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Conserved domains on  [gi|1197511570|ref|YP_009368271|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Lepilemur jamesorum]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
2-347 2.27e-159

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 449.68  E-value: 2.27e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   2 KPTILPLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHS 81
Cdd:MTH00105    2 NPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYS 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  82 GQWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISS 161
Cdd:MTH00105   82 GQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILS 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 162 VLVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMIT 241
Cdd:MTH00105  162 ILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMT 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 242 LTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQTTK 321
Cdd:MTH00105  242 SLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTK 321
                         330       340
                  ....*....|....*....|....*.
gi 1197511570 322 QTQLMPPLIILSTMSLPLSPTFSILH 347
Cdd:MTH00105  322 PMTLLPTLIILSTMLLPLTPMLSILE 347
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
2-347 2.27e-159

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 449.68  E-value: 2.27e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   2 KPTILPLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHS 81
Cdd:MTH00105    2 NPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYS 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  82 GQWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISS 161
Cdd:MTH00105   82 GQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILS 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 162 VLVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMIT 241
Cdd:MTH00105  162 ILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMT 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 242 LTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQTTK 321
Cdd:MTH00105  242 SLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTK 321
                         330       340
                  ....*....|....*....|....*.
gi 1197511570 322 QTQLMPPLIILSTMSLPLSPTFSILH 347
Cdd:MTH00105  322 PMTLLPTLIILSTMLLPLTPMLSILE 347
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
25-281 8.23e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 90.84  E-value: 8.23e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  25 HWLLMWIGLEINMLSIIP-ILMKNYKPRSTEAATKYFLVQTTASMLLMF----------TIVFNAMHSGQWNIINSHNQ- 92
Cdd:pfam00361   3 DLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFgislmynytgTLSFDELSKALTGGLNSSGLl 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  93 LTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLL-TWQKLAPISIM-----LQIHPWTNLNILLLIAISSVLVGG 166
Cdd:pfam00361  83 LLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLLGS 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 167 WGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTM---------LTLSNLWNKT 237
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIyrrvhtrniRDYGGLAKTM 242
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1197511570 238 PMITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATI 281
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
7-298 1.95e-19

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 89.02  E-value: 1.95e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   7 PLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWN 85
Cdd:COG1007   105 YALLLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  86 IIN-----SHNQLTPLTTTIALTM-------KLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQI-------- 145
Cdd:COG1007   185 LAGiaaalAAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveafpgl 264
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 146 -HPWTNlnILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYL---------ALTIIM 215
Cdd:COG1007   265 aADWQL--LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLlaylfmnlgAFAVIL 342
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 216 FTTLNLNTNTTMLTLSNLWNKTPMITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMR 295
Cdd:COG1007   343 LLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422

                  ...
gi 1197511570 296 LIY 298
Cdd:COG1007   423 VVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
8-297 4.98e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 87.70  E-value: 4.98e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   8 LIMISIFtGTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWNI 86
Cdd:TIGR01770 107 LLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  87 INSHNQLTPLTTTI------------ALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQI--------- 145
Cdd:TIGR01770 186 EDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgfs 265
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 146 HPWTNlnILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNT 225
Cdd:TIGR01770 266 EAWQI--FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSL 343
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 226 TMLT----------LSNLWNKTPMITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMR 295
Cdd:TIGR01770 344 LRSYkdewieyisdFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423

                  ..
gi 1197511570 296 LI 297
Cdd:TIGR01770 424 VV 425
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
2-347 2.27e-159

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 449.68  E-value: 2.27e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   2 KPTILPLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHS 81
Cdd:MTH00105    2 NPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYS 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  82 GQWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISS 161
Cdd:MTH00105   82 GQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILS 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 162 VLVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMIT 241
Cdd:MTH00105  162 ILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMT 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 242 LTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQTTK 321
Cdd:MTH00105  242 SLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTK 321
                         330       340
                  ....*....|....*....|....*.
gi 1197511570 322 QTQLMPPLIILSTMSLPLSPTFSILH 347
Cdd:MTH00105  322 PMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
3-346 5.60e-110

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 324.45  E-value: 5.60e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   3 PTILPLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSG 82
Cdd:MTH00135    3 PYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  83 QWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPwTNLNILLLIAISSV 162
Cdd:MTH00135   83 QWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP-TNPTLLITLGLTST 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 163 LVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMITL 242
Cdd:MTH00135  162 LVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTA 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 243 TIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQTTKQ 322
Cdd:MTH00135  242 LTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQL 321
                         330       340
                  ....*....|....*....|....
gi 1197511570 323 TQLMPPLIILSTMSLPLSPTFSIL 346
Cdd:MTH00135  322 TLPLAISTTATLMLLPLTPAILAL 345
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
3-342 7.59e-110

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 324.08  E-value: 7.59e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   3 PTILPLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSG 82
Cdd:MTH00112    3 PHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  83 QWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISSV 162
Cdd:MTH00112   83 QWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILST 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 163 LVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMITL 242
Cdd:MTH00112  163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 243 TIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLqTTKQ 322
Cdd:MTH00112  243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRT-KPKK 321
                         330       340
                  ....*....|....*....|
gi 1197511570 323 TQLMPPLIILSTMSLPLSPT 342
Cdd:MTH00112  322 NTLTATLTTLSTLLLPLSPM 341
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
3-342 3.85e-108

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 319.56  E-value: 3.85e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   3 PTILPLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSG 82
Cdd:MTH00070    3 PYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  83 QWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISSV 162
Cdd:MTH00070   83 EWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLST 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 163 LVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMITL 242
Cdd:MTH00070  163 LIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTS 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 243 TIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQtTKQ 322
Cdd:MTH00070  243 MMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK-NKT 321
                         330       340
                  ....*....|....*....|
gi 1197511570 323 TQLMPPLIILSTMSLPLSPT 342
Cdd:MTH00070  322 NNLLSLTIILSLMLLPITPT 341
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
3-346 2.86e-79

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 246.03  E-value: 2.86e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   3 PTILPLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSG 82
Cdd:MTH00200    3 PLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  83 QWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISSV 162
Cdd:MTH00200   83 QWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSV 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 163 LVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMITL 242
Cdd:MTH00200  163 LVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSM 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 243 TIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQTTKQ 322
Cdd:MTH00200  243 LLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSN 322
                         330       340
                  ....*....|....*....|....
gi 1197511570 323 TqLMPPLIILSTMSLPLSPTFSIL 346
Cdd:MTH00200  323 L-LVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
4-307 1.93e-73

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 230.97  E-value: 1.93e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   4 TILPLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQ 83
Cdd:MTH00041    4 NVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGS 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  84 WNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISSVL 163
Cdd:MTH00041   84 WSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVL 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 164 VGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMITLT 243
Cdd:MTH00041  164 VGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFL 243
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1197511570 244 IMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPT 307
Cdd:MTH00041  244 FILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQ 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
8-346 2.24e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 168.46  E-value: 2.24e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   8 LIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWNII 87
Cdd:MTH00160    9 LFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLFNNI 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  88 NShnqltpLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIhpwTNLNILLLIAISSVLVGGW 167
Cdd:MTH00160   89 SS------MLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIGAI 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 168 GGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMITLTIMIA 247
Cdd:MTH00160  160 GGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLN 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 248 LLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYStslTLFPTFNNTKMKWQLQTTKQTQLMP 327
Cdd:MTH00160  240 LLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYS---SLMLNYNKNKWNLKKKKNKFSLILN 316
                         330
                  ....*....|....*....
gi 1197511570 328 PLIILSTMSLPLSPTFSIL 346
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
13-315 1.36e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 160.82  E-value: 1.36e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  13 IFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWNIInshnq 92
Cdd:MTH00144   13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  93 ltpLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNL-NILLLIAISSVLVGGWGGLN 171
Cdd:MTH00144   88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLN 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 172 QTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLwNKTPMITLTIMIALLSL 251
Cdd:MTH00144  165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSIISLLLSL 243
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1197511570 252 GGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPTFNNTKMKW 315
Cdd:MTH00144  244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
8-312 2.58e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 154.94  E-value: 2.58e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   8 LIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWNII 87
Cdd:MTH00011   10 LFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLKNI 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  88 nshnqlTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISSVLVGGW 167
Cdd:MTH00011   90 ------TALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGL 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 168 GGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMITLTIMIA 247
Cdd:MTH00011  164 GGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIM 243
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1197511570 248 LLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYStSLTLFPTFNNTK 312
Cdd:MTH00011  244 LLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN-FMYLSPTFSSLK 307
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
8-339 2.75e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 130.95  E-value: 2.75e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   8 LIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHsgqwnii 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSN------- 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  88 NSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHpwTNLNILLLIAISSVLVGGW 167
Cdd:MTH00197   75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNS--SSFMGLLICSVLSSLIGGI 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 168 GGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMITLTIMIA 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 248 LLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPTFNNTKMKwqlqttkqTQLMP 327
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKI--------NLLYS 304
                         330
                  ....*....|..
gi 1197511570 328 PLIILSTMSLPL 339
Cdd:MTH00197  305 GLFILLMMMLPL 316
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
7-298 3.70e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 99.71  E-value: 3.70e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   7 PLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWN 85
Cdd:MTH00199  100 PILILIVALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETS 179
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  86 IINSHNQLT----PLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNlnILLLIAISS 161
Cdd:MTH00199  180 IQGINSILTgdvgKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLS 257
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 162 VLVGGWGGLNQTQLRKILAYSSIAHMG---WMMAILTFCP-SLTVLNLFIYLALTIIMFTTLNLNTNTTMLT--LSNLWN 235
Cdd:MTH00199  258 IIYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSIILSLKLTKGLIveVSGLSR 337
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1197511570 236 KTPMITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIY 298
Cdd:MTH00199  338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ 400
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
16-297 2.28e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 93.56  E-value: 2.28e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  16 GTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIV-------------FNAMHS 81
Cdd:MTH00196    5 GILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCAllcgttgglhlsyINLVLN 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  82 GQWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPwtNLNILLLIAISS 161
Cdd:MTH00196   85 SGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGGLFS 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 162 VLVGGWGGLNQTQLRKILAYSSIAHMG---WMMAILTFC---PSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWN 235
Cdd:MTH00196  163 LFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFEsiqASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSGLSR 242
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197511570 236 KTPMITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLI 297
Cdd:MTH00196  243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
25-281 8.23e-21

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 90.84  E-value: 8.23e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  25 HWLLMWIGLEINMLSIIP-ILMKNYKPRSTEAATKYFLVQTTASMLLMF----------TIVFNAMHSGQWNIINSHNQ- 92
Cdd:pfam00361   3 DLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFgislmynytgTLSFDELSKALTGGLNSSGLl 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  93 LTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLL-TWQKLAPISIM-----LQIHPWTNLNILLLIAISSVLVGG 166
Cdd:pfam00361  83 LLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLLGS 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 167 WGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTM---------LTLSNLWNKT 237
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIyrrvhtrniRDYGGLAKTM 242
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1197511570 238 PMITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATI 281
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
7-298 1.95e-19

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 89.02  E-value: 1.95e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   7 PLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWN 85
Cdd:COG1007   105 YALLLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  86 IIN-----SHNQLTPLTTTIALTM-------KLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQI-------- 145
Cdd:COG1007   185 LAGiaaalAAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveafpgl 264
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 146 -HPWTNlnILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYL---------ALTIIM 215
Cdd:COG1007   265 aADWQL--LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLlaylfmnlgAFAVIL 342
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 216 FTTLNLNTNTTMLTLSNLWNKTPMITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMR 295
Cdd:COG1007   343 LLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422

                  ...
gi 1197511570 296 LIY 298
Cdd:COG1007   423 VVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
8-297 4.98e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 87.70  E-value: 4.98e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   8 LIMISIFtGTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWNI 86
Cdd:TIGR01770 107 LLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  87 INSHNQLTPLTTTI------------ALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQI--------- 145
Cdd:TIGR01770 186 EDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgfs 265
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 146 HPWTNlnILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNT 225
Cdd:TIGR01770 266 EAWQI--FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSL 343
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 226 TMLT----------LSNLWNKTPMITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMR 295
Cdd:TIGR01770 344 LRSYkdewieyisdFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423

                  ..
gi 1197511570 296 LI 297
Cdd:TIGR01770 424 VV 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
7-215 6.03e-17

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 81.41  E-value: 6.03e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   7 PLIMISIFtGTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWN 85
Cdd:PRK05777  107 LLVLFALL-GMMVMVSANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLS 185
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  86 IINSHNQLTPLTTT------------IALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQI-------H 146
Cdd:PRK05777  186 FAGIAKALADGSGNsllllfglvfllVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafggL 265
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1197511570 147 PWTNLNILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIM 215
Cdd:PRK05777  266 SEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFM 334
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
7-301 1.71e-12

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 67.86  E-value: 1.71e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   7 PLIMISIFtGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWNI 86
Cdd:COG0651   111 PLFLLLLA-GMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNM 189
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  87 INSHNQLTPLTTTIALT----------MKLGMTPFHFWVPE-----------VTQGISLMTGM--LLLTWQKLAPISIML 143
Cdd:COG0651   190 ADLAARLAELDPGLLLAafalllvgfgIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPAL 269
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 144 QIHPWtnlniLLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYL---ALTIIMF---- 216
Cdd:COG0651   270 FLGTL-----LLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhALAKALLflaa 344
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 217 -TTLNLNTNTTMLTLSNLWNKTPMITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMR 295
Cdd:COG0651   345 gAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVR 424

                  ....*.
gi 1197511570 296 LIYSTS 301
Cdd:COG0651   425 IFGRAQ 430
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
291-341 1.09e-10

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 56.11  E-value: 1.09e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1197511570 291 YFYMRLIYSTSLTLFPTFNNTKMKWQLQTTKQTQLMPPLIILSTMSLPLSP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
6-191 2.56e-10

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 61.41  E-value: 2.56e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   6 LPLIMIsIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRST---------EAATKYFLVQTTASMLLMF---- 72
Cdd:MTH00198  191 FALVLI-VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFgcal 269
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  73 ------------TIVFNAMHSGqwNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPIS 140
Cdd:MTH00198  270 yfgftgnegmlgTILSATLETT--NIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYI 347
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1197511570 141 IMLQIHPWTNLniLLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:MTH00198  348 LLTSLVITSKL--LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
9-191 2.62e-07

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 51.98  E-value: 2.62e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570   9 IMISIFTGTMLTMIGSHWLLMWIGLEinMLSIIPILMKNY---KPRSTEAATKYFLVQTTASMLLMFTI-VFNAMHSGQW 84
Cdd:PRK02504  115 ILLTATLGGMFLSGATELVMIFISLE--TLSIASYLLTGYmkrDPRSNEAALKYLLIGAASSAIFLYGSsLLYGLSGGST 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  85 N---IINSHNQLTPLTTTIALTM-------KLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLA----PISIMLQIHP--- 147
Cdd:PRK02504  193 QlsaIALALITSPSLGLALALVFviagiafKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPsfd 272
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1197511570 148 --WTNLNILLliAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK02504  273 eqWKLLFTAL--AILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-191 2.85e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 52.02  E-value: 2.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  33 LEINML-SIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIvfnAMHSGQWNIIN-----SHNQLTPLTTTI------ 100
Cdd:PRK08376  150 LEIMSIaSYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNmaylaVKMSENPTVVAKialalf 226
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 101 --ALTMKLGMTPFHFWVPEV-TQGISLMTGMLLLTWQ----KLAPISIML---QIHPWTNLNILLLIAISSVLVGGWGGL 170
Cdd:PRK08376  227 iaGLAMKSGAVPVHMWLPDAyPAAPSSISAMLLVIKQaglyALARVLFSIygpAINLATVGWVIIILGCLTMFVGVAMAV 306
                         170       180
                  ....*....|....*....|.
gi 1197511570 171 NQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYML 327
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
33-195 5.94e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 51.03  E-value: 5.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  33 LEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWNIINSHNQLTPLTTT--------IALTM 104
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAENPTVvtafgfvlLALAL 214
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 105 KLGMTPFHFWVP----EVTQGISLMTGMLLLTWQKLAPISIMLQI------HPWTNLNILLLIAISSVLVGGWGGLNQTQ 174
Cdd:PRK08375  215 KAAVFPLHTWLPraypAAPPVVTALLSGLVTKVAVYALIRIYFTVfggdfrFALGLGWLLAVLALLSMLVGSLAALGQDD 294
                         170       180
                  ....*....|....*....|....
gi 1197511570 175 LRKILAYSSIAHMGWMM---AILT 195
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILlglALLT 318
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
55-192 6.02e-07

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 50.85  E-value: 6.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  55 AATKYFLVQTTASMLLMFTIVFNAMHSGQW--NIINSHNQLTPLTTT--------IALTMKLGMTPFHFWVPEV-----T 119
Cdd:COG1008   162 AAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTAQlllflaffIAFAVKVPMFPFHTWLPDAhveapT 241
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1197511570 120 QGISLMTGMLLltwqKLAP---ISIMLQIHP---WTNLNILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMMA 192
Cdd:COG1008   242 AGSVLLAGVLL----KMGGyglLRFALPLFPeasAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLL 316
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
11-194 9.14e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 50.54  E-value: 9.14e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  11 ISIFTGTMLTM-IGSHWLLMWIGLEI-NMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWNI-- 86
Cdd:COG1009   117 LLLFMAAMLGLvLSDNLLLLFVFWELvGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFse 196
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  87 --INSHNQLTPLTTTIALTM-------KLGMTPFHFWVPE-----------------VTQGISLMTgmllltwqKLAPIs 140
Cdd:COG1009   197 llAAAPTILSSPLLTLILLLlllgafgKSAQFPLHFWLPDamegptpvsallhaatmVKAGVYLLA--------RLSPL- 267
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1197511570 141 imLQIHPWTnLNILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMMAIL 194
Cdd:COG1009   268 --FALSPVW-LTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
49-196 1.01e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 50.32  E-value: 1.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  49 KPRSTEAATKYFLVQTTASMLL---MFTIVFNAMHSGQWNIINSHNQLTPLTTT------IALTMKLGMTPFHFWVPEV- 118
Cdd:TIGR01972 151 GPNRIYAAMKFFLYTLAGSLLMllaILGLYFLGGGTFDLLELLNLPLPFGVQTWlflaffIAFAVKVPLFPLHTWLPDAh 230
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 119 ----TQGISLMTGMLLltwqKLAPISIM---LQIHPWTNLN---ILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMG 188
Cdd:TIGR01972 231 veapTAGSVILAGVLL----KMGTYGFLrfnLPLFPDASLYfapVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMG 306

                  ....*....
gi 1197511570 189 W-MMAILTF 196
Cdd:TIGR01972 307 FvLLGIFSF 315
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
55-191 4.04e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 45.41  E-value: 4.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  55 AATKYFLVQTTASMLLMFTIVFNAMHSGQ--WNIINSHNQLTPLTTT--------IALTMKLGMTPFHFWVP----EVTQ 120
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAKSYPLALElllyagflIAFGVKLPIFPLHTWLPdahgEASA 217
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1197511570 121 GISLMTGMLLLTWQKLAPISIMLQIHPWTNLN---ILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK12561  218 PVSMILAGVLLKMGGYALIRFNVQMLPDAHVYfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
55-191 2.60e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 42.50  E-value: 2.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  55 AATKYFLVQTTASMLLMFTIVfnAMHSGQWNIINSHNQLTPLTTTIALTM--------------KLGMTPFHFWVPEV-- 118
Cdd:PRK05846  162 AATKFFLYTLLGSLLMLVAII--YLVVVYYNATGTFDIADLLNLPLPPGVqywlflaffiafavKMPMFPLHTWLPDAhv 239
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 119 ---TQGISLMTGMLLltwqKLAP---ISIMLQIHPWTNLN---ILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGW 189
Cdd:PRK05846  240 qapTAGSVLLAGILL----KMGAyglLRFSLPLFPDASHEfapIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315

                  ..
gi 1197511570 190 MM 191
Cdd:PRK05846  316 VT 317
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
100-191 1.07e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 40.84  E-value: 1.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 100 IALTMKLGMTPFHFWVP----EVTQGIS-LMTGMLL-LTWQKLAPISIMLQIHPWTNLN-ILLLIAISSVLVGGWGGLNQ 172
Cdd:PRK06473  213 VGFGIKIPLVPFHTWLPdahvEASTPVSvLLAGVLLkLGTYGLLRFGVGLFPEAWVYLApWLATWAVVSVLYGASCAIAQ 292
                          90
                  ....*....|....*....
gi 1197511570 173 TQLRKILAYSSIAHMGWMM 191
Cdd:PRK06473  293 KDMKKMVAYSSIGHMGYIL 311
PRK12650 PRK12650
DUF4040 family protein;
94-192 1.25e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.80  E-value: 1.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  94 TPLTTTIALTM------KLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHP-------WtnlNILLLIA-I 159
Cdd:PRK12650  204 PGLTTVVAVLIavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPvfhdvavW---NWLLIIVgM 280
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1197511570 160 SSVLVGGWGGLNQTQLRKILAYSSIAHMGWMMA 192
Cdd:PRK12650  281 ITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVA 313
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
10-191 1.76e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.10  E-value: 1.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  10 MISIFTGTMLTMIGS----HWLLMWiglEINMLSIIPILMKNYKPRSTEAATKYFLVQT---TASMLLMFTIVFNAMHSG 82
Cdd:PRK08667  116 LTALFILSMLGVVASantfSFLFFW---EIMALSSFFLVMNDYQEEETQRAGIFYFVMTqlsTVFLMLGIIVLFIQTGSF 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  83 QWNIINSHNQLTPLT---TTIALTMKLGMTPFHFWVPEVTQGI-----SLMTGMLLLT--WQKLAPISIMLQIHPWTNLN 152
Cdd:PRK08667  193 ELSPLGASAGILSLVfllLFLGFGIKAGIIPFHKWLPYAHPASpsnvsALMSGVMLKVavYGLVRFLMDVLSPELWWGVL 272
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1197511570 153 ILLLIAISSVLvGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK08667  273 ILLAGSISALL-GVIYALKEHDLKGLLAYSSIENIGIIL 310
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
10-190 3.84e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 39.14  E-value: 3.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  10 MISIFTGTML-TMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVF------NAMHSG 82
Cdd:PRK06458  113 MYQLFLFTMLlALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTILvyanaaTVMGDG 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  83 Q----WNIINSHN-QLTPLTTTIALTM-------KLGMTPFHFWVP----EVTQGISLMTGMLLLTWQKLAPIS--IMLQ 144
Cdd:PRK06458  193 EmailWTELLKHAsLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPdahsEAPSPVSALLSGVLLNVALYAVLRyyILID 272
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1197511570 145 IHPWTNL--NILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWM 190
Cdd:PRK06458  273 AAIGSDFpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLI 320
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
28-191 3.94e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 38.97  E-value: 3.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  28 LMWIGLEIN-MLSIIPILMKNYKpRSTEAATKYFLVQTTA------SMLLMFTIVFNAMHSG--QWNIINSH-NQLTPLT 97
Cdd:PRK08676  126 LFWIFAELTtVFSAMLIAILSAR-ENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGtlNWTELAAHaSLLSPSV 204
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  98 TTIALTM-------KLGMTPFHFWVPEV-TQGISLMTGMLLLTWQKLAPISIM--------LQIHPwTNLNILLLIAISS 161
Cdd:PRK08676  205 LGASFLFifigflaKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILrlsallrqSGAAE-QFSNVLIGLGIFS 283
                         170       180       190
                  ....*....|....*....|....*....|
gi 1197511570 162 VLVGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK08676  284 IAVAAFSMLSQRNLKKLIAFSSIEHMGLML 313
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-191 8.14e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 37.77  E-value: 8.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570  55 AATKyFLVQTTASMLLMFT----IVF-NAMHSGQWNIINSHNqLTPLTTTIALTM-------KLGMTPFHFWVP----EV 118
Cdd:PRK07363  158 ASIK-FLIYTAVSGLLVLAaflgIVWlSGSTSFDYDAISTQN-LSLNTQLILLTGlllgfgiKIPLVPLHTWLPdaytEA 235
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1197511570 119 TQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNI---LLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK07363  236 SPAVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVapgLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYIL 311
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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