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Conserved domains on  [gi|1197513288|ref|YP_009370759|]
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NADH dehydrogenase subunit 7 (mitochondrion) [Eukaryota sp. BB2]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06075 PRK06075
NADH-quinone oxidoreductase subunit D;
11-400 0e+00

NADH-quinone oxidoreductase subunit D;


:

Pssm-ID: 180385 [Multi-domain]  Cd Length: 392  Bit Score: 731.57  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  11 EKALKNFTLNFGPQHPAAHGVLRLVLELNGEIIERADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMAQEHAYSL 90
Cdd:PRK06075    1 EAEIRNYTLNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  91 AVEYLLKIDVPLRAKYIRVLFAELTRLLNHLLSVTTHAMDVGALTPMLWAFEEREKLMEFYEKVSGARLHASYIRPGGVT 170
Cdd:PRK06075   81 AVEKLLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVR 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 171 QDLPYGLLDEIFNFIIQFSSRLDEIEELLTCNRIWKQRLVHIGIISVQDALNWGFSGVMLRGSGLPWDLRKAFPYEVYDK 250
Cdd:PRK06075  161 RDLPDGLLEDIRDFLDYFPKRLDDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDE 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 251 LNFKVPTGVEGDCYDRYLVRMNEMRESINIIHQCLNAMPFTD--YKLDDKKITPPRRLQMKSSMEALIHHFKLYSEGFVV 328
Cdd:PRK06075  241 LDFDVPVGKNGDCYDRYLVRVEEMRQSLRIIEQCLDRLRPPPgpVMVDDPKIAPPARLEMKTSMEALIHHFKLVTEGFRV 320

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197513288 329 PKGEVYSAVEAPKGEFGVFLVANSTNKPYRCKIRAPGFAHLQGLDIMTRGHMLADLVTVIGTQDIVFGEIDR 400
Cdd:PRK06075  321 PAGEVYAAVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAHLQALDEMCRGHMLADVVAIIGSLDIVFGEVDR 392
 
Name Accession Description Interval E-value
PRK06075 PRK06075
NADH-quinone oxidoreductase subunit D;
11-400 0e+00

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 180385 [Multi-domain]  Cd Length: 392  Bit Score: 731.57  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  11 EKALKNFTLNFGPQHPAAHGVLRLVLELNGEIIERADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMAQEHAYSL 90
Cdd:PRK06075    1 EAEIRNYTLNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  91 AVEYLLKIDVPLRAKYIRVLFAELTRLLNHLLSVTTHAMDVGALTPMLWAFEEREKLMEFYEKVSGARLHASYIRPGGVT 170
Cdd:PRK06075   81 AVEKLLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVR 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 171 QDLPYGLLDEIFNFIIQFSSRLDEIEELLTCNRIWKQRLVHIGIISVQDALNWGFSGVMLRGSGLPWDLRKAFPYEVYDK 250
Cdd:PRK06075  161 RDLPDGLLEDIRDFLDYFPKRLDDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDE 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 251 LNFKVPTGVEGDCYDRYLVRMNEMRESINIIHQCLNAMPFTD--YKLDDKKITPPRRLQMKSSMEALIHHFKLYSEGFVV 328
Cdd:PRK06075  241 LDFDVPVGKNGDCYDRYLVRVEEMRQSLRIIEQCLDRLRPPPgpVMVDDPKIAPPARLEMKTSMEALIHHFKLVTEGFRV 320

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197513288 329 PKGEVYSAVEAPKGEFGVFLVANSTNKPYRCKIRAPGFAHLQGLDIMTRGHMLADLVTVIGTQDIVFGEIDR 400
Cdd:PRK06075  321 PAGEVYAAVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAHLQALDEMCRGHMLADVVAIIGSLDIVFGEVDR 392
NuoD COG0649
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
 15-400 0e+00

NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440414 [Multi-domain]  Cd Length: 390  Bit Score: 691.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  15 KNFTLNFGPQHPAAHGVLRLVLELNGEIIERADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMAQEHAYSLAVEY 94
Cdd:COG0649     5 EEMVLNMGPQHPSTHGVLRLVLELDGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLDYLSPMNNELAYVLAVEK 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  95 LLKIDVPLRAKYIRVLFAELTRLLNHLLSVTTHAMDVGALTPMLWAFEEREKLMEFYEKVSGARLHASYIRPGGVTQDLP 174
Cdd:COG0649    85 LLGIEVPERAQYIRVILAELNRIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVRRDLP 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 175 YGLLDEIFNFIIQFSSRLDEIEELLTCNRIWKQRLVHIGIISVQDALNWGFSGVMLRGSGLPWDLRKAFPYEVYDKLNFK 254
Cdd:COG0649   165 DGFLEKVREFLDYFPKRLDEYEDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGYDELDFD 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 255 VPTGVEGDCYDRYLVRMNEMRESINIIHQCLNAMPFTDYKLDDKKITPPRRLQMKSSMEALIHHFKLYSEGFVVPKGEVY 334
Cdd:COG0649   245 VPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPEGPVMAKDPKIAPPPKEEMKTSMEALIHHFKLVTEGFKVPAGEVY 324

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1197513288 335 SAVEAPKGEFGVFLVANSTNKPYRCKIRAPGFAHLQGLDIMTRGHMLADLVTVIGTQDIVFGEIDR 400
Cdd:COG0649   325 AAVESPRGELGFYLVSDGGTKPYRVKIRSPSFANLQALPEMLKGHMLADVVAILGSLDIVLGEVDR 390
NuoD TIGR01962
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
 15-400 0e+00

NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]


Pssm-ID: 273898  Cd Length: 386  Bit Score: 628.99  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  15 KNFTLNFGPQHPAAHGVLRLVLELNGEIIERADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMAQEHAYSLAVEY 94
Cdd:TIGR01962   1 EFMILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  95 LLKIDVPLRAKYIRVLFAELTRLLNHLLSVTTHAMDVGALTPMLWAFEEREKLMEFYEKVSGARLHASYIRPGGVTQDLP 174
Cdd:TIGR01962  81 LLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 175 YGLLDEIFNFIIQFSSRLDEIEELLTCNRIWKQRLVHIGIISVQDALNWGFSGVMLRGSGLPWDLRKAFPYEVYDKLNFK 254
Cdd:TIGR01962 161 ENWLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 255 VPTGVEGDCYDRYLVRMNEMRESINIIHQCLNAMPFTDYKLDDKKITPPRRLQMKSSMEALIHHFKLYSEGFVVPKGEVY 334
Cdd:TIGR01962 241 VPVGGNGDCYDRYLLRVLEMRESIKIIEQCLEKMPPGPIKADNPKLAPPPKERMLTSMEALIHHFKLVTEGFRVPAGEVY 320

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1197513288 335 SAVEAPKGEFGVFLVANSTNKPYRCKIRAPGFAHLQGLDIMTRGHMLADLVTVIGTQDIVFGEIDR 400
Cdd:TIGR01962 321 VPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAILGSIDPVMGEVDR 386
Complex1_49kDa pfam00346
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
131-400 2.00e-177

Respiratory-chain NADH dehydrogenase, 49 Kd subunit;


Pssm-ID: 459772  Cd Length: 270  Bit Score: 494.60  E-value: 2.00e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 131 VGALTPMLWAFEEREKLMEFYEKVSGARLHASYIRPGGVTQDLPYGLLDEIFNFIIQFSSRLDEIEELLTCNRIWKQRLV 210
Cdd:pfam00346   1 LGAMTPFLYAFREREKILDLFERITGARMTHSYFRPGGVARDLPEGFLEKIREFLDYFPKRLDEYEDLLTRNRIFKDRTK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 211 HIGIISVQDALNWGFSGVMLRGSGLPWDLRKAFPYEVYDKLNFKVPTGVEGDCYDRYLVRMNEMRESINIIHQCLNAMPF 290
Cdd:pfam00346  81 GVGVLSAEDALALGVTGPMLRASGVPWDLRKDEPYSGYDELDFDVPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 291 TDYKLDDKKITPPRRLQMKSSMEALIHHFKLYSEGFVVPKGEVYSAVEAPKGEFGVFLVANSTNKPYRCKIRAPGFAHLQ 370
Cdd:pfam00346 161 GPVMADDPKIALPPKEEMKTSMEALIHHFKLVTEGFRVPAGEVYVAVEAPKGELGFYLVSDGGTKPYRVKIRAPSFANLQ 240

                         250       260       270
                  ....*....|....*....|....*....|
gi 1197513288 371 GLDIMTRGHMLADLVTVIGTQDIVFGEIDR 400
Cdd:pfam00346 241 ALPEMCKGHMLADVVAIIGSIDIVMGEVDR 270
 
Name Accession Description Interval E-value
PRK06075 PRK06075
NADH-quinone oxidoreductase subunit D;
11-400 0e+00

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 180385 [Multi-domain]  Cd Length: 392  Bit Score: 731.57  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  11 EKALKNFTLNFGPQHPAAHGVLRLVLELNGEIIERADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMAQEHAYSL 90
Cdd:PRK06075    1 EAEIRNYTLNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  91 AVEYLLKIDVPLRAKYIRVLFAELTRLLNHLLSVTTHAMDVGALTPMLWAFEEREKLMEFYEKVSGARLHASYIRPGGVT 170
Cdd:PRK06075   81 AVEKLLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVR 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 171 QDLPYGLLDEIFNFIIQFSSRLDEIEELLTCNRIWKQRLVHIGIISVQDALNWGFSGVMLRGSGLPWDLRKAFPYEVYDK 250
Cdd:PRK06075  161 RDLPDGLLEDIRDFLDYFPKRLDDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDE 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 251 LNFKVPTGVEGDCYDRYLVRMNEMRESINIIHQCLNAMPFTD--YKLDDKKITPPRRLQMKSSMEALIHHFKLYSEGFVV 328
Cdd:PRK06075  241 LDFDVPVGKNGDCYDRYLVRVEEMRQSLRIIEQCLDRLRPPPgpVMVDDPKIAPPARLEMKTSMEALIHHFKLVTEGFRV 320

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197513288 329 PKGEVYSAVEAPKGEFGVFLVANSTNKPYRCKIRAPGFAHLQGLDIMTRGHMLADLVTVIGTQDIVFGEIDR 400
Cdd:PRK06075  321 PAGEVYAAVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAHLQALDEMCRGHMLADVVAIIGSLDIVFGEVDR 392
NuoD COG0649
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
 15-400 0e+00

NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440414 [Multi-domain]  Cd Length: 390  Bit Score: 691.81  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  15 KNFTLNFGPQHPAAHGVLRLVLELNGEIIERADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMAQEHAYSLAVEY 94
Cdd:COG0649     5 EEMVLNMGPQHPSTHGVLRLVLELDGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLDYLSPMNNELAYVLAVEK 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  95 LLKIDVPLRAKYIRVLFAELTRLLNHLLSVTTHAMDVGALTPMLWAFEEREKLMEFYEKVSGARLHASYIRPGGVTQDLP 174
Cdd:COG0649    85 LLGIEVPERAQYIRVILAELNRIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVRRDLP 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 175 YGLLDEIFNFIIQFSSRLDEIEELLTCNRIWKQRLVHIGIISVQDALNWGFSGVMLRGSGLPWDLRKAFPYEVYDKLNFK 254
Cdd:COG0649   165 DGFLEKVREFLDYFPKRLDEYEDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGYDELDFD 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 255 VPTGVEGDCYDRYLVRMNEMRESINIIHQCLNAMPFTDYKLDDKKITPPRRLQMKSSMEALIHHFKLYSEGFVVPKGEVY 334
Cdd:COG0649   245 VPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPEGPVMAKDPKIAPPPKEEMKTSMEALIHHFKLVTEGFKVPAGEVY 324

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1197513288 335 SAVEAPKGEFGVFLVANSTNKPYRCKIRAPGFAHLQGLDIMTRGHMLADLVTVIGTQDIVFGEIDR 400
Cdd:COG0649   325 AAVESPRGELGFYLVSDGGTKPYRVKIRSPSFANLQALPEMLKGHMLADVVAILGSLDIVLGEVDR 390
NuoD TIGR01962
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
 15-400 0e+00

NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]


Pssm-ID: 273898  Cd Length: 386  Bit Score: 628.99  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  15 KNFTLNFGPQHPAAHGVLRLVLELNGEIIERADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMAQEHAYSLAVEY 94
Cdd:TIGR01962   1 EFMILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  95 LLKIDVPLRAKYIRVLFAELTRLLNHLLSVTTHAMDVGALTPMLWAFEEREKLMEFYEKVSGARLHASYIRPGGVTQDLP 174
Cdd:TIGR01962  81 LLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 175 YGLLDEIFNFIIQFSSRLDEIEELLTCNRIWKQRLVHIGIISVQDALNWGFSGVMLRGSGLPWDLRKAFPYEVYDKLNFK 254
Cdd:TIGR01962 161 ENWLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 255 VPTGVEGDCYDRYLVRMNEMRESINIIHQCLNAMPFTDYKLDDKKITPPRRLQMKSSMEALIHHFKLYSEGFVVPKGEVY 334
Cdd:TIGR01962 241 VPVGGNGDCYDRYLLRVLEMRESIKIIEQCLEKMPPGPIKADNPKLAPPPKERMLTSMEALIHHFKLVTEGFRVPAGEVY 320

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1197513288 335 SAVEAPKGEFGVFLVANSTNKPYRCKIRAPGFAHLQGLDIMTRGHMLADLVTVIGTQDIVFGEIDR 400
Cdd:TIGR01962 321 VPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAILGSIDPVMGEVDR 386
Complex1_49kDa pfam00346
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
131-400 2.00e-177

Respiratory-chain NADH dehydrogenase, 49 Kd subunit;


Pssm-ID: 459772  Cd Length: 270  Bit Score: 494.60  E-value: 2.00e-177
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 131 VGALTPMLWAFEEREKLMEFYEKVSGARLHASYIRPGGVTQDLPYGLLDEIFNFIIQFSSRLDEIEELLTCNRIWKQRLV 210
Cdd:pfam00346   1 LGAMTPFLYAFREREKILDLFERITGARMTHSYFRPGGVARDLPEGFLEKIREFLDYFPKRLDEYEDLLTRNRIFKDRTK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 211 HIGIISVQDALNWGFSGVMLRGSGLPWDLRKAFPYEVYDKLNFKVPTGVEGDCYDRYLVRMNEMRESINIIHQCLNAMPF 290
Cdd:pfam00346  81 GVGVLSAEDALALGVTGPMLRASGVPWDLRKDEPYSGYDELDFDVPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 291 TDYKLDDKKITPPRRLQMKSSMEALIHHFKLYSEGFVVPKGEVYSAVEAPKGEFGVFLVANSTNKPYRCKIRAPGFAHLQ 370
Cdd:pfam00346 161 GPVMADDPKIALPPKEEMKTSMEALIHHFKLVTEGFRVPAGEVYVAVEAPKGELGFYLVSDGGTKPYRVKIRAPSFANLQ 240

                         250       260       270
                  ....*....|....*....|....*....|
gi 1197513288 371 GLDIMTRGHMLADLVTVIGTQDIVFGEIDR 400
Cdd:pfam00346 241 ALPEMCKGHMLADVVAIIGSIDIVMGEVDR 270
PRK12322 PRK12322
NADH-quinone oxidoreductase subunit D;
17-400 1.27e-143

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 183437 [Multi-domain]  Cd Length: 366  Bit Score: 412.95  E-value: 1.27e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  17 FTLNFGPQHPAAHGVLRLVLELNGEIIERADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMAQEHAYSLAVEYLL 96
Cdd:PRK12322    7 MLLNVGPQHPSTHGVFRLVLKIDGEIIVEATPVIGYLHRGTEKLAESLQYTQIIPYTDRMDYLSAMTNNYVYCHAVETMM 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  97 KIDVPLRAKYIRVLFAELTRLLNHLLSVTTHAMDVGALTPMLWAFEEREKLMEFYEKVSGARLHASYIRPGGVTQDLPYG 176
Cdd:PRK12322   87 GLEVPERAEYLRVIAMELGRIASHLVWWGTYLLDIGAVSPFLYAFREREMIINLLNELCGARLTFNYMRIGGVKWDAPDG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 177 LLDEIFNFIIQFSSRLDEIEELLTCNRIWKQRLVHIGIISVQDALNWGFSGVMLRGSGLPWDLRKAFPYEVYDKLNFKVP 256
Cdd:PRK12322  167 WIEKVKEFVPYMREQLAGYHDLVTGNEIFLNRVKGVGIYSAEEAISYSLSGVNLRCTGVNWDLRKDEPYSIYDRFDFDIP 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 257 TGVEGDCYDRYLVRMNEMRESINIIHQCLNAMPftdyklDDKKITP--PRRLQmkssmealihhfklysegfvVPKGEVY 334
Cdd:PRK12322  247 VGSVGDCWDRYVCRMQEIEQSLKIIEQAVEQFP------KEGPVLAkvPKIIK--------------------APKGEAY 300

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1197513288 335 SAVEAPKGEFGVFLVANSTNKPYRCKIRAPGFAHLQGLDIMTRGHMLADLVTVIGTQDIVFGEIDR 400
Cdd:PRK12322  301 VRIESPRGEIGCYIASDGKKKPYRLKFRRPSFYNLQILPKLLKGENIANLIAILGSIDIVLGEVDG 366
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
19-400 2.06e-143

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 426.88  E-value: 2.06e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  19 LNFGPQHPAAHGVLRLVLELNGEIIERADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMAQEHAYSLAVEYLLKI 98
Cdd:PRK13292  407 LNLGPQHPGTHGIIRFVLKLDGEEIVDMDSDIGYHHRGAEKIGERQHWNQFIPYTDRIDYLAGVQNNLAYVNSVETLCGI 486

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  99 DVPLRAKYIRVLFAELTRLLNHLLSVTTHAMDVGALTPMLWAFEEREKLMEFYEKVSGARLHASYIRPGGVTQDLPYGLL 178
Cdd:PRK13292  487 EVPDRAIYIRVMLSELFRIANHLVWLGTFAADVGAMTPVFYTFTDREKIFDIVEMITGGRMHPAWFRIGGVAEDLPEGWK 566

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 179 DEIFNFIIQFSSRLDEIEELLTCNRIWKQRLVHIGIISVQDALNWGFSGVMLRGSGLPWDLRKAFPYEVYDKLNFKVPTG 258
Cdd:PRK13292  567 EAVEAFLRWFPGRLKEYEDLLTGNPIFKARLKGVGVITRDEAVEWGISGPNLRACGLAWDLRKKMPYGGYDRFDFEVPTA 646

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 259 VEGDCYDRYLVRMNEMRESINIIHQCLNAMPFTDYKLDDKKITPPRRLQMKSSMEALIHHFKLYSEGFVVPKGEVYSAVE 338
Cdd:PRK13292  647 EGGDCYARYLVRMEEMRQSLRIVRQAAAGMPGGRWISDDYRYVLPQKRDTLKDIESLIHHFVNVTRGPAPPKGECYAAIE 726

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197513288 339 APKGEFGVFLVANSTNKPYRCKIRAPGFAHLQGLDIMTRGHMLADLVTVIGTQDIVFGEIDR 400
Cdd:PRK13292  727 APKGENGYFVVSDGLNIAYRMRIRTPSFPHIQALPLLSRGWLVADFLAIIGSIDFVLADLDR 788
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
 19-400 1.25e-132

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 392.36  E-value: 1.25e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  19 LNFGPQHPAAHGVLRLVLELNGEIIERADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMAQEHAYSLAVEYLLKI 98
Cdd:PRK11742  194 LNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIDYLGGCMNEMPYVLAVEKLAGI 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  99 DVPLRAKYIRVLFAELTRLLNHLLSVTTHAMDVGALTPMLWAFEEREKLMEFYEKVSGARLHASYIRPGGVTQDLPYGLL 178
Cdd:PRK11742  274 TVPDRVNVIRVMLSELFRINSHLLYIGTFIQDVGAMTPVFFAFTDRQKIYDVIEAITGFRMHPAWFRIGGVAHDLPRGWD 353

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 179 DEIFNFIIQFSSRLDEIEELLTCNRIWKQRLVHIGIISVQDALNWGFSGVMLRGSGLPWDLRKAFPYEVYDKLNFKVPTG 258
Cdd:PRK11742  354 RLLREFLDWMPKRLDEYEKAALRNSILKGRTQGVAAYNAKEALEWGVTGAGLRATGIDFDVRKARPYSGYENFDFEVPVG 433

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 259 VEGDCYDRYLVRMNEMRESINIIHQCLNAMPFTDYKLDDKKITPPRRLQMKSSMEALIHHFKLYSEGFVVPKGEVYSAVE 338
Cdd:PRK11742  434 GNGDCYDRVMVKVEEMRQSLRIIEQCLDNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIE 513

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197513288 339 APKGEFGVFLVANSTNKPYRCKIRAPGFAHLQGLDIMTRGHMLADLVTVIGTQDIVFGEIDR 400
Cdd:PRK11742  514 ATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 575
PRK07415 PRK07415
NAD(P)H-quinone oxidoreductase subunit H; Validated
 19-400 4.25e-122

NAD(P)H-quinone oxidoreductase subunit H; Validated


Pssm-ID: 180969 [Multi-domain]  Cd Length: 394  Bit Score: 359.05  E-value: 4.25e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  19 LNFGPQHPAAHGVLRLVLELNGEIIERADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMAQEHAYSLAVEYLLKI 98
Cdd:PRK07415   13 LNFGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDYAAGMFNEAITVNAPEKLANI 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  99 DVPLRAKYIRVLFAELTRLLNHLLSVTTHAMDVGALTPMLWAFEEREKLMEFYEKVSGARL-HASYIRPGGVTQDLPYGL 177
Cdd:PRK07415   93 PVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTPFFYIFREREMIYDLWEAATGQRLiNNNYFRIGGVAADLPYGW 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 178 LDEIFNFIIQFSSRLDEIEELLTCNRIWKQRLVHIGIISVQDALNWGFSGVMLRGSGLPWDLRKAFPYEVYDKLNFKVPT 257
Cdd:PRK07415  173 LEKCLDFCDYFGPKIDEYEKLITNNPIFRRRIEGLGTISREEAINWGLSGPMLRASGVKWDLRKVDHYECYDDFDWDVAW 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 258 GVEGDCYDRYLVRMNEMRESINIIHQCLNAMPFTDYK-LDDKKITPPRrlqmKSSMEALIHHF--KLYSEGFVVPKGEVY 334
Cdd:PRK07415  253 ETEGDCLARYRVRIEEMRESVKIIRQACKGIPGGPYEnLEAKRMAEGK----KSEWNGFDYQYvaKKVAPTFKIPNGELY 328

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1197513288 335 SAVEAPKGEFGVFLVANSTNKPYRCKIRAPGFAHLQGLDIMTRGHMLADLVTVIGTQDIVFGEIDR 400
Cdd:PRK07415  329 VRLESGKGELGIFIQGNNDVTPWRWKIRAADFNNLQILPHLLKGAKVADIMAILGSIDVIMGSVDR 394
ndhH CHL00017
NADH dehydrogenase subunit 7
 18-400 5.34e-116

NADH dehydrogenase subunit 7


Pssm-ID: 176960  Cd Length: 393  Bit Score: 343.60  E-value: 5.34e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  18 TLNFGPQHPAAHGVLRLVLELNGEIIERADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMAQEHAYSLAVEYLLK 97
Cdd:CHL00017   12 IVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEQLGN 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  98 IDVPLRAKYIRVLFAELTRLLNHLLSVTTHAMDVGALTPMLWAFEEREKLMEFYEKVSGARLHASYIRPGGVTQDLPYGL 177
Cdd:CHL00017   92 IQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGW 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 178 LDEIFNFIIQFSSRLDEIEELLTCNRIWKQRLVHIGIISVQDALNWGFSGVMLRGSGLPWDLRKAFPYEVYDKLNFKVPT 257
Cdd:CHL00017  172 IDKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEFDWEVQW 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 258 GVEGDCYDRYLVRMNEMRESINIIHQCLNAMPFTDYK-LDdkkitpPRRLQMKSSME--ALIHHF--KLYSEGFVVPKGE 332
Cdd:CHL00017  252 QKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYEnLE------ARRFDREKDSEwnDFEYRFisKKPSPTFELSKQE 325

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1197513288 333 VYSAVEAPKGEFGVFLVANSTNKPYRCKIRAPGFAHLQGLDIMTRGHMLADLVTVIGTQDIVFGEIDR 400
Cdd:CHL00017  326 LYVRVEAPKGELGIFLIGDDSVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
HycE2 COG3261
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
17-388 2.90e-94

Ni,Fe-hydrogenase III large subunit [Energy production and conversion];


Pssm-ID: 442492 [Multi-domain]  Cd Length: 479  Bit Score: 290.72  E-value: 2.90e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  17 FTLNFGPQHPAAHGVLRLVLELNGEIIERADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMAQEHAYSLAVEYLL 96
Cdd:COG3261   123 HEIPVGPVHAGLIEPGHFRFSVEGERILDLEIRLGYVHRGIEKLAEGRDYEQALYLAERICGICSVAHALAYCQAVEKAA 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288  97 KIDVPLRAKYIRVLFAELTRLLNHLLSVTTHAMDVGALTPMLWAFEEREKLMEFYEKVSGARLHASYIRPGGVTQDLPYG 176
Cdd:COG3261   203 GIEVPPRAQYLRVILLELERIHSHLLDLGALANDVGFETLFMQCWRLRERVLDLNEALTGNRVLRGINVPGGVRRDLDPE 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 177 LLDEIFNFIIQFSSRLDEIEELLTCNRIWKQRLVHIGIISVQDALNWGFSGVMLRGSGLPWDLRKAFPYEVYDKLNFKVP 256
Cdd:COG3261   283 QLKAILERLDELEEEVKELVDLFLNDPSVLDRLVGTGVLSKEDARDLGAVGPVARASGVDRDVRRDHPYAAYDELDFKVV 362

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197513288 257 TGVEGDCYDRYLVRMNEMRESINIIHQCLNAMPftdyklDDKKITPPRRLQmkssmealihhfklysegfvvPKGEVYSA 336
Cdd:COG3261   363 TETEGDVYARALVRLEEIFESLDLIRQALEKLP------EGPIRVPVPGLP---------------------PDGEGLGR 415

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1197513288 337 VEAPKGEFGVFLVANSTNKPYRCKIRAPGFAHLQGLDIMTRGHMLADlVTVI 388
Cdd:COG3261   416 VEAPRGELVHYVRTDGDGRLERVKIRTPSFANWPALELALRGNIVAD-FPLI 466
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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