  E-value: 9.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  96 ALLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVM-KFPPITI------LFLTSHSLNSTLLTIMAILSTALGGWM 168
Cdd:PRK07363  209 TGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLaKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALS 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 169 GLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLL----TFYMYCLMTVTVF-------LTLNTTKTLKLSTMMISWTKA 237
Cdd:PRK07363  289 AIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLgavaQMISHGLILALLFhlvgiveRKVGTRDLDVLNGLMNPIRGL 368

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1199894903 238 PTLNATLMMTLLSLAGLPPLTGFLPKWLTIQ 268
Cdd:PRK07363  369 PLTSALLVLAGMASAGIPGLVGFVAEFIVFQ 399
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 1.08e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.97  E-value: 1.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  48 HHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQWDITQL-----------NHP---ISCALLTTAIAMKLGLVPFHF 113
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATIlqdselienikGHPlflITLILIFIGAAAKSAQGPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 114 WFPEVLQGSSLTTAMLLSTVMKFPPITILFLTSHSLNST-----LLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 189 WMTIILIYNPK------LTLLTFYMYCLMTVTVFLTL------NTTKTLKLSTMMISWTKAPTLNATLMMTLLSLAGLPP 256
Cdd:PRK12649  316 YLMTMYGYTTYhepglgVAAATFHLLNHATFKACLFLvagivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPP 395


                  ....*..
gi 1199894903 257 LTGFLPK 263
Cdd:PRK12649  396 LNGFLSK 402
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 15-281 1.11e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 40.93  E-value: 1.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  15 LGTTIVISSNHWM---AIWTGLEINTLAIIPLISKYHHPRAIeaaikyFLVQAAASTLLLFSSTINAWS-SGQWDITQLN 90
Cdd:PRK06459   83 LGMAIVLTSDNYLlflAGWEIMTIPSYVAIALTKKNKRPAFV------FMAFGELSTVLILAGFAWAFIiSGTTNFSYLP 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  91 HPISCALLTTAIAMKLGLVPFHF--WFPEVLQGSSLTTAMLLSTVMK----FPPITILFLTSHSLNSTL-LTIMAI--LS 161
Cdd:PRK06459  157 SPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTlmgvYGILKMTILTQTIPIGYFgLTILAIgaFS 236

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 162 TALGGWMGLNQTQIRKILAFSSISHLGWM-----TIILIYNPKLTLLTFYMYCLMTVT---------VFLTLNTTKTLKL 227
Cdd:PRK06459  237 ILFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILYSfahsvaktgLFLSSGLQEKQSI 316

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1199894903 228 STMMISWTKAPTLNATLMMtlLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMI 281
Cdd:PRK06459  317 TYSKKIRNRWIELGLTLLA--SSLSGLLPNIGGVASWLLLESLFMFAYVLHNVI 368
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-271 2.20e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.94  E-value: 2.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 111 FHFWFPEVLQGSSLTTAMLLSTVMKFPPITIL-----FLTSHSLNSTLLTIMAILSTALGGWMGLNQTQIRKILAFSSIS 185
Cdd:MTH00032  244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 186 HLGWMTIILIYNPKLTLLTFYM--YCLMTVTVFLTLN------TTKTLKLSTMMISWTKAPTLNATLMMTLLSLAGLPPL 257
Cdd:MTH00032  324 QLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGsvihstTVDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYL 403

                         170
                  ....*....|....
gi 1199894903 258 TGFLPKWLtIQELT 271
Cdd:MTH00032  404 TGFYSKDL-ILELT 416
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-300 2.75e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 39.38  E-value: 2.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   4 YAKLIFTMSLLLGttiVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIEAAIKYFLVQAAASTLLLFSSTINAWSSGQ 83
Cdd:PRK06591  118 YGILLFAHTGYLG---MIATNDFFNLYVFIEISALSSYVLIASGNNPKSLIGAFDYLIMGSIGATLILIAIGFLLSITGS 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  84 WDITQ----LNHPISCALLTTAIA-------MKLGLVPFHFWFPEVLQGSS---------LTTAMLLSTVMKFPPITILF 143
Cdd:PRK06591  195 LNMTDiaayLQEHTNSRIITIAIGffligaiLKTAFFPMHFWMMRAYNNTAsvilvylagISTIIGIYIIYKFTYIIIGY 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 144 LTSHSLNSTLLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYNPKLTLLTfymyCLMTVTvflTLNTTK 223
Cdd:PRK06591  275 ETIKTAITNFIRPIALATLIIAPYFAYQAKNFKNIIIYSCFTQIGYVFLLYVTENGIIILP----SLLLAD---SINKIA 347

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1199894903 224 TLKLSTMMISWTKAPtLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSLLGLFFYLRLAYYS 300
Cdd:PRK06591  348 LFLIDAYNESYKREP-NKVLIIIAIICSCGLPISPLFFIKVNILELLLTQNLLLDFIIILLSSVGSLFYHYKMVLLL 423
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 104-294 4.07e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 38.31  E-value: 4.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 104 MKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILfLTSHSLNSTLLTIMAILSTALGGWMGLNqtqIRKILAFSS 183
Cdd:MTH00091   69 MKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVL-LQFFSKNFFFLLLFGLLICFFQMFLLKS---YKNLLILSS 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 184 ISHLGWMTIILIYN-PKLTLLTFYMYCLMTVtvfltlnttktlklstMMISWTKAPTLNATLMMTLLSLAGLPPLTGFLP 262
Cdd:MTH00091  145 TESFNWLILSFFFSfFNVFFLFFYYFLLMLF----------------LIPKFNNVNKLNFVSWETLLVFMNLPFSVTFFV 208

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1199894903 263 KWLTIQELTKQEMTTTAMI--IAILSLLGLFFYL 294
Cdd:MTH00091  209 KIFSLSEILKVLGFFLLFLlfLMFLSVLSLSFWL 242
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 143-300 5.21e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 38.47  E-value: 5.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 143 FLTSHSLNSTLLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMTIILIYN-PKLTLLTFYMYCLMTVTVFLTL-- 219
Cdd:MTH00209  231 SLFSSPFFSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNqPELAFFHLITHALFKALLFICAgn 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 220 ---NTTKTLKLSTMMISWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTTTAMIIAILSL-LGLFFYLR 295
Cdd:MTH00209  311 iihSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTsLTAAYSMR 390


                  ....*
gi 1199894903 296 LAYYS 300
Cdd:MTH00209  391 LSYFS 395
ndhD CHL00011
NADH dehydrogenase subunit 4
 101-192 7.16e-03

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 38.00  E-value: 7.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 101 AIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVM----KFPPITI---LFLTSHSLNSTLLTIMAILSTALGGWMGLNQT 173
Cdd:CHL00011  220 AYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILlkmgAYGLIRInmeLLPHAHSIFSPWLVIVGAIQIIYAASTSLGQR 299

                          90
                  ....*....|....*....
gi 1199894903 174 QIRKILAFSSISHLGWMTI 192
Cdd:CHL00011  300 NLKKRIAYSSVSHMGFIII 318
PRK12646 PRK12646
DUF4040 family protein;
4-272 8.72e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 38.20  E-value: 8.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903   4 YAKLIFTMSLLLGttiVISSNHWMAIWTGLEINTLAIIPLISKYHHPRAIE-AAIKYFLVQAAASTLLLFSSTINAWSSG 82
Cdd:PRK12646  113 YFYLTLFMFSMIG---IVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQfGAIQSFMITVFGGLALLVGFIMLYIMTG 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903  83 QWDIT----QLNHPISCALLTTAIAM-------KLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILF-----LTS 146
Cdd:PRK12646  190 TNNITeilgQADHIKNHGLFIPMIFMfllgaftKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFrftplLGL 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1199894903 147 HSLNSTLLTIMAILSTALGGWMGLNQTQIRKILAFSSISHLGW-MTII-----LIYNPKLTLLTFYMY------------ 208
Cdd:PRK12646  270 SNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMiMAMVgigggYAQHQQDAIASIYVFvlfaalfhlmnh 349

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1199894903 209 ----CLMTVTVFLTLNTTKTLKLSTMMISWTKAPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTK 272
Cdd:PRK12646  350 aifkCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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