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Conserved domains on  [gi|1197511598|ref|YP_009368297|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Lepilemur hollandorum]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 2-347 1.24e-156

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 442.75  E-value: 1.24e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598   2 NPTILSLIAITIFTGTMLTMIGSHWLLMWIGLEINTLGIIPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHS 81
Cdd:MTH00105    2 NPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  82 GQWNIIDSHNQLTSLTATIALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHLWVNLNTLLPIAISS 161
Cdd:MTH00105   82 GQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 162 VLVGGWGGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMFTTLNLNTSTTTLTLSSLWNKTPMIT 241
Cdd:MTH00105  162 ILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMT 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 242 LTIMIILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLIYNTSLTLFPTFNNTKMKWQLQITK 321
Cdd:MTH00105  242 SLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTK 321

                         330       340
                  ....*....|....*....|....*.
gi 1197511598 322 QTQLMSPLIILSTLSLPLSPTFSIMH 347
Cdd:MTH00105  322 PMTLLPTLIILSTMLLPLTPMLSILE 347
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 2-347 1.24e-156

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 442.75  E-value: 1.24e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598   2 NPTILSLIAITIFTGTMLTMIGSHWLLMWIGLEINTLGIIPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHS 81
Cdd:MTH00105    2 NPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  82 GQWNIIDSHNQLTSLTATIALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHLWVNLNTLLPIAISS 161
Cdd:MTH00105   82 GQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 162 VLVGGWGGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMFTTLNLNTSTTTLTLSSLWNKTPMIT 241
Cdd:MTH00105  162 ILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMT 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 242 LTIMIILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLIYNTSLTLFPTFNNTKMKWQLQITK 321
Cdd:MTH00105  242 SLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTK 321

                         330       340
                  ....*....|....*....|....*.
gi 1197511598 322 QTQLMSPLIILSTLSLPLSPTFSIMH 347
Cdd:MTH00105  322 PMTLLPTLIILSTMLLPLTPMLSILE 347
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-297 1.21e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 92.32  E-value: 1.21e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598   4 TILSLIAITiftGTMLTMIGSHWLLMWIGLEINTLGI-IPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHSG 82
Cdd:TIGR01770 105 YILLLFALL---GIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  83 QWNIIDSHNQLTSLTATI------------ALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHLW-- 148
Cdd:TIGR01770 182 SLNFEDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYil 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 149 -----VNLNTLLPIAISSVLVGGWGGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMfTTLNLNT 223
Cdd:TIGR01770 262 fgfseAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALM-SLGAFGV 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 224 STTTLTLSSLWNKT-----------PMITLTIMIILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYF 292
Cdd:TIGR01770 341 LSLLRSYKDEWIEYisdfaglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFY 420


                  ....*
gi 1197511598 293 YMRLI 297
Cdd:TIGR01770 421 YLRVV 425
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 18-298 1.91e-19

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 89.02  E-value: 1.91e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  18 MLTMIGS-HWLLMWIGLEINTLGI-IPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHSGQWNIID-----SH 90
Cdd:COG1007   115 MMLMASAnDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGiaaalAA 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  91 NQLTSLTATIALTM-------KLGMAPFHFWVPEVTQG--------------ISLMTGMLLLTWQKLAPISIMLQIHLWV 149
Cdd:COG1007   195 GGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGaptpvtaflatapkIAAFAALLRLLVEAFPGLAADWQLLLAV 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 150 nlntllpIAISSVLVGGWGGLNQTQLRKILAYSSITHMGWMMAILTfcpSLTVLN-------LLIYLTLTIVMFTTLNLN 222
Cdd:COG1007   275 -------LAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLA---AGTPLGvsaalfyLLAYLFMNLGAFAVILLL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 223 TSTTTLTLSS-----LWNKTPMITLTIMIILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLI 297
Cdd:COG1007   345 SRKGGEAEEIedlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424


                  .
gi 1197511598 298 Y 298
Cdd:COG1007   425 K 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 25-268 3.85e-17

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 80.44  E-value: 3.85e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  25 HWLLMWIGLEINTLGIIP-ILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHSGQWNIIDSHNQLTSLTATIALT 103
Cdd:pfam00361   3 DLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSGLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 104 M-----------KLGMAPFHFWVPEVTQGISLMTGMLLL-TWQKLAPISIM-----LQIHLWVNLNTLLPIAISSVLVGG 166
Cdd:pfam00361  83 LlfllilvgflfKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLLGS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 167 WGGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMFTTLNLNTSTTT---------LTLSSLWNKT 237
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIyrrvhtrniRDYGGLAKTM 242

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1197511598 238 PMITLTIMIILLSLGGLPPLTGFLPKWAIIQ 268
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 2-347 1.24e-156

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 442.75  E-value: 1.24e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598   2 NPTILSLIAITIFTGTMLTMIGSHWLLMWIGLEINTLGIIPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHS 81
Cdd:MTH00105    2 NPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  82 GQWNIIDSHNQLTSLTATIALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHLWVNLNTLLPIAISS 161
Cdd:MTH00105   82 GQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 162 VLVGGWGGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMFTTLNLNTSTTTLTLSSLWNKTPMIT 241
Cdd:MTH00105  162 ILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMT 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 242 LTIMIILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLIYNTSLTLFPTFNNTKMKWQLQITK 321
Cdd:MTH00105  242 SLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTK 321

                         330       340
                  ....*....|....*....|....*.
gi 1197511598 322 QTQLMSPLIILSTLSLPLSPTFSIMH 347
Cdd:MTH00105  322 PMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 2-342 2.82e-112

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 330.23  E-value: 2.82e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598   2 NPTILSLIAITIFTGTMLTMIGSHWLLMWIGLEINTLGIIPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHS 81
Cdd:MTH00135    2 NPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  82 GQWNIIDSHNQLTSLTATIALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHLwVNLNTLLPIAISS 161
Cdd:MTH00135   82 GQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP-TNPTLLITLGLTS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 162 VLVGGWGGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMFTTLNLNTSTTTLTLSSLWNKTPMIT 241
Cdd:MTH00135  161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 242 LTIMIILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLIYNTSLTLFPTFNNTKMKWQLQITK 321
Cdd:MTH00135  241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320

                         330       340
                  ....*....|....*....|.
gi 1197511598 322 QTQLMSPLIILSTLSLPLSPT 342
Cdd:MTH00135  321 LTLPLAISTTATLMLLPLTPA 341
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 2-342 5.14e-111

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 326.88  E-value: 5.14e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598   2 NPTILSLIAITIFTGTMLTMIGSHWLLMWIGLEINTLGIIPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHS 81
Cdd:MTH00070    2 SPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  82 GQWNIIDSHNQLTSLTATIALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHLWVNLNTLLPIAISS 161
Cdd:MTH00070   82 GEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 162 VLVGGWGGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMFTTLNLNTSTTTLTLSSLWNKTPMIT 241
Cdd:MTH00070  162 TLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLT 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 242 LTIMIILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLIYNTSLTLFPTFNNTKMKWQLQiTK 321
Cdd:MTH00070  242 SMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK-NK 320

                         330       340
                  ....*....|....*....|.
gi 1197511598 322 QTQLMSPLIILSTLSLPLSPT 342
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPT 341
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 2-346 1.12e-110

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 326.01  E-value: 1.12e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598   2 NPTILSLIAITIFTGTMLTMIGSHWLLMWIGLEINTLGIIPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHS 81
Cdd:MTH00112    2 NPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  82 GQWNIIDSHNQLTSLTATIALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHLWVNLNTLLPIAISS 161
Cdd:MTH00112   82 GQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 162 VLVGGWGGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMFTTLNLNTSTTTLTLSSLWNKTPMIT 241
Cdd:MTH00112  162 TLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLN 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 242 LTIMIILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLIYNTSLTLFPTFNNTKMKWQLQiTK 321
Cdd:MTH00112  242 TTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTK-PK 320

                         330       340
                  ....*....|....*....|....*
gi 1197511598 322 QTQLMSPLIILSTLSLPLSPTFSIM 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTI 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 2-344 1.51e-79

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 246.80  E-value: 1.51e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598   2 NPTILSLIAITIFTGTMLTMIGSHWLLMWIGLEINTLGIIPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHS 81
Cdd:MTH00200    2 SPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  82 GQWNIIDSHNQLTSLTATIALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHLWVNLNTLLPIAISS 161
Cdd:MTH00200   82 GQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 162 VLVGGWGGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMFTTLNLNTSTTTLTLSSLWNKTPMIT 241
Cdd:MTH00200  162 VLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILS 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 242 LTIMIILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLIYNTSLTLFPTFNNTKMKWQLQITK 321
Cdd:MTH00200  242 MLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNS 321

                         330       340
                  ....*....|....*....|...
gi 1197511598 322 QTQLMSpLIILSTLSLPLSPTFS 344
Cdd:MTH00200  322 NLLVGL-LLLLSILGLPLTPQLL 343
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 2-339 3.66e-74

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 232.90  E-value: 3.66e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598   2 NPTILSLIAITIFTGTMLTMIGSHWLLMWIGLEINTLGIIPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHS 81
Cdd:MTH00041    2 NRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  82 GQWNIIDSHNQLTSLTATIALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHLWVNLNTLLPIAISS 161
Cdd:MTH00041   82 GSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 162 VLVGGWGGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMFTTLNLNTSTTTLTLSSLWNKTPMIT 241
Cdd:MTH00041  162 VLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISA 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 242 LTIMIILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLIYNTSLTLFPT-----FNNTKMKWQ 316
Cdd:MTH00041  242 FLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQhsislFSWRNSGNI 321

                         330       340
                  ....*....|....*....|...
gi 1197511598 317 LQITKQTQLMSPLIILSTLSLPL 339
Cdd:MTH00041  322 TVYGVILSILSSISILGLLLIPL 344
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 8-346 1.59e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 171.16  E-value: 1.59e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598   8 LIAITIFTGTMLTMIGSHWLLMWIGLEINTLGIIPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAvhsgqwNII 87
Cdd:MTH00160    9 LFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM------LNL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  88 DSHNQLTSLTATIALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIhlwVNLNTLLPIAISSVLVGGW 167
Cdd:MTH00160   83 MLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIGAI 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 168 GGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMFTTLNLNTSTTTLTLSSLWNKTPMITLTIMII 247
Cdd:MTH00160  160 GGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLN 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 248 LLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLIYNTSLtlfptFNNTKMKWQLQITKQTQLMS 327
Cdd:MTH00160  240 LLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLM-----LNYNKNKWNLKKKKNKFSLI 314

                         330       340
                  ....*....|....*....|.
gi 1197511598 328 P--LIILSTLSLPLSPTFSIM 346
Cdd:MTH00160  315 LnfLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 13-315 2.43e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 160.05  E-value: 2.43e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  13 IFTGTMLTMIGSHWLLMWIGLEINTLGIIPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHSGQWNIidshnq 92
Cdd:MTH00144   13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS------ 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  93 ltSLTATIALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIH-LWVNLNTLLPIAISSVLVGGWGGLN 171
Cdd:MTH00144   87 --MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdLYWLAYLLCVISVLSALVGSIGGLN 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 172 QTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMFTTLNLNTSTTTLTLSSLwNKTPMITLTIMIILLSL 251
Cdd:MTH00144  165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSIISLLLSL 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1197511598 252 GGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLIYNTSLTLFPTFNNTKMKW 315
Cdd:MTH00144  244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 6-312 3.84e-42

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 149.16  E-value: 3.84e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598   6 LSLIAITIFTGTMLTMIGSHWLLMWIGLEINTLGIIPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHSGQWN 85
Cdd:MTH00011    8 MFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLK 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  86 IIdshnqlTSLTATIALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHLWVNLNTLLPIAISSVLVG 165
Cdd:MTH00011   88 NI------TALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 166 GWGGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMFTTLNLNTSTTTLTLSSLWNKTPMITLTIM 245
Cdd:MTH00011  162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLF 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1197511598 246 IILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLIYNtSLTLFPTFNNTK 312
Cdd:MTH00011  242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN-FMYLSPTFSSLK 307
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 11-343 6.79e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 129.79  E-value: 6.79e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  11 ITIFTGTMLTMIGSHWLLMWIGLEINTLGIIPILMKNHKPRSTEAATKYFLVQTTASMLLMFtiafnAVHSGQWNIIDSh 90
Cdd:MTH00197    5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLM-----GGSLSFSNLYLS- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  91 nQLTSLTATIALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHlwVNLNTLLPIAISSVLVGGWGGL 170
Cdd:MTH00197   79 -LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNS--SSFMGLLICSVLSSLIGGIGGM 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 171 NQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMFTTLNLNTSTTTLTLSSLWNKTPMITLTIMIILLS 250
Cdd:MTH00197  156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 251 LGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLIYNTSLtlfptfNNTKMKWQLQITKQTQLMSPLI 330
Cdd:MTH00197  236 LGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI------LSNWMINFLMKINLLYSGLFIL 309

                         330
                  ....*....|...
gi 1197511598 331 ILSTLSLPLSPTF 343
Cdd:MTH00197  310 LMMMLPLLMIFTM 322
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-343 5.66e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 96.24  E-value: 5.66e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598   8 LIAITIFtGTMLTMIGSHWLLMWIGLEINTLGI-IPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHSGQWNI 86
Cdd:MTH00199  102 LILIVAL-GSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  87 IDSHNQLTS----LTATIALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHLWVNLntLLPIAISSV 162
Cdd:MTH00199  181 QGINSILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNV--VLICAVLSI 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 163 LVGGWGGLNQTQLRKILAYSSITHMG---WMMAILTFCP-SLTVLNLLIYLTLTIVMFTTLNLNTSTTTLT--LSSLWNK 236
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSIILSLKLTKGLIveVSGLSRK 338

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 237 TPMITLTIMIILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLIyntSLTLFPTfNNTKMKWQ 316
Cdd:MTH00199  339 NPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVV---QIIYFQA-DYSILIWQ 414

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1197511598 317 LQITKQTQL-MSPLIILS-----TLSLPLSPTF 343
Cdd:MTH00199  415 KVLKKEERLdLSKSILIGvtffiILFLMISPNF 447
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-297 3.26e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 93.17  E-value: 3.26e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  16 GTMLTMIGSHWLLMWIGLEINTLGI-IPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIA-------------FNAVHS 81
Cdd:MTH00196    5 GILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCAllcgttgglhlsyINLVLN 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  82 GQWNIIDSHNQLTSLTATIALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHLwvNLNTLLPIAISS 161
Cdd:MTH00196   85 SGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGGLFS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 162 VLVGGWGGLNQTQLRKILAYSSITHMG---WMMAILTFC---PSLTVLNLLIYLTLTIVMFTTLNLNTSTTTLTLSSLWN 235
Cdd:MTH00196  163 LFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFEsiqASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSGLSR 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197511598 236 KTPMITLTIMIILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLI 297
Cdd:MTH00196  243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-297 1.21e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 92.32  E-value: 1.21e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598   4 TILSLIAITiftGTMLTMIGSHWLLMWIGLEINTLGI-IPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHSG 82
Cdd:TIGR01770 105 YILLLFALL---GIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  83 QWNIIDSHNQLTSLTATI------------ALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHLW-- 148
Cdd:TIGR01770 182 SLNFEDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYil 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 149 -----VNLNTLLPIAISSVLVGGWGGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMfTTLNLNT 223
Cdd:TIGR01770 262 fgfseAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALM-SLGAFGV 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 224 STTTLTLSSLWNKT-----------PMITLTIMIILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYF 292
Cdd:TIGR01770 341 LSLLRSYKDEWIEYisdfaglfktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFY 420


                  ....*
gi 1197511598 293 YMRLI 297
Cdd:TIGR01770 421 YLRVV 425
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 18-298 1.91e-19

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 89.02  E-value: 1.91e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  18 MLTMIGS-HWLLMWIGLEINTLGI-IPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHSGQWNIID-----SH 90
Cdd:COG1007   115 MMLMASAnDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGiaaalAA 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  91 NQLTSLTATIALTM-------KLGMAPFHFWVPEVTQG--------------ISLMTGMLLLTWQKLAPISIMLQIHLWV 149
Cdd:COG1007   195 GGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGaptpvtaflatapkIAAFAALLRLLVEAFPGLAADWQLLLAV 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 150 nlntllpIAISSVLVGGWGGLNQTQLRKILAYSSITHMGWMMAILTfcpSLTVLN-------LLIYLTLTIVMFTTLNLN 222
Cdd:COG1007   275 -------LAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLA---AGTPLGvsaalfyLLAYLFMNLGAFAVILLL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 223 TSTTTLTLSS-----LWNKTPMITLTIMIILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLI 297
Cdd:COG1007   345 SRKGGEAEEIedlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424


                  .
gi 1197511598 298 Y 298
Cdd:COG1007   425 K 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
5-215 3.24e-18

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 85.26  E-value: 3.24e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598   5 ILSLIAitifTGTMLTMIGS-HWLLMWIGLEINTLGI-IPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHSG 82
Cdd:PRK05777  107 LLVLFA----LLGMMVMVSAnDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATG 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  83 QWNIIDSHNQLTSLTAT------------IALTMKLGMAPFHFWVPEVTQG--------------ISLMTGMLLLTWQKL 136
Cdd:PRK05777  183 SLSFAGIAKALADGSGNsllllfglvfllVGLAFKLSAVPFHMWTPDVYEGaptpvtaflatapkIAAFAVLLRLLVVAF 262

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1197511598 137 APISIMLQIHLWVnlntllpIAISSVLVGGWGGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVM 215
Cdd:PRK05777  263 GGLSEDWQQVLAI-------IAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFM 334
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 25-268 3.85e-17

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 80.44  E-value: 3.85e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  25 HWLLMWIGLEINTLGIIP-ILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHSGQWNIIDSHNQLTSLTATIALT 103
Cdd:pfam00361   3 DLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSGLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 104 M-----------KLGMAPFHFWVPEVTQGISLMTGMLLL-TWQKLAPISIM-----LQIHLWVNLNTLLPIAISSVLVGG 166
Cdd:pfam00361  83 LlfllilvgflfKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLLGS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 167 WGGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMFTTLNLNTSTTT---------LTLSSLWNKT 237
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIyrrvhtrniRDYGGLAKTM 242

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1197511598 238 PMITLTIMIILLSLGGLPPLTGFLPKWAIIQ 268
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-191 5.67e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 69.89  E-value: 5.67e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  16 GTMLTMIGSHWLLMWIGLEINTLGIIPILMKNHKPRST---------EAATKYFLVQTTASMLLMFTIAFNAVHSGQ--- 83
Cdd:MTH00198  200 GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNegm 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  84 -----------WNIIDSHNQLTSLTATIALTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLapISIMLQIHLWVNLN 152
Cdd:MTH00198  280 lgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSK 357

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1197511598 153 TLLPIAISSVLVGGWGGLNQTQLRKILAYSSITHMGWMM 191
Cdd:MTH00198  358 LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 15-301 4.09e-12

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 66.71  E-value: 4.09e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  15 TGTMLTMIGSHWLLMWIGLEINTLGIIPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHSGQWNIIDSHNQLT 94
Cdd:COG0651   118 AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLA 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  95 SLTATIALT----------MKLGMAPFHFWVPE-----------VTQGISLMTGM--LLLTWQKLAPISIMLQIHLWvnl 151
Cdd:COG0651   198 ELDPGLLLAafalllvgfgIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGTL--- 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 152 ntLLPIAISSVLVGGWGGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYL----TLTIVMF----TTLNLNT 223
Cdd:COG0651   275 --LLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFlaagAIERATG 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1197511598 224 STTTLTLSSLWNKTPMITLTIMIILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLIYNTS 301
Cdd:COG0651   353 TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-341 9.24e-10

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 53.80  E-value: 9.24e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1197511598 291 YFYMRLIYNTSLTLFPTFNNTKMKWQLQITKQTQLMSPLIILSTLSLPLSP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
9-209 5.47e-07

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 51.21  E-value: 5.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598   9 IAITIFTGTMLTMIGSHWLLMWIGLEinTLGIIPILMKNH---KPRSTEAATKYFLVQTTASMLLMFTIAF-NAVHSGQW 84
Cdd:PRK02504  115 ILLTATLGGMFLSGATELVMIFISLE--TLSIASYLLTGYmkrDPRSNEAALKYLLIGAASSAIFLYGSSLlYGLSGGST 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  85 NIIDSHNQLT---SLTATIALTM-------KLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHL------- 147
Cdd:PRK02504  193 QLSAIALALItspSLGLALALVFviagiafKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLVtafpsfd 272

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1197511598 148 --WVNLNTLLpiAISSVLVGGWGGLNQTQLRKILAYSSITHMGWMMAILTFCP----SLTVLNLLIYL 209
Cdd:PRK02504  273 eqWKLLFTAL--AILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTeagyASMVFYLLAYL 338
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-209 9.85e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 50.26  E-value: 9.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  33 LEINTLGIIPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHSGQWNIIDSHNQL----TSLTAT----IALTM 104
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALaenpTVVTAFgfvlLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 105 KLGMAPFHFWVPE--------VTQGIS-LMT-----GMLLLTWQKLAPISIMLQIHLWVnlntLLPIAISSVLVGGWGGL 170
Cdd:PRK08375  215 KAAVFPLHTWLPRaypaappvVTALLSgLVTkvavyALIRIYFTVFGGDFRFALGLGWL----LAVLALLSMLVGSLAAL 290

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1197511598 171 NQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYL 209
Cdd:PRK08375  291 GQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHL 329
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 55-192 9.64e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 47.00  E-value: 9.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  55 AATKYFLVQTTASMLLMFTIAFNAVHSGQW--NIIDSHNQLTSLTAT--------IALTMKLGMAPFHFWVPEV-----T 119
Cdd:COG1008   162 AAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTAQlllflaffIAFAVKVPMFPFHTWLPDAhveapT 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 120 QGISLMTGMLL----------------LTWQKLAPIsimlqihlwvnlntLLPIAISSVLVGGWGGLNQTQLRKILAYSS 183
Cdd:COG1008   242 AGSVLLAGVLLkmggygllrfalplfpEASAYFAPL--------------LAALGVIGIIYGALVALAQTDLKRLIAYSS 307


                  ....*....
gi 1197511598 184 ITHMGWMMA 192
Cdd:COG1008   308 VSHMGFVLL 316
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 11-194 1.00e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 47.07  E-value: 1.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  11 ITIFTGTMLTM-IGSHWLLMWIGLEINTL------GIipilmKNHKPRSTEAATKYFLVQTTASMLLMFTIAFNAVHSGQ 83
Cdd:COG1009   117 LLLFMAAMLGLvLSDNLLLLFVFWELVGLcsylliGF-----WYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGT 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  84 WNIID----SHNQLTSLTATIALTM-------KLGMAPFHFWVPE-----------------VTQGISLMTgmllltwqK 135
Cdd:COG1009   192 LNFSEllaaAPTILSSPLLTLILLLlllgafgKSAQFPLHFWLPDamegptpvsallhaatmVKAGVYLLA--------R 263

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1197511598 136 LAPISIMLQIHLWVnlntLLPIAISSVLVGGWGGLNQTQLRKILAYSSITHMGWMMAIL 194
Cdd:COG1009   264 LSPLFALSPVWLTV----VAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-191 3.06e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 45.47  E-value: 3.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  33 LEINTL-GIIPILMKNHKPRSTEAATKYFLVQTTASMLLMFTIAfnaVHSGQWN------IIDSHNQLTSLTATIALT-- 103
Cdd:PRK08376  150 LEIMSIaSYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGIA---LLYGQYGtlnmayLAVKMSENPTVVAKIALAlf 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 104 -----MKLGMAPFHFWVPEV-TQGISLMTGMLLLTWQ----KLAPISIMLqIHLWVNLNTL----LPIAISSVLVGGWGG 169
Cdd:PRK08376  227 iaglaMKSGAVPVHMWLPDAyPAAPSSISAMLLVIKQaglyALARVLFSI-YGPAINLATVgwviIILGCLTMFVGVAMA 305

                         170       180
                  ....*....|....*....|..
gi 1197511598 170 LNQTQLRKILAYSSITHMGWMM 191
Cdd:PRK08376  306 VVQKDVKRLLAYHSVSQIGYML 327
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 49-196 4.57e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 44.93  E-value: 4.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  49 KPRSTEAATKYFLVQTTAS--MLLMFtIAFNAVHSGQWNIIDSHNQLTSLTAT--------IALTMKLGMAPFHFWVPEV 118
Cdd:TIGR01972 151 GPNRIYAAMKFFLYTLAGSllMLLAI-LGLYFLGGGTFDLLELLNLPLPFGVQtwlflaffIAFAVKVPLFPLHTWLPDA 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 119 -----TQGISLMTGMLLltwqKLAPISIM---LQI--HLWVNLNTLLPI-AISSVLVGGWGGLNQTQLRKILAYSSITHM 187
Cdd:TIGR01972 230 hveapTAGSVILAGVLL----KMGTYGFLrfnLPLfpDASLYFAPVLAAlGVIAIIYGALIALAQTDIKRLIAYSSISHM 305

                         170
                  ....*....|
gi 1197511598 188 GW-MMAILTF 196
Cdd:TIGR01972 306 GFvLLGIFSF 315
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
100-191 7.54e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 41.22  E-value: 7.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 100 IALTMKLGMAPFHFWVP----EVTQGIS-LMTGMLL-LTWQKLAPISIMLQIHLWVNLN-TLLPIAISSVLVGGWGGLNQ 172
Cdd:PRK06473  213 VGFGIKIPLVPFHTWLPdahvEASTPVSvLLAGVLLkLGTYGLLRFGVGLFPEAWVYLApWLATWAVVSVLYGASCAIAQ 292

                          90
                  ....*....|....*....
gi 1197511598 173 TQLRKILAYSSITHMGWMM 191
Cdd:PRK06473  293 KDMKKMVAYSSIGHMGYIL 311
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 14-194 1.96e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 40.29  E-value: 1.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  14 FTGTMLTMIGS-HWLLMWIGLEINTlgIIPILMKNH---KPRSTEAATKYFLVqTTASMLLMFT-IAFNAVHSGQWNIID 88
Cdd:PRK12644  115 FAGAMFGLVTSdNLLLLYVFWELTT--VLSFLLIGHyaeRAASRRAALQALLV-TTAGGLAMLVgIIILGQAAGTYRLSE 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  89 -SHNQLTSLTATIALTM-------KLGMAPFHFWVPE-----------------VTQGISLMTgmllltwqKLAPISIML 143
Cdd:PRK12644  192 lLADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGamaaptpvsaylhaaamVKAGIYLVA--------RLAPGFADV 263

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1197511598 144 QIHLWvnlnTLLPIAISSVLVGGWGGLNQTQLRKILAYSSITHMGWMMAIL 194
Cdd:PRK12644  264 PVWRP----TVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLV 310
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-191 2.10e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 39.63  E-value: 2.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  55 AATKYFLVQTTASMLLMF----------TIAFNAVHSGQWNIIDSHNQLTSLTATIALTMKLGMAPFHFWVP----EVTQ 120
Cdd:PRK12561  138 AATKFILYTALASIFILVaglalalsgdTFTFDLAELGAKSYPLALELLLYAGFLIAFGVKLPIFPLHTWLPdahgEASA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1197511598 121 GISLMTGMLLLTWQKLAPISIMLQI----HLWVNlNTLLPIAISSVLVGGWGGLNQTQLRKILAYSSITHMGWMM 191
Cdd:PRK12561  218 PVSMILAGVLLKMGGYALIRFNVQMlpdaHVYFA-PALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-299 4.14e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 39.03  E-value: 4.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598   2 NPTILSLIAITIFTGtMLTMIGSHWLLMWIGLEINTLGIIPILMKNHKPRSTEAATKYFLVQTTASMLLMFT---IAFNA 78
Cdd:PRK06589  115 SSRFLFFFNLTILIG-VLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPaviLIYTK 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  79 VHSGQW---NIIDSHNQLTSLTATIALTMKLGMAPFHFWVPE-----------------VTQGISLMTGMLLLTWqKLAP 138
Cdd:PRK06589  194 TGNLDFvsgGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAamvahypvsallhavivVKTGLFCIYKILLYIF-GLSY 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 139 ISIMLQIHLWvnlntLLPIAISSVLVGGWGGLNQTQLRKILAYSSITHMGWMMAILTFCPSLTVLNLLIYL--------T 210
Cdd:PRK06589  273 LQRIFAEFNW-----LIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLvshsfakiC 347

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 211 LTIVMFTTLNLNTSTTTLTLSSLWNKTPMITLTIMIILLSLGGLPPLTGFLPKWAIIQELSKNNNITTATIMAIM----A 286
Cdd:PRK06589  348 LFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVviasS 427

                         330
                  ....*....|...
gi 1197511598 287 LLNLYFYMRLIYN 299
Cdd:PRK06589  428 ILSALYLLKILSS 440
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 28-191 5.27e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 38.58  E-value: 5.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  28 LMWIGLEINTLGIIPILMKNHKPRSTEAATKYFLVQTTA------SMLLMFTIAFNAVHSG--QWNIIDSHNQLTS---- 95
Cdd:PRK08676  126 LFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGtlNWTELAAHASLLSpsvl 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  96 ----LTATIALTMKLGMAPFHFWVPEV-TQGISLMTGMLLLTWQKLAPISIMLQIHLWVN-------LNTLLPIAISSVL 163
Cdd:PRK08676  206 gasfLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSALLRQsgaaeqfSNVLIGLGIFSIA 285

                         170       180
                  ....*....|....*....|....*...
gi 1197511598 164 VGGWGGLNQTQLRKILAYSSITHMGWMM 191
Cdd:PRK08676  286 VAAFSMLSQRNLKKLIAFSSIEHMGLML 313
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 102-315 5.36e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 37.93  E-value: 5.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 102 LTMKLGMAPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHLWVNLNTLL-PIAISSVLVggwggLNQTQLRKILA 180
Cdd:MTH00091   67 LMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLfGLLICFFQM-----FLLKSYKNLLI 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598 181 YSSITHMGWMMAILTFCPSLTVLNLLIYLTLTIVMFttlnlntstttltlsSLWNKTPMITLTIMIILLSLGGLPPLTGF 260
Cdd:MTH00091  142 LSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLI---------------PKFNNVNKLNFVSWETLLVFMNLPFSVTF 206

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1197511598 261 LPKWAIIQELSKNNNITTATIMAIMALLNLYFYMRLIYNTSLTLFPTFNNTKMKW 315
Cdd:MTH00091  207 FVKIFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFF 261
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 13-190 6.45e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 38.37  E-value: 6.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  13 IFTGTML-TMIGSHWLLMWIGLEINTLGIIPILMKNHKPRSTEAATKYFLVQTTA------SMLLMFTIAFNAVHSGQ-- 83
Cdd:PRK06458  116 LFLFTMLlALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGvafalfGTILVYANAATVMGDGEma 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511598  84 --WNIIDSHN-----QLTSLTATIALT---MKLGMAPFHFWVP----EVTQGISLMTGMLLLTWQKLAPIS---IMLQIH 146
Cdd:PRK06458  196 ilWTELLKHAslldpTLMKLAFVFLLIgfgTKVGLFPMHAWLPdahsEAPSPVSALLSGVLLNVALYAVLRyyiLIDAAI 275

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1197511598 147 LWVNLNTLLPI-AISSVLVGGWGGLNQTQLRKILAYSSITHMGWM 190
Cdd:PRK06458  276 GSDFPGRLLLIfGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLI 320
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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