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Conserved domains on  [gi|1197710330|ref|YP_009368205|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Lepilemur seali]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009566)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177166  Cd Length: 318  Bit Score: 556.54  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   1 MFFTNLLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALF 80
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  81 IALIMWAPLPMPHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSF 160
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 161 TLSTLATTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1197710330 241 LFLGTLYKPNMPETYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPPQM 318
Cdd:MTH00104  241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 556.54  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   1 MFFTNLLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALF 80
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  81 IALIMWAPLPMPHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSF 160
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 161 TLSTLATTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1197710330 241 LFLGTLYKPNMPETYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPPQM 318
Cdd:MTH00104  241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
NADHdh pfam00146
NADH dehydrogenase;
6-303 1.30e-112

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 328.28  E-value: 1.30e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   6 LLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALFIALIM 85
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  86 WAPLPMPHPLI--NLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLS 163
Cdd:pfam00146  82 FAVIPFGPGLVlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 164 TLATTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFL 243
Cdd:pfam00146 162 EIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 244 GTLYKPNMPEtYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMW 303
Cdd:pfam00146 242 GGWLGPFPLP-GLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 6-299 4.52e-100

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 297.43  E-value: 4.52e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   6 LLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALFIALIM 85
Cdd:COG1005    15 ALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLA 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  86 WAPLPM--PHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLS 163
Cdd:COG1005    95 FAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLS 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 164 TLATTQE-HLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLF 242
Cdd:COG1005   175 EIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLF 254

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197710330 243 LGTLYKPNMPETYTTNFTTK-----ALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 299
Cdd:COG1005   255 LGGWLGPFPILPLGGLPGILwfllkTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 556.54  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   1 MFFTNLLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALF 80
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  81 IALIMWAPLPMPHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSF 160
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 161 TLSTLATTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1197710330 241 LFLGTLYKPNMPETYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPPQM 318
Cdd:MTH00104  241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 4-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 506.74  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   4 TNLLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALFIAL 83
Cdd:MTH00111    9 INPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLAL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  84 IMWAPLPMPHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLS 163
Cdd:MTH00111   89 TIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQ 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 164 TLATTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFL 243
Cdd:MTH00111  169 TLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILFL 248

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1197710330 244 GTLYKPNMPETYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPPQM 318
Cdd:MTH00111  249 NPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-317 1.98e-173

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 482.97  E-value: 1.98e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   1 MFFTNLLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALF 80
Cdd:MTH00071    6 SLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALT 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  81 IALIMWAPLPMPHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSF 160
Cdd:MTH00071   86 LALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGF 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 161 TLSTLATTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:MTH00071  166 SLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTI 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1197710330 241 LFLGTLYKPNMPETYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPPQ 317
Cdd:MTH00071  246 LFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPPM 322
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 5-318 3.59e-172

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 479.87  E-value: 3.59e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   5 NLLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALFIALI 84
Cdd:MTH00134   11 NPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALT 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  85 MWAPLPMPHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLST 164
Cdd:MTH00134   91 LWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQT 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 165 LATTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFLG 244
Cdd:MTH00134  171 FNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLG 250

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1197710330 245 TLYKPNMPETYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPPQM 318
Cdd:MTH00134  251 ASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQL 324
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 5-316 3.40e-142

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 403.52  E-value: 3.40e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   5 NLLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALFIALI 84
Cdd:MTH00218    7 NLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  85 MWAPLPMPHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLST 164
Cdd:MTH00218   87 LWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 165 LATTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFLG 244
Cdd:MTH00218  167 FNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILFLG 246

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197710330 245 TLYKpnmpetyTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPP 316
Cdd:MTH00218  247 TSLT-------TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-316 2.77e-137

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 391.65  E-value: 2.77e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   1 MFFTNLLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALF 80
Cdd:MTH00040    5 LFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLF 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  81 IALIMWAPLPMPHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSF 160
Cdd:MTH00040   85 LALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSF 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 161 TLSTLATTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:MTH00040  165 SLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVI 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1197710330 241 LFLG-TLYKPNMPETYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPP 316
Cdd:MTH00040  245 LFLGgGSPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 4-312 3.33e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 337.48  E-value: 3.33e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   4 TNLLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALFIAL 83
Cdd:MTH00195    6 IHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  84 IMWAPLPMPHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLS 163
Cdd:MTH00195   86 ILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFT 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 164 TLATTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFL 243
Cdd:MTH00195  166 IMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFL 245

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1197710330 244 GTlykpnmpeTYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMS 312
Cdd:MTH00195  246 GG--------GGTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALN 306
NADHdh pfam00146
NADH dehydrogenase;
6-303 1.30e-112

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 328.28  E-value: 1.30e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   6 LLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALFIALIM 85
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  86 WAPLPMPHPLI--NLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLS 163
Cdd:pfam00146  82 FAVIPFGPGLVlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 164 TLATTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFL 243
Cdd:pfam00146 162 EIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 244 GTLYKPNMPEtYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMW 303
Cdd:pfam00146 242 GGWLGPFPLP-GLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-311 9.07e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 326.34  E-value: 9.07e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   1 MFFTNLLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALF 80
Cdd:MTH00193    3 MMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  81 IALIMWAPLPMPHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSF 160
Cdd:MTH00193   83 LSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSF 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 161 TLSTLATTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:MTH00193  163 NLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVL 242

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1197710330 241 LFLGTLYKPNMpetyttnFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILM 311
Cdd:MTH00193  243 MFLGGDLLSLL-------FYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 7-302 5.40e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 321.82  E-value: 5.40e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   7 LLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALFIALIMW 86
Cdd:MTH00143    8 VFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLW 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  87 APLPMPHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLSTLA 166
Cdd:MTH00143   88 QLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEIS 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 167 TTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFLGTL 246
Cdd:MTH00143  168 ESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGS 247

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1197710330 247 YKPNMpeTYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCM 302
Cdd:MTH00143  248 SVLFL--LGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILV 301
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 1-316 4.26e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 307.42  E-value: 4.26e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   1 MFFTNLLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALF 80
Cdd:MTH00054    3 IIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  81 IALIMWAPLPMPHP--LINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSG 158
Cdd:MTH00054   83 LAFIAWGVIPYGEGvvLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 159 SFTLSTLATTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALT 238
Cdd:MTH00054  163 SLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFG 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 239 TMLFLGTLYKPNMPETYTTNFTTK---ALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIP 315
Cdd:MTH00054  243 VILFLGGWLVISGPTSYFSNFVWFgikIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALP 322


                  .
gi 1197710330 316 P 316
Cdd:MTH00054  323 P 323
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 1-307 5.25e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 306.58  E-value: 5.25e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   1 MFFTNLLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALF 80
Cdd:MTH00225    2 SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  81 IALIMWAPLPMPHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSF 160
Cdd:MTH00225   82 LSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTY 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 161 TLSTLATTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:MTH00225  162 NLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSI 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1197710330 241 LFLGTLYkpnmpETYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISL 307
Cdd:MTH00225  242 LFFGGFF-----VTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 6-299 4.52e-100

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 297.43  E-value: 4.52e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   6 LLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALFIALIM 85
Cdd:COG1005    15 ALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLA 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  86 WAPLPM--PHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLS 163
Cdd:COG1005    95 FAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLS 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 164 TLATTQE-HLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLF 242
Cdd:COG1005   175 EIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLF 254

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197710330 243 LGTLYKPNMPETYTTNFTTK-----ALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 299
Cdd:COG1005   255 LGGWLGPFPILPLGGLPGILwfllkTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 6-316 1.27e-99

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 296.26  E-value: 1.27e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   6 LLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALFIALIM 85
Cdd:MTH00216   12 ILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIV 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  86 WAPLPMPHPLI--NLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLS 163
Cdd:MTH00216   92 WGVIPYERGVLisDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSIT 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 164 TLATTQEH-LWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLF 242
Cdd:MTH00216  172 EIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILF 251

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1197710330 243 LGTLYKPNMPETYTTNFTTK-ALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPP 316
Cdd:MTH00216  252 LGGWLSPIKYFKGGAGWFGLkVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-303 7.65e-95

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 283.62  E-value: 7.65e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   1 MFFTNLLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALF 80
Cdd:PRK06076   11 LILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFI 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  81 IALIMWAPLPM-PH-PLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSG 158
Cdd:PRK06076   91 PAFLAWAVIPFgPElVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAG 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 159 SFTLSTLATTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALT 238
Cdd:PRK06076  171 SLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALI 250

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1197710330 239 TMLFLGTLYKPNMPETYTTNFTTKA---LLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMW 303
Cdd:PRK06076  251 TTLFLGGWLPPFPLGGGIPGAIWFVlkvAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 2-311 8.91e-90

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 270.50  E-value: 8.91e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   2 FFTNLLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALFI 81
Cdd:MTH00010    5 FFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  82 ALIMWAPLPMPHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFT 161
Cdd:MTH00010   85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 162 LSTLATTQeHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTML 241
Cdd:MTH00010  165 FSKIIMSQ-YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVF 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197710330 242 FLGTlykpnMPETYTTNFTTKALLLTTLFL--WIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILM 311
Cdd:MTH00010  244 FTSF-----IPSIFISDLMLILKTVFLAFLfiWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLL 310
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 6-316 1.96e-83

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 255.33  E-value: 1.96e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   6 LLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALFIALIM 85
Cdd:MTH00029   13 LLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILA 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  86 WAPLPMPHP--LINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLS 163
Cdd:MTH00029   93 WAIVTMDQGvfLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNIS 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 164 TLATTQEHLWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFL 243
Cdd:MTH00029  173 EIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFL 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 244 GTLYKP--NMPETYTTNFTTKALLLTTLFLWI--------------RASYPRFRYDQLMHLLWKNFLPLTLALCMWHISL 307
Cdd:MTH00029  253 GGWLSPldGIPTPPEAFSIFEQIASSKSSFWFftkssifilffiwsRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGI 332


                  ....*....
gi 1197710330 308 PILMSHIPP 316
Cdd:MTH00029  333 LIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 5-298 1.11e-61

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 197.81  E-value: 1.11e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   5 NLLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALFIALI 84
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  85 MWAPLPMPHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLSt 164
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFV- 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 165 latTQEHLWLIIpswpLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFLG 244
Cdd:MTH00090  160 ---SSFSLSLFV----IYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1197710330 245 TLYkpnmpetyttnftTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:MTH00090  233 FSF-------------LMLFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 1-298 8.00e-50

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 167.41  E-value: 8.00e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   1 MFFTNLLLLIIpIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALF 80
Cdd:MTH00058    3 GLVSGLEGLLI-ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  81 IALIMWAPLPMPHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSF 160
Cdd:MTH00058   82 LVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSY 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 161 TLSTLATTQEHLWLIIPswPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:MTH00058  162 SLVDFYYSGWLSVLLFP--LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSV 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1197710330 241 LFLGtlykpnmpetyTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:MTH00058  240 LFFG-----------GGFVSIMLLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
 3-298 2.31e-40

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 144.32  E-value: 2.31e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   3 FTNLLLLIIPIMMAMAFFTLIERKILGYMQLRKGPNTVGSHGLLQPFADAMKLFIKEPLRPLASSTLLYITAPVLALFIA 82
Cdd:CHL00032   30 LVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISI 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  83 LIMWAPLPMPHPLI--NLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSf 160
Cdd:CHL00032  110 LLSYLVIPFGYHLVlaDLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNS- 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 161 tLSTLATTQEHLWLIIPSWPL------TMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMM 234
Cdd:CHL00032  189 -LSTVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVS 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 235 NALTTMLFLG--TLYKP--NMPETYTTNFTTKALLLTTLFLW--------------IRASYPRFRYDQLMHLLWKNFLPL 296
Cdd:CHL00032  268 SLFVTVLYLGgwNLSIPyiFIPELFEINKTGGVFGTTIGIFItlaktylflfisitTRWTLPRLRMDQLLNLGWKFLLPI 347


                  ..
gi 1197710330 297 TL 298
Cdd:CHL00032  348 SL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
6-303 3.82e-25

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 102.57  E-value: 3.82e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330   6 LLLLIIPIMMAMaFFTLIERKILGYMQLRKGPntvgshGLLQPFADAMKLFIKEPLRPlASSTLLYITAPVLAL--FIAL 83
Cdd:COG0650     8 LLQLLLALLLAP-LLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVP-ETASWLFRAAPYVALaaMLLA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330  84 IMWAPLPMPHPLINLNSGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLS 163
Cdd:COG0650    80 ALLVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTSLS 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197710330 164 TLATTQEH---LWLIIPSWPLTMMWFTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:COG0650   160 DIVAYQAAhgpLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVN 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1197710330 241 LFLGtlykPNMPETYTTNFTTK---ALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMW 303
Cdd:COG0650   240 LFLP----WGIALTLLLALLLFllkLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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