|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
2-347 |
2.27e-159 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 449.68 E-value: 2.27e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 2 KPTILPLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHS 81
Cdd:MTH00105 2 NPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 82 GQWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISS 161
Cdd:MTH00105 82 GQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 162 VLVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMIT 241
Cdd:MTH00105 162 ILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 242 LTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQTTK 321
Cdd:MTH00105 242 SLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTK 321
|
330 340
....*....|....*....|....*.
gi 1197511570 322 QTQLMPPLIILSTMSLPLSPTFSILH 347
Cdd:MTH00105 322 PMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
3-346 |
5.60e-110 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 324.45 E-value: 5.60e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 3 PTILPLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSG 82
Cdd:MTH00135 3 PYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 83 QWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPwTNLNILLLIAISSV 162
Cdd:MTH00135 83 QWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP-TNPTLLITLGLTST 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 163 LVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMITL 242
Cdd:MTH00135 162 LVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 243 TIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQTTKQ 322
Cdd:MTH00135 242 LTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQL 321
|
330 340
....*....|....*....|....
gi 1197511570 323 TQLMPPLIILSTMSLPLSPTFSIL 346
Cdd:MTH00135 322 TLPLAISTTATLMLLPLTPAILAL 345
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
3-342 |
7.59e-110 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 324.08 E-value: 7.59e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 3 PTILPLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSG 82
Cdd:MTH00112 3 PHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 83 QWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISSV 162
Cdd:MTH00112 83 QWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILST 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 163 LVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMITL 242
Cdd:MTH00112 163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 243 TIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLqTTKQ 322
Cdd:MTH00112 243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRT-KPKK 321
|
330 340
....*....|....*....|
gi 1197511570 323 TQLMPPLIILSTMSLPLSPT 342
Cdd:MTH00112 322 NTLTATLTTLSTLLLPLSPM 341
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
3-342 |
3.85e-108 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 319.56 E-value: 3.85e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 3 PTILPLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSG 82
Cdd:MTH00070 3 PYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 83 QWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISSV 162
Cdd:MTH00070 83 EWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLST 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 163 LVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMITL 242
Cdd:MTH00070 163 LIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTS 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 243 TIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQtTKQ 322
Cdd:MTH00070 243 MMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK-NKT 321
|
330 340
....*....|....*....|
gi 1197511570 323 TQLMPPLIILSTMSLPLSPT 342
Cdd:MTH00070 322 NNLLSLTIILSLMLLPITPT 341
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
3-346 |
2.86e-79 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 246.03 E-value: 2.86e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 3 PTILPLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSG 82
Cdd:MTH00200 3 PLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 83 QWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISSV 162
Cdd:MTH00200 83 QWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 163 LVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMITL 242
Cdd:MTH00200 163 LVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSM 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 243 TIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPTFNNTKMKWQLQTTKQ 322
Cdd:MTH00200 243 LLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSN 322
|
330 340
....*....|....*....|....
gi 1197511570 323 TqLMPPLIILSTMSLPLSPTFSIL 346
Cdd:MTH00200 323 L-LVGLLLLLSILGLPLTPQLLFL 345
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
4-307 |
1.93e-73 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 230.97 E-value: 1.93e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 4 TILPLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQ 83
Cdd:MTH00041 4 NVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 84 WNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISSVL 163
Cdd:MTH00041 84 WSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 164 VGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMITLT 243
Cdd:MTH00041 164 VGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFL 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1197511570 244 IMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPT 307
Cdd:MTH00041 244 FILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQ 307
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
8-346 |
2.24e-49 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 168.46 E-value: 2.24e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 8 LIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWNII 87
Cdd:MTH00160 9 LFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLFNNI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 88 NShnqltpLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIhpwTNLNILLLIAISSVLVGGW 167
Cdd:MTH00160 89 SS------MLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIGAI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 168 GGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMITLTIMIA 247
Cdd:MTH00160 160 GGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 248 LLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYStslTLFPTFNNTKMKWQLQTTKQTQLMP 327
Cdd:MTH00160 240 LLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYS---SLMLNYNKNKWNLKKKKNKFSLILN 316
|
330
....*....|....*....
gi 1197511570 328 PLIILSTMSLPLSPTFSIL 346
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
13-315 |
1.36e-46 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 160.82 E-value: 1.36e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 13 IFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWNIInshnq 92
Cdd:MTH00144 13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 93 ltpLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNL-NILLLIAISSVLVGGWGGLN 171
Cdd:MTH00144 88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLN 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 172 QTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLwNKTPMITLTIMIALLSL 251
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSIISLLLSL 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1197511570 252 GGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPTFNNTKMKW 315
Cdd:MTH00144 244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
8-312 |
2.58e-44 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 154.94 E-value: 2.58e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 8 LIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWNII 87
Cdd:MTH00011 10 LFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLKNI 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 88 nshnqlTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNILLLIAISSVLVGGW 167
Cdd:MTH00011 90 ------TALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 168 GGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMITLTIMIA 247
Cdd:MTH00011 164 GGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIM 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1197511570 248 LLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYStSLTLFPTFNNTK 312
Cdd:MTH00011 244 LLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN-FMYLSPTFSSLK 307
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-339 |
2.75e-35 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 130.95 E-value: 2.75e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 8 LIMISIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHsgqwnii 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSN------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 88 NSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHpwTNLNILLLIAISSVLVGGW 167
Cdd:MTH00197 75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNS--SSFMGLLICSVLSSLIGGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 168 GGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWNKTPMITLTIMIA 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 248 LLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIYSTSLTLFPTFNNTKMKwqlqttkqTQLMP 327
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKI--------NLLYS 304
|
330
....*....|..
gi 1197511570 328 PLIILSTMSLPL 339
Cdd:MTH00197 305 GLFILLMMMLPL 316
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
7-298 |
3.70e-23 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 99.71 E-value: 3.70e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 7 PLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWN 85
Cdd:MTH00199 100 PILILIVALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETS 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 86 IINSHNQLT----PLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPWTNlnILLLIAISS 161
Cdd:MTH00199 180 IQGINSILTgdvgKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLS 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 162 VLVGGWGGLNQTQLRKILAYSSIAHMG---WMMAILTFCP-SLTVLNLFIYLALTIIMFTTLNLNTNTTMLT--LSNLWN 235
Cdd:MTH00199 258 IIYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSIILSLKLTKGLIveVSGLSR 337
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1197511570 236 KTPMITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLIY 298
Cdd:MTH00199 338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQ 400
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
16-297 |
2.28e-21 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 93.56 E-value: 2.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 16 GTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIV-------------FNAMHS 81
Cdd:MTH00196 5 GILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCAllcgttgglhlsyINLVLN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 82 GQWNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHPwtNLNILLLIAISS 161
Cdd:MTH00196 85 SGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGGLFS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 162 VLVGGWGGLNQTQLRKILAYSSIAHMG---WMMAILTFC---PSLTVLNLFIYLALTIIMFTTLNLNTNTTMLTLSNLWN 235
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFEsiqASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSGLSR 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197511570 236 KTPMITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMRLI 297
Cdd:MTH00196 243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
25-281 |
8.23e-21 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 90.84 E-value: 8.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 25 HWLLMWIGLEINMLSIIP-ILMKNYKPRSTEAATKYFLVQTTASMLLMF----------TIVFNAMHSGQWNIINSHNQ- 92
Cdd:pfam00361 3 DLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFgislmynytgTLSFDELSKALTGGLNSSGLl 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 93 LTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLL-TWQKLAPISIM-----LQIHPWTNLNILLLIAISSVLVGG 166
Cdd:pfam00361 83 LLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllYLPSSPFIQQILLILAIISMLLGS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 167 WGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNTTM---------LTLSNLWNKT 237
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIyrrvhtrniRDYGGLAKTM 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1197511570 238 PMITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATI 281
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
7-298 |
1.95e-19 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 89.02 E-value: 1.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 7 PLIMISIFTGTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWN 85
Cdd:COG1007 105 YALLLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 86 IIN-----SHNQLTPLTTTIALTM-------KLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQI-------- 145
Cdd:COG1007 185 LAGiaaalAAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveafpgl 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 146 -HPWTNlnILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYL---------ALTIIM 215
Cdd:COG1007 265 aADWQL--LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLlaylfmnlgAFAVIL 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 216 FTTLNLNTNTTMLTLSNLWNKTPMITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMR 295
Cdd:COG1007 343 LLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422
|
...
gi 1197511570 296 LIY 298
Cdd:COG1007 423 VVK 425
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-297 |
4.98e-19 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 87.70 E-value: 4.98e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 8 LIMISIFtGTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWNI 86
Cdd:TIGR01770 107 LLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 87 INSHNQLTPLTTTI------------ALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQI--------- 145
Cdd:TIGR01770 186 EDLLLFLSNGMLNIsllllgivlilvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgfs 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 146 HPWTNlnILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIMFTTLNLNTNT 225
Cdd:TIGR01770 266 EAWQI--FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSL 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 226 TMLT----------LSNLWNKTPMITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMR 295
Cdd:TIGR01770 344 LRSYkdewieyisdFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423
|
..
gi 1197511570 296 LI 297
Cdd:TIGR01770 424 VV 425
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
7-215 |
6.03e-17 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 81.41 E-value: 6.03e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 7 PLIMISIFtGTMLTMIGSHWLLMWIGLEINMLSI-IPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWN 85
Cdd:PRK05777 107 LLVLFALL-GMMVMVSANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLS 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 86 IINSHNQLTPLTTT------------IALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQI-------H 146
Cdd:PRK05777 186 FAGIAKALADGSGNsllllfglvfllVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafggL 265
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1197511570 147 PWTNLNILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYLALTIIM 215
Cdd:PRK05777 266 SEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFM 334
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
7-301 |
1.71e-12 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 67.86 E-value: 1.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 7 PLIMISIFtGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWNI 86
Cdd:COG0651 111 PLFLLLLA-GMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNM 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 87 INSHNQLTPLTTTIALT----------MKLGMTPFHFWVPE-----------VTQGISLMTGM--LLLTWQKLAPISIML 143
Cdd:COG0651 190 ADLAARLAELDPGLLLAafalllvgfgIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPAL 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 144 QIHPWtnlniLLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMMAILTFCPSLTVLNLFIYL---ALTIIMF---- 216
Cdd:COG0651 270 FLGTL-----LLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhALAKALLflaa 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 217 -TTLNLNTNTTMLTLSNLWNKTPMITLTIMIALLSLGGLPPLTGFLPKWAIIQELSKNNNITVATIIATMALLNLYFYMR 295
Cdd:COG0651 345 gAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVR 424
|
....*.
gi 1197511570 296 LIYSTS 301
Cdd:COG0651 425 IFGRAQ 430
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-341 |
1.09e-10 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 56.11 E-value: 1.09e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1197511570 291 YFYMRLIYSTSLTLFPTFNNTKMKWQLQTTKQTQLMPPLIILSTMSLPLSP 341
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
6-191 |
2.56e-10 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 61.41 E-value: 2.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 6 LPLIMIsIFTGTMLTMIGSHWLLMWIGLEINMLSIIPILMKNYKPRST---------EAATKYFLVQTTASMLLMF---- 72
Cdd:MTH00198 191 FALVLI-VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFgcal 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 73 ------------TIVFNAMHSGqwNIINSHNQLTPLTTTIALTMKLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPIS 140
Cdd:MTH00198 270 yfgftgnegmlgTILSATLETT--NIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYI 347
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1197511570 141 IMLQIHPWTNLniLLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:MTH00198 348 LLTSLVITSKL--LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
9-191 |
2.62e-07 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 51.98 E-value: 2.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 9 IMISIFTGTMLTMIGSHWLLMWIGLEinMLSIIPILMKNY---KPRSTEAATKYFLVQTTASMLLMFTI-VFNAMHSGQW 84
Cdd:PRK02504 115 ILLTATLGGMFLSGATELVMIFISLE--TLSIASYLLTGYmkrDPRSNEAALKYLLIGAASSAIFLYGSsLLYGLSGGST 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 85 N---IINSHNQLTPLTTTIALTM-------KLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLA----PISIMLQIHP--- 147
Cdd:PRK02504 193 QlsaIALALITSPSLGLALALVFviagiafKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPsfd 272
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1197511570 148 --WTNLNILLliAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK02504 273 eqWKLLFTAL--AILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-191 |
2.85e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 52.02 E-value: 2.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 33 LEINML-SIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIvfnAMHSGQWNIIN-----SHNQLTPLTTTI------ 100
Cdd:PRK08376 150 LEIMSIaSYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNmaylaVKMSENPTVVAKialalf 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 101 --ALTMKLGMTPFHFWVPEV-TQGISLMTGMLLLTWQ----KLAPISIML---QIHPWTNLNILLLIAISSVLVGGWGGL 170
Cdd:PRK08376 227 iaGLAMKSGAVPVHMWLPDAyPAAPSSISAMLLVIKQaglyALARVLFSIygpAINLATVGWVIIILGCLTMFVGVAMAV 306
|
170 180
....*....|....*....|.
gi 1197511570 171 NQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYML 327
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-195 |
5.94e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 51.03 E-value: 5.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 33 LEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWNIINSHNQLTPLTTT--------IALTM 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAENPTVvtafgfvlLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 105 KLGMTPFHFWVP----EVTQGISLMTGMLLLTWQKLAPISIMLQI------HPWTNLNILLLIAISSVLVGGWGGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPraypAAPPVVTALLSGLVTKVAVYALIRIYFTVfggdfrFALGLGWLLAVLALLSMLVGSLAALGQDD 294
|
170 180
....*....|....*....|....
gi 1197511570 175 LRKILAYSSIAHMGWMM---AILT 195
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILlglALLT 318
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
55-192 |
6.02e-07 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 50.85 E-value: 6.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 55 AATKYFLVQTTASMLLMFTIVFNAMHSGQW--NIINSHNQLTPLTTT--------IALTMKLGMTPFHFWVPEV-----T 119
Cdd:COG1008 162 AAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTAQlllflaffIAFAVKVPMFPFHTWLPDAhveapT 241
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1197511570 120 QGISLMTGMLLltwqKLAP---ISIMLQIHP---WTNLNILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMMA 192
Cdd:COG1008 242 AGSVLLAGVLL----KMGGyglLRFALPLFPeasAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLL 316
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
11-194 |
9.14e-07 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 50.54 E-value: 9.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 11 ISIFTGTMLTM-IGSHWLLMWIGLEI-NMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVFNAMHSGQWNI-- 86
Cdd:COG1009 117 LLLFMAAMLGLvLSDNLLLLFVFWELvGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFse 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 87 --INSHNQLTPLTTTIALTM-------KLGMTPFHFWVPE-----------------VTQGISLMTgmllltwqKLAPIs 140
Cdd:COG1009 197 llAAAPTILSSPLLTLILLLlllgafgKSAQFPLHFWLPDamegptpvsallhaatmVKAGVYLLA--------RLSPL- 267
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1197511570 141 imLQIHPWTnLNILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMMAIL 194
Cdd:COG1009 268 --FALSPVW-LTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
49-196 |
1.01e-06 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 50.32 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 49 KPRSTEAATKYFLVQTTASMLL---MFTIVFNAMHSGQWNIINSHNQLTPLTTT------IALTMKLGMTPFHFWVPEV- 118
Cdd:TIGR01972 151 GPNRIYAAMKFFLYTLAGSLLMllaILGLYFLGGGTFDLLELLNLPLPFGVQTWlflaffIAFAVKVPLFPLHTWLPDAh 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 119 ----TQGISLMTGMLLltwqKLAPISIM---LQIHPWTNLN---ILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMG 188
Cdd:TIGR01972 231 veapTAGSVILAGVLL----KMGTYGFLrfnLPLFPDASLYfapVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMG 306
|
....*....
gi 1197511570 189 W-MMAILTF 196
Cdd:TIGR01972 307 FvLLGIFSF 315
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
55-191 |
4.04e-05 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 45.41 E-value: 4.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 55 AATKYFLVQTTASMLLMFTIVFNAMHSGQ--WNIINSHNQLTPLTTT--------IALTMKLGMTPFHFWVP----EVTQ 120
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAKSYPLALElllyagflIAFGVKLPIFPLHTWLPdahgEASA 217
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1197511570 121 GISLMTGMLLLTWQKLAPISIMLQIHPWTNLN---ILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALIRFNVQMLPDAHVYfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
55-191 |
2.60e-04 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 42.50 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 55 AATKYFLVQTTASMLLMFTIVfnAMHSGQWNIINSHNQLTPLTTTIALTM--------------KLGMTPFHFWVPEV-- 118
Cdd:PRK05846 162 AATKFFLYTLLGSLLMLVAII--YLVVVYYNATGTFDIADLLNLPLPPGVqywlflaffiafavKMPMFPLHTWLPDAhv 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 119 ---TQGISLMTGMLLltwqKLAP---ISIMLQIHPWTNLN---ILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGW 189
Cdd:PRK05846 240 qapTAGSVLLAGILL----KMGAyglLRFSLPLFPDASHEfapIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315
|
..
gi 1197511570 190 MM 191
Cdd:PRK05846 316 VT 317
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
100-191 |
1.07e-03 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 40.84 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 100 IALTMKLGMTPFHFWVP----EVTQGIS-LMTGMLL-LTWQKLAPISIMLQIHPWTNLN-ILLLIAISSVLVGGWGGLNQ 172
Cdd:PRK06473 213 VGFGIKIPLVPFHTWLPdahvEASTPVSvLLAGVLLkLGTYGLLRFGVGLFPEAWVYLApWLATWAVVSVLYGASCAIAQ 292
|
90
....*....|....*....
gi 1197511570 173 TQLRKILAYSSIAHMGWMM 191
Cdd:PRK06473 293 KDMKKMVAYSSIGHMGYIL 311
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
94-192 |
1.25e-03 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 40.80 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 94 TPLTTTIALTM------KLGMTPFHFWVPEVTQGISLMTGMLLLTWQKLAPISIMLQIHP-------WtnlNILLLIA-I 159
Cdd:PRK12650 204 PGLTTVVAVLIavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPvfhdvavW---NWLLIIVgM 280
|
90 100 110
....*....|....*....|....*....|...
gi 1197511570 160 SSVLVGGWGGLNQTQLRKILAYSSIAHMGWMMA 192
Cdd:PRK12650 281 ITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVA 313
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
10-191 |
1.76e-03 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 40.10 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 10 MISIFTGTMLTMIGS----HWLLMWiglEINMLSIIPILMKNYKPRSTEAATKYFLVQT---TASMLLMFTIVFNAMHSG 82
Cdd:PRK08667 116 LTALFILSMLGVVASantfSFLFFW---EIMALSSFFLVMNDYQEEETQRAGIFYFVMTqlsTVFLMLGIIVLFIQTGSF 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 83 QWNIINSHNQLTPLT---TTIALTMKLGMTPFHFWVPEVTQGI-----SLMTGMLLLT--WQKLAPISIMLQIHPWTNLN 152
Cdd:PRK08667 193 ELSPLGASAGILSLVfllLFLGFGIKAGIIPFHKWLPYAHPASpsnvsALMSGVMLKVavYGLVRFLMDVLSPELWWGVL 272
|
170 180 190
....*....|....*....|....*....|....*....
gi 1197511570 153 ILLLIAISSVLvGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK08667 273 ILLAGSISALL-GVIYALKEHDLKGLLAYSSIENIGIIL 310
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
10-190 |
3.84e-03 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 39.14 E-value: 3.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 10 MISIFTGTML-TMIGSHWLLMWIGLEINMLSIIPILMKNYKPRSTEAATKYFLVQTTASMLLMFTIVF------NAMHSG 82
Cdd:PRK06458 113 MYQLFLFTMLlALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTILvyanaaTVMGDG 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 83 Q----WNIINSHN-QLTPLTTTIALTM-------KLGMTPFHFWVP----EVTQGISLMTGMLLLTWQKLAPIS--IMLQ 144
Cdd:PRK06458 193 EmailWTELLKHAsLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPdahsEAPSPVSALLSGVLLNVALYAVLRyyILID 272
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1197511570 145 IHPWTNL--NILLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWM 190
Cdd:PRK06458 273 AAIGSDFpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLI 320
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
28-191 |
3.94e-03 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 38.97 E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 28 LMWIGLEIN-MLSIIPILMKNYKpRSTEAATKYFLVQTTA------SMLLMFTIVFNAMHSG--QWNIINSH-NQLTPLT 97
Cdd:PRK08676 126 LFWIFAELTtVFSAMLIAILSAR-ENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGtlNWTELAAHaSLLSPSV 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 98 TTIALTM-------KLGMTPFHFWVPEV-TQGISLMTGMLLLTWQKLAPISIM--------LQIHPwTNLNILLLIAISS 161
Cdd:PRK08676 205 LGASFLFifigflaKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILrlsallrqSGAAE-QFSNVLIGLGIFS 283
|
170 180 190
....*....|....*....|....*....|
gi 1197511570 162 VLVGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK08676 284 IAVAAFSMLSQRNLKKLIAFSSIEHMGLML 313
|
|
| PRK07363 |
PRK07363 |
NADH-quinone oxidoreductase subunit M; |
55-191 |
8.14e-03 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 180945 [Multi-domain] Cd Length: 501 Bit Score: 37.77 E-value: 8.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511570 55 AATKyFLVQTTASMLLMFT----IVF-NAMHSGQWNIINSHNqLTPLTTTIALTM-------KLGMTPFHFWVP----EV 118
Cdd:PRK07363 158 ASIK-FLIYTAVSGLLVLAaflgIVWlSGSTSFDYDAISTQN-LSLNTQLILLTGlllgfgiKIPLVPLHTWLPdaytEA 235
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1197511570 119 TQGISLMTGMLLLTWQKLAPISIMLQIHPWTNLNI---LLLIAISSVLVGGWGGLNQTQLRKILAYSSIAHMGWMM 191
Cdd:PRK07363 236 SPAVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVapgLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYIL 311
|
|
|