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Conserved domains on  [gi|1198285467|gb|ART89309|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Trimerotropis sp. JU1]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-291 6.56e-104

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 314.39  E-value: 6.56e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPMLLTYNYGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  81 AGSMIHNLSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 161 SFRLFYYSMMGDNNFYPSYFFDDKNYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1198285467 241 ISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSNSL 291
Cdd:MTH00165  472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSF 522
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-291 6.56e-104

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 314.39  E-value: 6.56e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPMLLTYNYGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  81 AGSMIHNLSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 161 SFRLFYYSMMGDNNFYPSYFFDDKNYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1198285467 241 ISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSNSL 291
Cdd:MTH00165  472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSF 522
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-241 4.13e-40

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 147.22  E-value: 4.13e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPML-LTYNYGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:COG1009   263 RLSPLFaLSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFL 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  80 CAGSMIHNLSdS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILE-VVCLSWVNFLIFFLYFISTGLTA 158
Cdd:COG1009   343 GAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTA 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 159 SYSFRLFYYSMMGDNNFYPSYFFDDKNYFISFGMIGLLFVAVFGGSFLSWL---------IFPVPYMIVLPWYLSFLTLF 229
Cdd:COG1009   422 FYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLL 501

                         250
                  ....*....|..
gi 1198285467 230 VVIVGSYLGYLI 241
Cdd:COG1009   502 LSLLGIALGYLL 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 19-241 6.31e-36

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 135.49  E-value: 6.31e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  19 GCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDS*DI*FMG 98
Cdd:TIGR01974 284 GAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMG 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  99 S*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYPS 178
Cdd:TIGR01974 364 GLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHEAD 443

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1198285467 179 YFFDDKNYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIV-----------LPWYLSFLTLFVVIVGSYLGYLI 241
Cdd:TIGR01974 444 AHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSPTAVAILGILLAYLL 517
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 160-291 6.74e-27

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 103.40  E-value: 6.74e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 160 YSFRLFYYSMMGDNNFYPSYFFDDKNYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGY 239
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1198285467 240 LISDFDYFYGLFSLNFlSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSNSL 291
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQI 131
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-291 6.56e-104

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 314.39  E-value: 6.56e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPMLLTYNYGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  81 AGSMIHNLSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 161 SFRLFYYSMMGDNNFYPSYFFDDKNYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1198285467 241 ISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSNSL 291
Cdd:MTH00165  472 LSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSF 522
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-287 5.22e-68

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 221.06  E-value: 5.22e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPML-LTYNYGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:MTH00209  227 RFFPSLfSSPFFSMSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFI 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  80 CAGSMIHNLSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:MTH00209  307 CAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAA 386

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 160 YSFRLFYYSMMGDNNFYPSYFFDDKNYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGY 239
Cdd:MTH00209  387 YSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMY 466

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1198285467 240 LISDfdyfYGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNS 287
Cdd:MTH00209  467 MVLK----KNFFLIKGYKVNYFLSQMWFLPDLSSQPVNKFTMKLSKTM 510
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-293 1.54e-67

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 219.71  E-value: 1.54e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPML-LTYNYGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:MTH00151  228 RFFPFLsSSSGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFL 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  80 CAGSMIHNLSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:MTH00151  308 CAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTAL 387

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 160 YSFRLFYYSMMGDNNFYPSYFFDDKNYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGY 239
Cdd:MTH00151  388 YSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSF 467

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1198285467 240 LISDFDYFYGLFSLNflsfVSFVGSMWFMPFLSTNYISYLPLKFGYNSSNSLNY 293
Cdd:MTH00151  468 GFWDSGFSSSKMVKL----SFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDM 517
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-292 1.38e-63

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 209.62  E-value: 1.38e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPML-LTYNYGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:MTH00207  231 RFYPFLsSTYWFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFV 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  80 CAGSMIHNLSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:MTH00207  311 CAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAA 390

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 160 YSFRLFYYSMMGDNNFYPSYFFDDKNYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGY 239
Cdd:MTH00207  391 YSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAW 470

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1198285467 240 LISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSNSLN 292
Cdd:MTH00207  471 LFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLD 523
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-288 3.76e-50

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 174.37  E-value: 3.76e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPMLLTYNY-GW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:MTH00211  256 RLSPLFQNNQLiLGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFM 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  80 CAGSMIHNLSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:MTH00211  336 CSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAA 415

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 160 YSFRLFYYSMMGDNNFYPSYFFDDKNYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIV-LPWYLSFLTLFVVIVGSYLG 238
Cdd:MTH00211  416 YSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGLLLG 495

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1198285467 239 ylisdFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSS 288
Cdd:MTH00211  496 -----LELVNLTHKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGQTLS 540
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-177 2.61e-45

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 161.48  E-value: 2.61e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPMLLTYNYGW**-L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:MTH00004  261 RTHPLLQNNQTALTIcLCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFL 340

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  80 CAGSMIHNLSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTAS 159
Cdd:MTH00004  341 CSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAA 420

                         170
                  ....*....|....*...
gi 1198285467 160 YSFRLFYYSMMGDNNFYP 177
Cdd:MTH00004  421 YSLRMILLVQTGFPRTPP 438
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 22-234 6.35e-44

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 157.71  E-value: 6.35e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  22 TMFMAgLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDS*DI*FMGS*V 101
Cdd:MTH00108  285 TLFTA-ICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLF 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 102 N*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYPSYFF 181
Cdd:MTH00108  364 KTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRFPPLITI 443

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1198285467 182 DDKNYFISFGMIGLLFVAVFGGSFLSWLIFP--VPYMiVLPWYLSFLTLFVVIVG 234
Cdd:MTH00108  444 NENNPLLINPIKRLLLGSIFAGFLISNNIPPttIPQM-TMPLYLKLTALAVTILG 497
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 16-261 3.34e-43

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 155.90  E-value: 3.34e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  16 L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDS*DI* 95
Cdd:MTH00208  304 LILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLR 383

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  96 FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNF 175
Cdd:MTH00208  384 KMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRIIFFCFLNNPSF 463

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 176 YPSYFFDDKNYFISFGMIGLLFVAVFGGSFLSWLIFPVPyMIVLPWYLSFLTLFVVIVGSYLGYLISDFdYFYGLFSLNF 255
Cdd:MTH00208  464 SPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAAFSFSFLLS-LSSNPINSNF 541


                  ....*.
gi 1198285467 256 LSFVSF 261
Cdd:MTH00208  542 FSFLSN 547
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 16-242 2.06e-41

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 150.83  E-value: 2.06e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  16 L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDS*DI* 95
Cdd:MTH00066  275 LCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIR 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  96 FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNF 175
Cdd:MTH00066  355 KMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRS 434

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1198285467 176 YPSYFFDDKNYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIV-LPWYLSFLTLFVVIVGSYLGYLIS 242
Cdd:MTH00066  435 LPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMKPQILtMPTFMKLAALLVTLLGLLIALDLA 502
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-241 4.13e-40

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 147.22  E-value: 4.13e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPML-LTYNYGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:COG1009   263 RLSPLFaLSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFL 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  80 CAGSMIHNLSdS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILE-VVCLSWVNFLIFFLYFISTGLTA 158
Cdd:COG1009   343 GAGSVIHATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTA 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 159 SYSFRLFYYSMMGDNNFYPSYFFDDKNYFISFGMIGLLFVAVFGGSFLSWL---------IFPVPYMIVLPWYLSFLTLF 229
Cdd:COG1009   422 FYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLL 501

                         250
                  ....*....|..
gi 1198285467 230 VVIVGSYLGYLI 241
Cdd:COG1009   502 LSLLGIALGYLL 513
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 35-177 3.71e-39

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 144.59  E-value: 3.71e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  35 DLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDS*DI*FMGS*VN*MPLTS**FNVS 114
Cdd:MTH00137  302 DIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIG 381

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1198285467 115 SLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYP 177
Cdd:MTH00137  382 SLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVVFFVSMGHPRFNP 444
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 19-241 6.31e-36

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 135.49  E-value: 6.31e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  19 GCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDS*DI*FMG 98
Cdd:TIGR01974 284 GAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMG 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  99 S*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYPS 178
Cdd:TIGR01974 364 GLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHEAD 443

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1198285467 179 YFFDDKNYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIV-----------LPWYLSFLTLFVVIVGSYLGYLI 241
Cdd:TIGR01974 444 AHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSPTAVAILGILLAYLL 517
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 19-285 1.23e-35

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 134.75  E-value: 1.23e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  19 GCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDS*DI*FMG 98
Cdd:MTH00210  282 GALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRKMG 361

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  99 S*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYPS 178
Cdd:MTH00210  362 GLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSKKE 441

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 179 YFF--DDKNYFISFGMIGLLFVAVFGGS-----FLSWLIFPvpymiVLPWYLSFLTLFVVIVGSYLGYLISDFDYFY--- 248
Cdd:MTH00210  442 VFIgvHESSWNITFPLLLLAFGSIFVGYlgkevVLSNVIPP-----IVPNSIKMIPLLFSLLGALLAFVIYNSMVFLiki 516

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1198285467 249 ---GLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGY 285
Cdd:MTH00210  517 srrGVSIRLYHVIYTFLNSAWQFNYVINHFIVKNIWKFGH 556
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 19-241 1.22e-34

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 132.20  E-value: 1.22e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  19 GCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDS*DI*FMG 98
Cdd:PRK06590  288 GAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMG 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  99 S*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNnfyps 178
Cdd:PRK06590  368 GLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEAA-FANGHINLFVAGLVGAFLTAFYSFRLIFLVFHGKE----- 441

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 179 yffDDKNY-------FISFGMIGLLFVAVFGG-----SFLSWLIFP-----VPYMIVLPWYLSFLTLFVVIVGSYLGYLI 241
Cdd:PRK06590  442 ---KEKIHhphespaVMTLPLIVLAVLSVFAGalivpPFLGVLPLTtelahGEAEHHLPVWVALLPLVVALAGIALAWLL 518
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 19-256 6.16e-34

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 130.20  E-value: 6.16e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  19 GCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSDS*DI*FMG 98
Cdd:MTH00020  281 GSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRKMG 360

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  99 S*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGDNNFYPS 178
Cdd:MTH00020  361 GLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFLSNTNLKKA 440

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 179 YFFD--DKNYFISFGMIGLLFVAVFGGSFLSWLIF--------PVPYMI-VLPWYLSFLTLFVVIV-GSYLGYLISDFDY 246
Cdd:MTH00020  441 VFFHlhEGDWNLLLPLGILALGSIFVGYLAKEMIWsfqitlppIVPLSIkLLPVFLSLGGIGLVIIlYFYSSKTFRVPFS 520

                         250
                  ....*....|
gi 1198285467 247 FYGLFSLNFL 256
Cdd:MTH00020  521 FIGRNSYTFL 530
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
18-172 3.65e-28

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 113.97  E-value: 3.65e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  18 FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNLSD------- 90
Cdd:PRK07376  297 TGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEvvghdpv 376

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  91 -S*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSwvNFLIFFLYFISTGLTASYSFRLFYYSM 169
Cdd:PRK07376  377 lAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMYFLTF 454


                  ...
gi 1198285467 170 MGD 172
Cdd:PRK07376  455 EGE 457
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 160-291 6.74e-27

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 103.40  E-value: 6.74e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 160 YSFRLFYYSMMGDNNFYPSYFFDDKNYFISFGMIGLLFVAVFGGSFLSWLIFPVPYMIVLPWYLSFLTLFVVIVGSYLGY 239
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1198285467 240 LISDFDYFYGLFSLNFlSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSNSL 291
Cdd:pfam06455  81 ELSNLSNKQLKKSLNF-NLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQI 131
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-153 6.06e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.54  E-value: 6.06e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPMLLTYNYGW**L*F--GCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYG---LAFFHLLTHALFKA 75
Cdd:pfam00361 134 RRSLLYLPSSPFIQQILLilAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFSA 213

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1198285467  76 LLFMCAGSMIHNLSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFIS 153
Cdd:pfam00361 214 GLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ndhF CHL00025
NADH dehydrogenase subunit 5
 35-185 9.17e-24

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 101.12  E-value: 9.17e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  35 DLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNL--------SDS*DI*FMGS*VN*MPL 106
Cdd:CHL00025  314 DIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPI 393

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 107 TS**FNVSSLSLCGMPFLAGFYSKDLILEVvclSWVNFLIF-FLYFISTGLTASYSFRLFYYSMMGDNNFYPSYFFDDKN 185
Cdd:CHL00025  394 TKTTFLLGTLSLCGIPPLACFWSKDEILND---SWLYSPIFaIIAWSTAGLTAFYMFRIYLLTFEGHLRVHFQNYSGKKN 470
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 18-136 4.14e-21

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 93.10  E-value: 4.14e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  18 FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSM-GYYGLAFFHLLTHALFKALLFMCAGSMIHNLS-DS*DI* 95
Cdd:MTH00032  295 FGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDMR 374

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1198285467  96 FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEV 136
Cdd:MTH00032  375 KMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 11-167 6.33e-21

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 91.75  E-value: 6.33e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  11 YGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG-YYGL--AFFHLLTHALFKALLFMCAGSMIHN 87
Cdd:COG0651   271 LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGtPLGLagALFHLLNHALAKALLFLAAGAIERA 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  88 LsDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTASYSFRLFYY 167
Cdd:COG0651   351 T-GTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-292 3.07e-19

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 87.28  E-value: 3.07e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPMLLTYNYGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMC 80
Cdd:MTH00095  216 NFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQ 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  81 AGSMIHNLSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASY 160
Cdd:MTH00095  296 VGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGY 375

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 161 SFRLFYYSMMGDNNFYPSYFFDDKNYFISFGMIgllfvaVFGGSFLSWLIFpvpYMIVLPWYLSFLTLFVVIVGSYLGYL 240
Cdd:MTH00095  376 SYRLWKSFFLSFSKVVNVYSSSVLMNFLSLMLV------FFSVFFLWWLNF---NLLNLPSLFLYLDFYVPLFYLFMIML 446

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1198285467 241 ISDFDYFYGLFSLNFLSFVSFVGSMWFMPFLSTNYISYLPLKFGYNSSNSLN 292
Cdd:MTH00095  447 FSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGYKGFNFFS 498
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-171 9.92e-18

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 83.00  E-value: 9.92e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  10 NYGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLG---LMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIH 86
Cdd:PRK08375  269 GLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGyilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEV 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  87 NlSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSK-DLILEVVCLSWVNFLIFFLyfISTGLTASYSFRLF 165
Cdd:PRK08375  349 T-YGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSLLALLYFLRIW 425


                  ....*.
gi 1198285467 166 YYSMMG 171
Cdd:PRK08375  426 YRAFFG 431
PRK12646 PRK12646
DUF4040 family protein;
1-135 1.58e-15

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 76.72  E-value: 1.58e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPML-LTYNYGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG-------------YYGL---- 62
Cdd:PRK12646  262 RFTPLLgLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaiasIYVFvlfa 341

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1198285467  63 AFFHLLTHALFKALLFMCAGSMIHNlSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12646  342 ALFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 13-171 1.96e-15

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 76.50  E-value: 1.96e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  13 W**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG------------YYGLAF----FHLLTHALFKAL 76
Cdd:PRK12645  275 WTVTLVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGaaslhyqgddskIYAAAItaaiFHLINHATFKGS 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  77 LFMCAGSMIHNlSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVC---------LSWVNFLIF 147
Cdd:PRK12645  355 LFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFESMLnateanlfsLDTWGVLFP 433

                         170       180
                  ....*....|....*....|....
gi 1198285467 148 FLYFISTGLTASYSFRLFYYSMMG 171
Cdd:PRK12645  434 VIAWVASVFTFVYSIIFIFKTFFG 457
PRK12650 PRK12650
DUF4040 family protein;
1-135 2.59e-15

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 76.23  E-value: 2.59e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPmLLTYNYGW**L*FGC--MTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY---YGLAFFHLLTHALFKA 75
Cdd:PRK12650  260 RFSP-VFHDVAVWNWLLIIVgmITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTpfaLTAAVVHTLAHALFKS 338

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  76 LLFMCAGSMIHNlSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12650  339 SLFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 13-166 8.40e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 74.58  E-value: 8.40e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  13 W**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG-----YYGLAFfhLLTHALFKALLFMCAGSMIHN 87
Cdd:PRK12644  268 PTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGtrdaaLAGLAM--LLAHALFKAALFLVVGIIDHS 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  88 lSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVV----CLSWVNFLIFFLYFISTGLTASYSFR 163
Cdd:PRK12644  346 -TGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGPAGPVVLAGIVLGSILTVAYSLR 424


                  ...
gi 1198285467 164 LFY 166
Cdd:PRK12644  425 FLW 427
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-137 1.01e-14

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 74.19  E-value: 1.01e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPML-LTYNYGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGL---AFFHLLTHALFKAL 76
Cdd:PRK12647  247 RLNPVLgGTPLWQTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAikaAVLFLVAHSLYKGA 326

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1198285467  77 LFMCAGSMIHNlSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVV 137
Cdd:PRK12647  327 LFMVAGIIDHE-TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEAL 386
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-171 1.58e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 73.59  E-value: 1.58e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   2 FSPMLLTYNYGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGL---------------AFFH 66
Cdd:PRK08376  277 YGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYH 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  67 LLTHALFKALLFMCAGSMIHNLSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLswVNFLI 146
Cdd:PRK08376  357 IVNHALYKALLFLTAGAVIYETGTR-NLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPIL 433

                         170       180
                  ....*....|....*....|....*
gi 1198285467 147 FFLYFISTGLTASYSFRLFYYSMMG 171
Cdd:PRK08376  434 GVIAMIGSVLTLASFVKVFHTAFFG 458
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 19-163 9.59e-14

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 71.37  E-value: 9.59e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  19 GCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSMIHNlSDS*DI* 95
Cdd:PRK12648  278 GLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSpLAAvaAIFHIINHATFKASLFMAAGIIDHE-TGTRDMR 356

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1198285467  96 FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDL----ILEVVCLSWVNFLIFFLYFISTGLTASYSFR 163
Cdd:PRK12648  357 RLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLR 428
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 19-166 1.18e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 70.77  E-value: 1.18e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  19 GCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSMIHNlSDS*DI* 95
Cdd:PRK12667  302 GAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTqLGLaaALFHIINHAIAKSLLFLASGVFIHA-AGTRDID 380

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1198285467  96 FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSwvNFLIFFLY-FISTGLTASYSFRLFY 166
Cdd:PRK12667  381 ELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLES--GFYLPALVlLIASAISLVGYFRAWY 450
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 19-135 1.59e-12

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 67.55  E-value: 1.59e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  19 GCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYY-------GLAFFHLLTHALFKALLFMCAGSMIHNLSdS 91
Cdd:PRK12649  285 GMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTYhepglgvAAATFHLLNHATFKACLFLVAGIVAHEAA-T 363

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1198285467  92 *DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12649  364 RDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 11-135 1.17e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 64.75  E-value: 1.17e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  11 YGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSM----GYYGL----------AFFHLLTHALFKAL 76
Cdd:PRK08667  269 WGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLyvifGVYGLdtlallalggALFHSLNHALFKSL 348

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1198285467  77 LFMCAGSMIHNLSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK08667  349 LFLTAGSVVHATGTR-NIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 13-164 1.25e-11

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 64.79  E-value: 1.25e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  13 W**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYG---LAFFHLLTHALFKALLFMCAGSMIHNLS 89
Cdd:PRK08377  274 KLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAgvdAGVFHMINHAIVKALLFLAVGYVGITLG 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1198285467  90 DS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILeVVCLSWVNFLIFFLYFISTGLTASYSFRL 164
Cdd:PRK08377  354 GTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 22-200 2.47e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 63.68  E-value: 2.47e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  22 TMFMAGLGANFEFDLKSIIALSTLSQLGLMM---SILSMGYYGLAFFHLLTHALFKALLFMCAGSmIHNLSDS*DI*FMG 98
Cdd:PRK06589  290 SIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGS-IYSLKKEDQVDKLH 368

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  99 S*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLS---WVNFLIFFLYFISTGLTASYSFRLFYysmmgdNNF 175
Cdd:PRK06589  369 GTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYLLKILS------SIY 442

                         170       180
                  ....*....|....*....|....*
gi 1198285467 176 YPSYffdDKNYFISFGMIGLLFVAV 200
Cdd:PRK06589  443 KPSL---SENSFITKSLPYLMQISV 464
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 12-140 1.60e-10

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 61.44  E-value: 1.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  12 GW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMsiLSMGY------YGL----------AFFHLLTHALFKA 75
Cdd:PRK06521  276 GVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIF--VGLGLamvfiaYGMpllaalaltaALYHLLNHALFKS 353

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1198285467  76 LLFMCAGSMIHNLSdS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLS 140
Cdd:PRK06521  354 LLFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 19-129 4.11e-10

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 60.31  E-value: 4.11e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  19 GCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSMIHNlSDS*DI*FMG 98
Cdd:PRK07390  291 GTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQDLTELG 369

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1198285467  99 S*VN*MPLTS**FNVSSLSLCGMPFLAGFYS 129
Cdd:PRK07390  370 GLWSRMPATTLAFLVGSAGLVALLPLGGFWA 400
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 19-166 4.27e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 60.01  E-value: 4.27e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  19 GCMTMFMAGLGANFEFDLKSIIALSTLSQLG-LMMSILSMGYYGLA--FFHLLTHALFKALLFMCAGSMIHNlSDS*DI* 95
Cdd:PRK08668  279 GNISIIVGTLMAILQEDIKKLIAYSSVANGGyILVGLGLGTSLGFAggLFHVFNHALFKGLFFLIFAAVIYR-TGTTKIS 357

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1198285467  96 FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTASYSFRLFY 166
Cdd:PRK08668  358 EMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL-ISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 18-135 8.29e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 59.20  E-value: 8.29e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  18 FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGyyglAFFHLlTHALFKALLFMCAGSmIHNLSDS*DI*FM 97
Cdd:PRK07234  251 FGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYAL-AHGLVKSTLFLCAGA-LPSRNFTELISQM 324

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1198285467  98 GS*VN*MPLTs**fnVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK07234  325 LGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 1-243 1.90e-09

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 57.97  E-value: 1.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPMLLTYNYGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMC 80
Cdd:MTH00063  209 RYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFML 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  81 AGSMIHNLSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLYFISTGLTASY 160
Cdd:MTH00063  289 VGDVMSGSGGSQSSNCVYSSILYGSWNLFYLFLLVLGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLY 368

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467 161 SFRLFYYSMMGDNNFYPSYFFDdknYFISFGMigllfvaVFGGSFLSWLIFP-VPYMIVLPWYLSFLTLFVVIVGSYLGY 239
Cdd:MTH00063  369 SFRLCLILFGVKSSLSSGVRFL---FFNSGLM-------VFLWLFINYYVFLlLDEVVYLGVFISLVLLLVQLLGLLVGV 438


                  ....
gi 1198285467 240 LISD 243
Cdd:MTH00063  439 LFYD 442
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 16-177 1.91e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 58.04  E-value: 1.91e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  16 L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLM-MSILSMGYYGL--AFFHLLTHALFKALLFMCAGSMIHnLSDS* 92
Cdd:PRK07691  279 LILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlVGVAMMTESGMigAIYYLIHDMIVKAALFLLIGIMIK-ITGTT 357

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  93 DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGD 172
Cdd:PRK07691  358 DLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGT-FEAGFYVSGIIVLLSSLLVLYSVIKIFLKGFWGE 436


                  ....*
gi 1198285467 173 NNFYP 177
Cdd:PRK07691  437 PKGYD 441
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 11-127 3.62e-09

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 57.14  E-value: 3.62e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  11 YGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLA--------------FFHLLTHALFKAL 76
Cdd:PRK08042  244 WGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSV 323

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1198285467  77 LFMCAGSMIHNlSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGF 127
Cdd:PRK08042  324 LFLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 11-171 4.72e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 56.63  E-value: 4.72e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  11 YGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLM-MSILSMGYYGL--AFFHLLTHALFKALLFMCAGsMIHN 87
Cdd:COG1008   274 FAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAVLQMVSHGLITAALFLLVG-VLYD 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  88 LSDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILevVCLSWVNFLIFFLYFISTGLTASYSFRLFYY 167
Cdd:COG1008   353 RTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL--LGAFQVNPWLAILAALGLILTAAYLLWMYQR 430


                  ....
gi 1198285467 168 SMMG 171
Cdd:COG1008   431 VFFG 434
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
24-134 5.83e-09

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 56.83  E-value: 5.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  24 FMAGLGANF---EFDLKSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSMIHNLSDS*DI*FM 97
Cdd:PRK12668  249 AMAVYGVFFallENDLRRLLSYHIVSQVGYMVAGIGIGTaLAIngAVAHAFNHILYKGLLFMSAGAVLYRTGTE-KLTEL 327

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1198285467  98 GS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK12668  328 GGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 12-134 1.52e-08

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 55.37  E-value: 1.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  12 GW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGL------AFFHLLTHALFKALLFMCAGSMI 85
Cdd:PRK06525  272 GYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSrlalegSIAYIFNHAFAKSLFFLVAGALS 351

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1198285467  86 HNLSdS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK06525  352 YSCG-TRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-83 1.30e-07

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 52.39  E-value: 1.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   1 RFSPMLLTYNYG-W**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFM 79
Cdd:PRK08168  251 RFAPLLEQAPPArWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFL 330


                  ....
gi 1198285467  80 CAGS 83
Cdd:PRK08168  331 SASE 334
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 35-172 3.20e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 51.36  E-value: 3.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  35 DLKSIIALSTLSQLG-LMMSILSMGYYGL--AFFHLLTHALFKALLFMCAGSMIHNLSdS*DI*FMGS*VN*MPLTS**F 111
Cdd:PRK05846  300 DIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFF 378

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1198285467 112 NVSSLSLCGMPFLAGFYSKDLILevVCLSWVNFLIFFLYFISTGLTASYSFRLFYYSMMGD 172
Cdd:PRK05846  379 LFFAMASLGLPGTSGFVGEFLIL--LGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGP 437
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-137 1.80e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 48.96  E-value: 1.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   5 MLLTYNYGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMG-YYGL--AFFHLLTHALFKALLFMCA 81
Cdd:PRK12662  272 VFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNtYYGLaaAVAYIVNHSIVKSALFMVS 351

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1198285467  82 GSMIHNLsDS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVV 137
Cdd:PRK12662  352 GSISYHF-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAF 406
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 35-83 3.31e-05

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 45.03  E-value: 3.31e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1198285467  35 DLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGS 83
Cdd:PRK08601  289 DYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSGS 337
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
19-174 1.26e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 43.40  E-value: 1.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  19 GCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGL---AFFHLLTHALFKALLFMCAGSMIHnLSDS*DI* 95
Cdd:PRK12663  279 AAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGYRSLQ 357

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  96 FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILEVVcLSWVNFLIFFLYFIsTGLTASYS-FRLFYYSMMGDNN 174
Cdd:PRK12663  358 YLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGA-LDNGAYILLALMLI-TSLITMYSlFRIFFLAYWGDKD 435
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 5-211 2.28e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 39.04  E-value: 2.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467   5 MLLTYNYGW**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAFFHLLTHALFKALLFMCAGSM 84
Cdd:MTH00160  136 LLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFN 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  85 IHNLSDS*DI*FMGS*VN*MPLTS**fnvssLSLCGMPFLAGFYSKDLILEVVCLSWVNFLIFFLyFISTGLTASYSFRL 164
Cdd:MTH00160  216 IFFLNQLFNSNNKSKKIKFLLFLNL------LSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFIL-IMSSLITLYFYLRI 288

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1198285467 165 FYYSMMGdNNFYPSYFFDDKNYFISFGMIGLLFVAVFGGSFLSWLIF 211
Cdd:MTH00160  289 SYSSLML-NYNKNKWNLKKKKNKFSLILNFLSFISLFGLILSSLLFL 334
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 22-135 2.73e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 39.18  E-value: 2.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  22 TMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY---YGLAFFHLLTHALFKALLFMCAGsMIHNLSDS*DI*FMG 98
Cdd:PRK12665  283 TMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTvagLSGAIYYVAHHITVQTTLFLVVG-LIERQAGSSSLRRLG 361

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1198285467  99 S*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12665  362 GLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 16-134 3.42e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 38.76  E-value: 3.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  16 L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYyGLAFF----HLLTHALFKALLFMCAGSMIHNlSDS 91
Cdd:PRK06458  285 LIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGG-PLGIFaallHMLNHSLTKSAIFFASGNVLQK-YGT 362

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1198285467  92 *DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK06458  363 RDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLIL 405
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 16-165 3.98e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 38.58  E-value: 3.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  16 L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGYYGLAF---FHLLTHALFKALLFMCAGsMIHNLSDS* 92
Cdd:PRK08676  277 IGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHRQYRSD 355

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1198285467  93 DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLIL-EVVCLS-WVNFLIFFLYFISTGLTASYSFRLF 165
Cdd:PRK08676  356 RFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILlQLGGISvWLVLAVLLLLLLAASSFAIFLLKAF 430
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 22-130 4.47e-03

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 38.17  E-value: 4.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  22 TMFMAGLGANFEFDLKSIIALSTLSQLG-LMMSILSMGYYGL--AFFHLLTHALFKALLFMCAGSMIHNLSDS*DI*FMG 98
Cdd:COG1007   279 SMTVGNLAALAQTNVKRMLAYSSIAHAGyLLLGLAAGTPLGVsaALFYLLAYLFMNLGAFAVILLLSRKGGEAEEIEDLA 358

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1198285467  99 S*VN*MPLTS**FNVSSLSLCGMPFLAGFYSK 130
Cdd:COG1007   359 GLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
13-135 9.07e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 37.32  E-value: 9.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1198285467  13 W**L*FGCMTMFMAGLGANFEFDLKSIIALSTLSQLGLMMSILSMGY-YGL--AFFHLLTHALFKALLFMCAGSmIHNLS 89
Cdd:PRK06277  267 GVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTpLGIvaGIFHAINHVIYKSALFLGAGI-VSYRT 345

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1198285467  90 DS*DI*FMGS*VN*MPLTS**FNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK06277  346 KTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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