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Conserved domains on  [gi|1197511452|ref|YP_009368136|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Lepilemur milanoii]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475903)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 744.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452   1 MLKIIIPTIMLLPVTWYSANSMVWINITLHSLTISLMSLSFLNQTDSNSNNFSSTFFSDPLSSPLLALTMWLLPLTIMAS 80
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  81 QHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00110   81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 161 LVALSFIQNHMGTLNLFMMTYWSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00110  161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 241 YGMMRITTILNPLTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
Cdd:MTH00110  241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 321 LTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNM 400
Cdd:MTH00110  321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1197511452 401 LITATYSLYMLAMTQRGKSLYHMHNLNPSLTRENTLMSMHIFPLLLLTLNPNILMGPTY 459
Cdd:MTH00110  401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
 
Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 744.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452   1 MLKIIIPTIMLLPVTWYSANSMVWINITLHSLTISLMSLSFLNQTDSNSNNFSSTFFSDPLSSPLLALTMWLLPLTIMAS 80
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  81 QHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00110   81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 161 LVALSFIQNHMGTLNLFMMTYWSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00110  161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 241 YGMMRITTILNPLTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
Cdd:MTH00110  241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 321 LTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNM 400
Cdd:MTH00110  321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1197511452 401 LITATYSLYMLAMTQRGKSLYHMHNLNPSLTRENTLMSMHIFPLLLLTLNPNILMGPTY 459
Cdd:MTH00110  401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
59-411 6.64e-71

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 232.28  E-value: 6.64e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  59 DPLSSPLLALTMWLLPLTIMASqhhlSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGN 138
Cdd:COG1008    81 DGISLPLVLLTALLTPLAILAS----WNEIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 139 QtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPNSWSSNLMWmACIMAFMIKMPLYGLHLWLPK 218
Cdd:COG1008   157 E-RRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQLLLFL-AFFIAFAVKVPMFPFHTWLPD 234
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 219 AHVEAPIAGSMILAAILLKLGGYGMMRITTILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:COG1008   235 AHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 298 IVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIG 377
Cdd:COG1008   315 LLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVG 394
                         330       340       350
                  ....*....|....*....|....*....|....
gi 1197511452 378 ELFITMATFSWSNMTIILTGLNMLITATYSLYML 411
Cdd:COG1008   395 EFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
59-411 1.88e-65

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 217.89  E-value: 1.88e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  59 DPLSSPLLALTMWLLPLTIMASQHHLSKepweRKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGN 138
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 139 QTeRLNAGLYFLFYTLIGSLPLLVA---LSFIQNHMGTLNLFMmtywSQELPNSWSSnLMWMACIMAFMIKMPLYGLHLW 215
Cdd:TIGR01972 152 PN-RIYAAMKFFLYTLAGSLLMLLAilgLYFLGGGTFDLLELL----NLPLPFGVQT-WLFLAFFIAFAVKVPLFPLHTW 225
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 216 LPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNP-LTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294
Cdd:TIGR01972 226 LPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHM 305
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSIN 374
Cdd:TIGR01972 306 GFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSG 385
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1197511452 375 LIGELFITMATFSWSNMTIILTGLNMLITATYSLYML 411
Cdd:TIGR01972 386 FVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
112-398 3.79e-63

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 206.01  E-value: 3.79e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 112 ATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPNSWS 191
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 192 SNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNPLTKFMAYPFLMLCLWGMIM 271
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 272 TSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANS-NYERIHNRTMLLARGLQS 350
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDYGGLAK 240
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1197511452 351 LLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGL 398
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
 
Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 744.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452   1 MLKIIIPTIMLLPVTWYSANSMVWINITLHSLTISLMSLSFLNQTDSNSNNFSSTFFSDPLSSPLLALTMWLLPLTIMAS 80
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  81 QHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00110   81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 161 LVALSFIQNHMGTLNLFMMTYWSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00110  161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 241 YGMMRITTILNPLTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
Cdd:MTH00110  241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 321 LTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNM 400
Cdd:MTH00110  321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1197511452 401 LITATYSLYMLAMTQRGKSLYHMHNLNPSLTRENTLMSMHIFPLLLLTLNPNILMGPTY 459
Cdd:MTH00110  401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-441 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 613.74  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452   1 MLKIIIPTIMLLPVTWYSANSMVWINITLHSLTISLMSLSFLNQTDSNSNNFSSTFFSDPLSSPLLALTMWLLPLTIMAS 80
Cdd:MTH00124    1 MLKIILPTIMLIPTTLLSKPKFLWTNTTTYSLLIALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  81 QHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00124   81 QNHLQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 161 LVALSFIQNHMGTLNLFMMTYWSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00124  161 LIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 241 YGMMRITTILNPLTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
Cdd:MTH00124  241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 321 LTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNM 400
Cdd:MTH00124  321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1197511452 401 LITATYSLYMLAMTQRGKSLYHMHNLNPSLTRENTLMSMHI 441
Cdd:MTH00124  401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHI 441
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
1-442 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 564.16  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452   1 MLKIIIPTIMLLPVTWYSANSMVWINITLHSLTISLMSLSFLNQTDSNSNNFSSTFFSDPLSSPLLALTMWLLPLTIMAS 80
Cdd:MTH00068    1 MLKIIIPTLMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLMWFNLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  81 QHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00068   81 QNHLKNEPINRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 161 LVALSFIQNHMGTLNLFMMTYWSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00068  161 LIALLILQNSLGSLSLILLELMSPMQLMTYTNKIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 241 YGMMRITTILNPLTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
Cdd:MTH00068  241 YGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 321 LTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNM 400
Cdd:MTH00068  321 LTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGT 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 1197511452 401 LITATYSLYMLAMTQRGKSLYHMHNLNPSLTRENTLMSMHIF 442
Cdd:MTH00068  401 LITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHIL 442
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
1-441 2.26e-173

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 494.47  E-value: 2.26e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452   1 MLKIIIPTIMLLPVTWYSANSMVWINITLHSLTISLMSLSFLNQTDSNSNNFSSTFF-SDPLSSPLLALTMWLLPLTIMA 79
Cdd:MTH00127    1 MLKILIPTLMLIPTTWLTPAKWLWTTTLAHSLLIALASLTWLKNLSETGWSSLNLYMaTDPLSTPLLVLTCWLLPLMILA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  80 SQHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLP 159
Cdd:MTH00127   81 SQNHTAPEPINRQRMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 160 LLVALSFIQNHMGTLNLFMMTYWSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLG 239
Cdd:MTH00127  161 LLVALLLLQNSTGTLSMLTLQYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 240 GYGMMRITTILNPLTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAH 319
Cdd:MTH00127  241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 320 GLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGLN 399
Cdd:MTH00127  321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 1197511452 400 MLITATYSLYMLAMTQRGKSLYHMHNLNPSLTRENTLMSMHI 441
Cdd:MTH00127  401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHL 442
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
3-442 9.89e-158

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 454.01  E-value: 9.89e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452   3 KIIIPTIMLLPVTWYSANSMVWINITLHSLTISLMSLSFLNQTDSNSNNFSSTFFS-DPLSSPLLALTMWLLPLTIMASQ 81
Cdd:MTH00206    1 KILIPLIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSNLYLSyDPLSSPLVILSCWLLPLMFLASQ 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  82 HHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLL 161
Cdd:MTH00206   81 NHMKNEPINRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 162 VALSFIQNHMGTLNLFMMTYWSQElpnSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGY 241
Cdd:MTH00206  161 IALLFLQNSLGSLSLYILYFSKLT---TWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGY 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 242 GMMRITTILNPLTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGL 321
Cdd:MTH00206  238 GMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGL 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 322 TSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNML 401
Cdd:MTH00206  318 VSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFL 397
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1197511452 402 ITATYSLYMLAMTQRGKSLYHMHNLNPSLTRENTLMSMHIF 442
Cdd:MTH00206  398 FTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLF 438
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
1-442 8.99e-142

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 413.99  E-value: 8.99e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452   1 MLKIIIPTIMLLPVTWYSANSMVWINITLHSLTISLMSLSFL-NQTDSNSNNFSSTFFSDPLSSPLLALTMWLLPLTIMA 79
Cdd:MTH00044    1 MITLILLSLGIAITSWIVPKNKLWPISISQSSLISLLSLFLLnNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  80 SQHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLP 159
Cdd:MTH00044   81 SINHLSNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 160 LLVALSFIQNHMGTLNLFMMTYWSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLG 239
Cdd:MTH00044  161 LLISLIAIYSSSSSLSIPLSELNWLTSLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 240 GYGMMRITTILN-PLTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIA 318
Cdd:MTH00044  241 GYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 319 HGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGL 398
Cdd:MTH00044  321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGL 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1197511452 399 NMLITATYSLYMLAMTQRGKSLYHMHNLNPSLTRENTLMSMHIF 442
Cdd:MTH00044  401 ATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLL 444
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-442 1.01e-111

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 336.36  E-value: 1.01e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452   1 MLKIIIPTIMLLPVTWYSansMVWINITLHSLTISLMSLSFLNQtDSNSNNFSSTFFSDPLSSPLLALTMWLLPLTIMAS 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLK---NSWWLVQSLLFLLSFLFMLLFSL-SFYFSNISYFFGLDLLSFGLILLSFWICMLMILSS 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  81 QHHLSKEPWerKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:MTH00163   77 ESVYKKNNY--SNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPL 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 161 LVALSFIQNHMGTLNLFMMTYwsqelpNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGG 240
Cdd:MTH00163  155 LVGIFYLYNNSGSLSFFLLNF------FGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGG 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 241 YGMMRITTILNPLTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
Cdd:MTH00163  229 YGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHG 308
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 321 LTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNM 400
Cdd:MTH00163  309 LCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLS 388
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 1197511452 401 LITATYSLYMLAMTQRGKSLYHMHNLNPSLTRENTLMSMHIF 442
Cdd:MTH00163  389 FFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWL 430
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
37-442 8.59e-110

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 330.65  E-value: 8.59e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  37 MSLSFLNQTDSNSNNFSSTFFSDPLSSPLLALTMWLLPLTIMASQHhlSKEPWERKKYFLFTLISLQLFLIMTFTATELI 116
Cdd:MTH00150    1 LSLLLLYSSFSSYESLSELFSVDSMSSLLISLSLWISGLMMLASQK--SVKLRNKSSSFSLLVLLLCLILVLAFSVSSLL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 117 MFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPNSWssnLMW 196
Cdd:MTH00150   79 MFYFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSSMG---LWG 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 197 MACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNPLTKFMAYPFLMLCLWGMIMTSLIC 276
Cdd:MTH00150  156 LLVFLAFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLIC 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 277 LRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMS 356
Cdd:MTH00150  236 LRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLS 315
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 357 TWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYMLAMTQRGKSLYHMHNLNPSLTRENTL 436
Cdd:MTH00150  316 LWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLL 395

                  ....*.
gi 1197511452 437 MSMHIF 442
Cdd:MTH00150  396 LLLHWV 401
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
1-442 8.39e-104

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 316.68  E-value: 8.39e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452   1 MLKIIIPTIMLLPVTWYSaNSMVWINITLHSLTISLMSLSFLNQTDSNSNNFSSTFFSDPLSSPLLALTMWLLPLTIMAS 80
Cdd:MTH00014    1 MLKLIMPLISLLLLPLIK-YPWSWALTFSTLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILAS 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  81 QH--HLSKEPwerkKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSL 158
Cdd:MTH00014   80 FKifQNNKAP----KTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASL 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 159 PLLVALSFIQNHMGTLNLFMMTYWSqelPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKL 238
Cdd:MTH00014  156 PLLMSILLIFYTNNSLSMLMSSMEP---PSIYLMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKL 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 239 GGYGMMRITTILNPLTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIA 318
Cdd:MTH00014  233 GGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIA 312
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 319 HGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGL 398
Cdd:MTH00014  313 HGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAI 392
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1197511452 399 NMLITATYSLYMLAMTQRGKSLYHMHNLNPSLTRENTLMSMHIF 442
Cdd:MTH00014  393 TSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLV 436
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
5-442 3.31e-103

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 315.00  E-value: 3.31e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452   5 IIPTIMLLPVTWYSANSMVWINITLHSLTISLMSLSFLNQTDSNSNNFSSTFFSDPLSSPLLALTMWLLPLTIMASQHHL 84
Cdd:MTH00205    2 SIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKVF 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  85 SKEpwERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVAL 164
Cdd:MTH00205   82 KSN--KNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 165 SFIQNHMGTLNLFMMTYWSQelpNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMM 244
Cdd:MTH00205  160 FFLNSLNFSLSMFFNFPLNF---SDFYLFLYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLI 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 245 RITTILNPLTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSS 324
Cdd:MTH00205  237 RITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSS 316
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 325 MLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITA 404
Cdd:MTH00205  317 GMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSG 396
                         410       420       430
                  ....*....|....*....|....*....|....*....
gi 1197511452 405 TYSLYMLAMTQRGK-SLYHMHNLNPSLtRENTLMSMHIF 442
Cdd:MTH00205  397 AYSLYLYSQSQHGKvSSQISSFLAISE-REYYILILHWF 434
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
59-411 6.64e-71

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 232.28  E-value: 6.64e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  59 DPLSSPLLALTMWLLPLTIMASqhhlSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGN 138
Cdd:COG1008    81 DGISLPLVLLTALLTPLAILAS----WNEIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 139 QtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPNSWSSNLMWmACIMAFMIKMPLYGLHLWLPK 218
Cdd:COG1008   157 E-RRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQLLLFL-AFFIAFAVKVPMFPFHTWLPD 234
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 219 AHVEAPIAGSMILAAILLKLGGYGMMRITTILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:COG1008   235 AHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 298 IVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIG 377
Cdd:COG1008   315 LLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVG 394
                         330       340       350
                  ....*....|....*....|....*....|....
gi 1197511452 378 ELFITMATFSWSNMTIILTGLNMLITATYSLYML 411
Cdd:COG1008   395 EFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
52-410 7.06e-69

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 226.86  E-value: 7.06e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  52 FSSTFFS-DPLSSPLLALTMWLLPLTIMASqhhlskepWERKKY----FLFTLISLQLFLIMTFTATELIMFYILFESTL 126
Cdd:MTH00217   71 FGPVVFAvDGISIFFLILTALLTPICILIS--------WNSIKFlikeFLLCLLVIEILLMGVFTILDLVGFYILFEGIL 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 127 IPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNlfMMTYWSQELPNSWSsNLMWMACIMAFMIK 206
Cdd:MTH00217  143 IPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTD--YQALCCLKIEKELQ-YFIFLGFFLSLAIK 219
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 207 MPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSL 285
Cdd:MTH00217  220 IPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEaSEYFSPLIQTLSLLAIIYGSLTTCRQVDLKRI 299
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 286 IAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLT 365
Cdd:MTH00217  300 IAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLA 379
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1197511452 366 NLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYM 410
Cdd:MTH00217  380 NASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYL 424
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
59-410 3.74e-66

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 220.07  E-value: 3.74e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  59 DPLSSPLLALTMWLLPLTIMASQHhlskEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGn 138
Cdd:PRK05846   81 DGISLLLVVLTALLTPLAVLASWE----EIKKRVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWG- 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 139 QTERLNAGLYFLFYTLIGSLPLLVALSFI----QNHMGTLNLfmmTYWSQELPNSWSSNLMWMACIMAFMIKMPLYGLHL 214
Cdd:PRK05846  156 GKNRIYAATKFFLYTLLGSLLMLVAIIYLvvvyYNATGTFDI---ADLLNLPLPPGVQYWLFLAFFIAFAVKMPMFPLHT 232
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 215 WLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSH 293
Cdd:PRK05846  233 WLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDaSHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 294 MALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSI 373
Cdd:PRK05846  313 MGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTS 392
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1197511452 374 NLIGELFITMATFSWSNMTIILTGLNMLITATYSLYM 410
Cdd:PRK05846  393 GFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWL 429
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
59-411 1.88e-65

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 217.89  E-value: 1.88e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  59 DPLSSPLLALTMWLLPLTIMASQHHLSKepweRKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGN 138
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 139 QTeRLNAGLYFLFYTLIGSLPLLVA---LSFIQNHMGTLNLFMmtywSQELPNSWSSnLMWMACIMAFMIKMPLYGLHLW 215
Cdd:TIGR01972 152 PN-RIYAAMKFFLYTLAGSLLMLLAilgLYFLGGGTFDLLELL----NLPLPFGVQT-WLFLAFFIAFAVKVPLFPLHTW 225
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 216 LPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNP-LTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294
Cdd:TIGR01972 226 LPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHM 305
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSIN 374
Cdd:TIGR01972 306 GFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSG 385
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1197511452 375 LIGELFITMATFSWSNMTIILTGLNMLITATYSLYML 411
Cdd:TIGR01972 386 FVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
56-410 2.35e-65

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 218.01  E-value: 2.35e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  56 FFSDPLSSPLLALTMWLLPLTIMASQH---HLSKEpwerkkyFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLII 132
Cdd:MTH00204   79 FAVDGVSLFFILLTTLLIPICILISWKsikFLFKE-------FLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLL 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 133 ITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTywSQELPNSwSSNLMWMACIMAFMIKMPLYGL 212
Cdd:MTH00204  152 IGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQILL--NIKLPLS-IQKWLLVGFFLSLAVKIPQIPF 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 213 HLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNPLTKFMAYPF-LMLCLWGMIMTSLICLRQTDLKSLIAYSSV 291
Cdd:MTH00204  229 HIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPLiVMLSVIAVIYGSLTTCRQVDFKRLIAYSSV 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPP 371
Cdd:MTH00204  309 AHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPL 388
                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1197511452 372 SINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYM 410
Cdd:MTH00204  389 SCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYL 427
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
112-398 3.79e-63

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 206.01  E-value: 3.79e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 112 ATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPNSWS 191
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 192 SNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNPLTKFMAYPFLMLCLWGMIM 271
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 272 TSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANS-NYERIHNRTMLLARGLQS 350
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDYGGLAK 240
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1197511452 351 LLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGL 398
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGV 288
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
56-409 1.05e-58

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 200.92  E-value: 1.05e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  56 FFSDPLSSPLLALTMWLLPLTIMASQHHLSKepweRKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITR 135
Cdd:MTH00226   98 FAVDGISIYFIILTGFIVPCSILISWHSVKY----LTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGI 173
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 136 WGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYwSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLW 215
Cdd:MTH00226  174 WGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLAS-CSHVVSEQTQKWIFLGIFLAMAVKIPIFPFHIW 252
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 216 LPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNPL-TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHM 294
Cdd:MTH00226  253 LPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLgAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHM 332
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSIN 374
Cdd:MTH00226  333 GLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGN 412
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1197511452 375 LIGELFITMATFSWSNMTIILTGLNMLITATYSLY 409
Cdd:MTH00226  413 FIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
96-442 1.57e-44

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 160.46  E-value: 1.57e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  96 LFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSfiqnhmgtLN 175
Cdd:MTH00094   65 LILSNLLILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYL--------KN 136
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 176 LFMMTYWSQELPNSWSSNLMwmaCIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRittILNPLTK 255
Cdd:MTH00094  137 FFFFSLCYFDFFLSWEMFFI---LSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLR---ILGSLNF 210
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 256 FMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYE 335
Cdd:MTH00094  211 VYNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYH 290
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 336 RIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNMLITATYSLYMLAMTQ 415
Cdd:MTH00094  291 ISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSF 370
                         330       340
                  ....*....|....*....|....*..
gi 1197511452 416 RGKSLYHMHNLNPSLTRENTLMSMHIF 442
Cdd:MTH00094  371 MGKKFSNFNNFNVGLSLPLVFMMFNMF 397
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
52-415 3.96e-40

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 149.14  E-value: 3.96e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  52 FSSTFFSDPLSSPLLALTMWLLPLTIMASQHHLSkepWERKKYFLFTLISLQLF-LIMTFTATELIMFYILFESTLIPTL 130
Cdd:COG0651    68 FGIVLVADRLSALFLLLTALVALAVLLYSIGYMR---HERRGRRFYPLFLLLLAgMNGAFLTGDLFNLFVFFEVMLLASY 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 131 IIITRWGNQtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPNSWSSnLMWMACIMAFMIKMPLY 210
Cdd:COG0651   145 GLVALGGTK-EALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELDPGLLL-AAFALLLVGFGIKAALF 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 211 GLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNP--LTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAY 288
Cdd:COG0651   223 PLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGadPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAY 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 289 SSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLA 368
Cdd:COG0651   303 SSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAG 382
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 1197511452 369 LPPSINLIGELFITMATFSWSNMTIILTGL-NMLITATYSLYMLAMTQ 415
Cdd:COG0651   383 LPPLSGFVSKWLLLQAALEAGAWLLAAVLLlSSLLTLAYFVRIFGRAQ 430
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
59-411 7.05e-38

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 144.40  E-value: 7.05e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  59 DPLSSPLLALTMWLLPLTIMASQHhLSKEPwerkKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGN 138
Cdd:PRK12561   58 DGLSMPLVLLSGLITTLSIFASWK-VTRKP----RLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGG 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 139 QtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPNSWSSnLMWMACIMAFMIKMPLYGLHLWLPK 218
Cdd:PRK12561  133 Q-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLAELGAKSYPLALEL-LLYAGFLIAFGVKLPIFPLHTWLPD 210
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 219 AHVEAPIAGSMILAAILLKLGGYGMMRITTILNPLTKFMAYPFLM-LCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:PRK12561  211 AHGEASAPVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPALAiLGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFV 290
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 298 IVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIG 377
Cdd:PRK12561  291 LLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVS 370
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1197511452 378 EL--FITMA-----TFSWSNMTIILTGLNMLITATYSLYML 411
Cdd:PRK12561  371 ELtvFLGITssdvySSTFRTITILLAAVGLILTPIYLLSML 411
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
59-416 6.72e-35

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 135.98  E-value: 6.72e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  59 DPLSSPLLALTMWLLPLTIMASQHHLskepwERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGN 138
Cdd:PRK06473   78 DGLSLPLLVLNSLLTLIAIYSSDESI-----QRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGG 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 139 QtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPNSwSSNLMWMACIMAFMIKMPLYGLHLWLPK 218
Cdd:PRK06473  153 Q-RRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHTLPLS-TQLLLLAPILVGFGIKIPLVPFHTWLPD 230
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 219 AHVEAPIAGSMILAAILLKLGGYGMMRITTILNPLTKFMAYPFL-MLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV 297
Cdd:PRK06473  231 AHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLaTWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 298 IVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGL---QSLLPLMSTWWLLANLTNLALPPSIN 374
Cdd:PRK06473  311 LLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERGLPITGSLMILGVMASAGIPGMVG 390
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1197511452 375 LIGELFITMATFswsNMTIILTGLNMLITATYSLYMLAMTQR 416
Cdd:PRK06473  391 FIAEFLVFRGSF---PIFPVQTLLCMIGTGLTAVYFLLLVNR 429
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
58-411 2.28e-34

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 134.83  E-value: 2.28e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  58 SDPLSSPLLALTMWLLPLTIMASqhhlskepWE---RKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIIT 134
Cdd:PRK02546   85 ADGLSMPLILLTGFITTLAVLAA--------WPvtfKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLA 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 135 RWGNQtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPNSWSsNLMWMACIMAFMIKMPLYGLHL 214
Cdd:PRK02546  157 IWGGK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTALAAKDFGLGFQ-LLCYAGLLIAYGVKLPIVPLHT 234
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 215 WLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNPLTKFMAYPFL-MLCLWGMIMTSLICLRQTDLKSLIAYSSVSH 293
Cdd:PRK02546  235 WLPDAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLiVLGVVNIIYAALTSFAQRNLKRKIAYSSISH 314
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 294 MALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSI 373
Cdd:PRK02546  315 MGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMS 394
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1197511452 374 NLIGEL--FITMATFSWSNMT-----IILTGLNMLITATYSLYML 411
Cdd:PRK02546  395 GFVAELmvFVGFATSDAYTLPfrvvvVFLAAVGVILTPIYLLSML 439
ndhD CHL00011
NADH dehydrogenase subunit 4
107-411 1.87e-30

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 123.13  E-value: 1.87e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 107 IMTFTATELIMFYILFESTLIPTLIIITRWGNQtERLNAGLYFLFYTLIGSLPLLVA---LSFIQNHMGTLNlfMMTYWS 183
Cdd:CHL00011  126 IGLFSSRDLLLFFIMWELELIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGvlgMGLYGSNEPTLN--FETLAN 202
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 184 QELPNSWSSnLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNPLTKFMAYPFLM 263
Cdd:CHL00011  203 QSYPVALEI-LFYIGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLV 281
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 264 LC-LWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIhnRTM 342
Cdd:CHL00011  282 IVgAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRI--RLV 359
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1197511452 343 LLAR--GLQSLLPLMSTWWLLANLTNLALPPSINLIGEL-----FITMATFSWSNMTII--LTGLNMLITATYSLYML 411
Cdd:CHL00011  360 YLDEmgGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELivffgIITSQKYLLMPKILItfVMAIGMILTPIYLLSML 437
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
59-418 1.28e-28

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 117.89  E-value: 1.28e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  59 DPLSSPLLALTMWLLPLTIMASQHHLskepwERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGN 138
Cdd:PRK07363   78 DGLSLPLLVLNSLLTWIAIYSIGENT-----ERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGG 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 139 QtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPNSwSSNLMWMACIMAFMIKMPLYGLHLWLPK 218
Cdd:PRK07363  153 E-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDYDAISTQNLSLN-TQLILLTGLLLGFGIKIPLVPLHTWLPD 230
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 219 AHVEAPIAGSMILAAILLKLGGYGMMRITTILNPLTKFMAYPflMLCLWGMIMT---SLICLRQTDLKSLIAYSSVSHMA 295
Cdd:PRK07363  231 AYTEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGTISViygALSAIAQKDIKRMVAYSSIGHMG 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 296 LVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSL---LPLMSTWWLLANLTNLALPPS 372
Cdd:PRK07363  309 YILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPirgLPLTSALLVLAGMASAGIPGL 388
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1197511452 373 INLIGELFITMATFSWSNMTIILTGLNMLITATYSLYMLAMTQRGK 418
Cdd:PRK07363  389 VGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFGR 434
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
55-406 2.66e-24

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 105.35  E-value: 2.66e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  55 TFFSDPLSSPLLALTMWLLPLTIMASQHhlSKEPWERKKYFLFtLISLQLFLIMTFTATeLIMFYILFESTLIPTLIIIT 134
Cdd:PRK08375   72 ELRADSLSALFLLVTSILAIAALLYAIG--YGEHRQTRFYALF-LLLLAGLLGALLTAD-LFNLFVFLEIMSLSSYALVA 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 135 RWGNQtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMtywSQELPNSWSSNLMWMACIMAFMIKMPLYGLHL 214
Cdd:PRK08375  148 MGGDR-RALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADL---AGALAENPTVVTAFGFVLLALALKAAVFPLHT 223
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 215 WLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNPLTKF----MAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSS 290
Cdd:PRK08375  224 WLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRfalgLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYST 303
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 291 VSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALP 370
Cdd:PRK08375  304 VSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVP 383
                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1197511452 371 PSINLIGELFITMATFS---WSNMTIILTGlnMLITATY 406
Cdd:PRK08375  384 PTSGFVSKWYLVVGAVEagqWLVLAVLLAS--SLLALLY 420
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
59-408 2.64e-21

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 96.58  E-value: 2.64e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  59 DPLSSPLLALTMWLLPLTIMASQHHLSKEpwERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGN 138
Cdd:PRK12667   81 DLLGALLGLLTALVMFLILIYSYWYLEHE--SGPEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRD 158
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 139 QTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPNS----------WSSNLMWMACIMAFMIKMP 208
Cdd:PRK12667  159 RGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNMADLSAKIRGLSFPltgglagnppLALGVALALALWAFTIKAA 238
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 209 LYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRI-------TTILNPLTKFMAYPFLMLCLWGMIMTSLICLRQTD 281
Cdd:PRK12667  239 IFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQKD 318
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 282 LKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLL 361
Cdd:PRK12667  319 VKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLI 398
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1197511452 362 ANLTNLALPPSINLIGELFITMATFSWSnmtIILTGLNMLITATYSL 408
Cdd:PRK12667  399 GALSLVGIPPLNGFFSKLLLFNALLESG---FYLPALVLLIASAISL 442
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-109 4.74e-21

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 87.97  E-value: 4.74e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452   1 MLKIIIPTIMLLPVTWYSANSMVWINITLHSLTISLMSLSFLNQTDSNSNNFSSTFFS-DPLSSPLLALTMWLLPLTIMA 79
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLWTTSTLYSLLLALLSLLLLNNPSNFSWSNLSYFLGiDSLSYPLIILSCWLLPLMILA 80
                          90       100       110
                  ....*....|....*....|....*....|
gi 1197511452  80 SQHHLSKEPWERKKYFLFTLISLQLFLIMT 109
Cdd:pfam01059  81 SQKHLKSEPNNRQRTFIFLLILLQLFLILT 110
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
94-327 5.48e-16

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 80.43  E-value: 5.48e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  94 YFLFTLISLqLFLIMTFTATELIMFYILFESTLIPTLIIITRwGNQTERLNAGLYFLFyTLIGSLPLLVALSFIQNHMGT 173
Cdd:PRK08668  100 FNMFALMSL-AGVLGVFLANDLLTLYIFWEIMTFSSFMMVPM-GKKESRKASLKYFVL-SAIGAYAMLYAIFLIYAKTGT 176
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 174 LNLFMMtywSQELPNSWSSNLMWMAC--IMAFMI-KMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTIL 250
Cdd:PRK08668  177 FDFADI---SQGLINDTSTGFALIVFlfLLAFGVaKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVL 253
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 251 nPLTKFMA------------YPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIA 318
Cdd:PRK08668  254 -PGTKLFSefgtyrgvplfnYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFN 332

                  ....*....
gi 1197511452 319 HGLTSSMLF 327
Cdd:PRK08668  333 HALFKGLFF 341
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
206-398 5.66e-16

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 79.97  E-value: 5.66e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 206 KMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTIL--NPLTKFMAYPFLMLCLWGMIMTSLICLRQTDLK 283
Cdd:PRK06458  227 KVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIdaAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIK 306
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 284 SLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLAN 363
Cdd:PRK06458  307 RLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGA 386
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1197511452 364 LTNLALPPSINLIGELFITMATFS---WSNMTIILTGL 398
Cdd:PRK06458  387 LAIAGMPPFGVFISEFLILTAGLArgpLLIAILLLLLL 424
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
96-395 3.50e-15

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 77.27  E-value: 3.50e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  96 LFTLISLqLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLN 175
Cdd:MTH00062   75 FFLFLSL-IFSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFN 153
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 176 LFMmtyWSQELPNSWSSNlmWMACIMaFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNPLTK 255
Cdd:MTH00062  154 FSD---WGSDDSVSLIVY--YVLSFM-FITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGSF 227
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 256 FMaypFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMaLVIVAILIQTPWSFMGATALM-IAHGLTSSMLFCLANSNY 334
Cdd:MTH00062  228 LG---YLFLCCLFSVFFLITACSELDGKRWLAFLSLSHI-LVPVLGLFVGDWSSINLSFFYcLGHGLSAGLVFLLLWCFY 303
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1197511452 335 ERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIIL 395
Cdd:MTH00062  304 EVSGSRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYLLFW 364
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
108-327 1.21e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 75.78  E-value: 1.21e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 108 MTFTATELIMFYILFESTLIPTLIIITRwGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELP 187
Cdd:PRK12665  126 NAFLAGDLFNLYVGFEILLVASYVLLTL-GATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLAVRLDELP 204
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 188 NSWSSNLMWMAcIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNPLTKFMAypFLMLC-L 266
Cdd:PRK12665  205 SGTRTALFAVL-LVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLFPGGGLDT--LLMVVaL 281
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1197511452 267 WGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLF 327
Cdd:PRK12665  282 LTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLF 342
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
94-327 5.03e-14

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 74.02  E-value: 5.03e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  94 YFLFTLisLQLFLIMTFTATELIMFYILFE-STLIPTLIIITRwgNQTERLNAGLYFLF-------YTLIGsLPLLVALS 165
Cdd:PRK08676  105 YLGFNL--LLSVITFAFFSDNLALFWIFAElTTVFSAMLIAIL--SARENIDAALKYIFiastamiFAFIG-LIFLFSLT 179
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 166 FIQNHMGTLNLFMMTYWSQELPNSWSSnLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMR 245
Cdd:PRK08676  180 RQALGTGTLNWTELAAHASLLSPSVLG-ASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILR 258
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 246 ITTILNPLTKFMAYPFLMLCLwGMIMTSLIC---LRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLT 322
Cdd:PRK08676  259 LSALLRQSGAAEQFSNVLIGL-GIFSIAVAAfsmLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLV 337

                  ....*
gi 1197511452 323 SSMLF 327
Cdd:PRK08676  338 KSGLF 342
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
52-386 1.83e-13

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 72.46  E-value: 1.83e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  52 FSSTFFSDPLSSPLLALTMWLLPLTIMASQHHLSKEPWERKKYFLFTLISLQLF-LIMTFTATELIMFYILFESTLIPTL 130
Cdd:PRK08667   69 LDITFHIDRLAAFFIILIGLVSLCVAIYSLGYNEHMSSNERANLLSALTALFILsMLGVVASANTFSFLFFWEIMALSSF 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 131 IIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPnswssnLMWMACIMAFMIKMPLY 210
Cdd:PRK08667  149 FLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILS------LVFLLLFLGFGIKAGII 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 211 GLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRIttILNPLTKFMAYPFLMLCLwGMIMTSL---ICLRQTDLKSLIA 287
Cdd:PRK08667  223 PFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRF--LMDVLSPELWWGVLILLA-GSISALLgviYALKEHDLKGLLA 299
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 288 YSSVSHMALVIVAILIQTPWSFMGATALM-----------IAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMS 356
Cdd:PRK08667  300 YSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTS 379
                         330       340       350
                  ....*....|....*....|....*....|
gi 1197511452 357 TWWLLANLTNLALPPSINLIGELFITMATF 386
Cdd:PRK08667  380 ALFLVGAVSIAALPPFNGFASELLLYESFF 409
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
52-398 1.60e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 69.21  E-value: 1.60e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  52 FSSTFFSDPLSSPLLALTMWLLPLTIMASQHHLSKEpweRKKYFLFTLIslqLFLIM----TFTATELIMFYILFESTLI 127
Cdd:PRK07691   69 FGIVFVADMFAALLVLTSSIITFLVILYSFQTIGIE---RERYYYYPSV---LFMLAgvngAFLTGDIFNLFVFFEVMLM 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 128 PTLIIITRWGNQTErLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPNSWSS--NLMWMACIMAFMI 205
Cdd:PRK07691  143 ASYVLIVIGGTKIQ-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMADISVKIAELSAGQTGliTVVAILFLFVFAT 221
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 206 KMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRI-TTILNPLTKFMAYPFLMLCLWGMIMTSLICLRQTDLKS 284
Cdd:PRK07691  222 KAGLFPLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTfTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKK 301
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 285 LIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANL 364
Cdd:PRK07691  302 IIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLGWMFFIAAL 381
                         330       340       350
                  ....*....|....*....|....*....|....
gi 1197511452 365 TNLALPPSINLIGELFITMATFSWSNMTIILTGL 398
Cdd:PRK07691  382 SLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVL 415
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
6-338 2.89e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 68.44  E-value: 2.89e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452   6 IPTIMLLPVTWYSANSMVWINITLHSLTISLMSLSFLNQTDsnsnNFSSTFFSDPLSSPLLALTMWLLPLTIMASqhhls 85
Cdd:PRK07234   17 FAIYLLPKLDRNLALGMAIVSAVYALGLVASMVPLELTLLD----NFGVTLRADALSGYFILTNALVTLAVIFYC----- 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  86 kepWERKK--YFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITrWGNQTERLNAGLYFLFYTLIGSLPLL-- 161
Cdd:PRK07234   88 ---WESAKtrFFYAQLLILHGSVNAAFVCADLISLYVALEVLSIATFLLVA-YPRTDRAIWVGLRYLFYSNVAMLFYLig 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 162 VALSFIQNHmgtlnlfmmTYWSQELPNSWSSNLMWMAciMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGY 241
Cdd:PRK07234  164 AVLVYQANG---------TFAFSGLATADPEAFALIA--LGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVF 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 242 GMMRITTILNPLTKFMAYPFLMLCLWGmimtSLICLRQTDLKSLIAYSSVSHMALVIVAILIqtpwsfmgATALMIAHGL 321
Cdd:PRK07234  233 PLVRCALDVPGLDLIVRIFGVGTALLG----VLFALLEKDLKRMLAFSTISQLGFILAAPLV--------GGLYALAHGL 300
                         330
                  ....*....|....*..
gi 1197511452 322 TSSMLFCLANSNYERIH 338
Cdd:PRK07234  301 VKSTLFLCAGALPSRNF 317
PRK12650 PRK12650
DUF4040 family protein;
66-330 4.51e-12

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 68.53  E-value: 4.51e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  66 LALTMWLLPLTIMA-----SQHHLSKEPWERKKYFLFTLISLQLFLIMTftATELIMFYILFESTLIPTLIIITRWGNQT 140
Cdd:PRK12650   80 LSLFFALLALVIGAvvfiySARYLPRKKGNTSFYLLMTAFMAAMLLLVL--ADDVVVLFVAWELVSLASFFLIARSGSGG 157
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 141 ErlNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMM---TYWSQelpNSWSSNLMWMACIMAFMIKMPLYGLHLWLP 217
Cdd:PRK12650  158 E--AGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGIlhsDVWAE---KPGLTTVVAVLIAVAAFTKSAQFPFHFWLP 232
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 218 KAHVEAPIAGSMILAAILLKLGGYGMMRITTILNPLTKFMaypfLMLCLWGM---IMTSLICLRQTDLKSLIAYSSVSHM 294
Cdd:PRK12650  233 EAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVAVWN----WLLIIVGMitaLMGAVFAVQKTDLKKLTAYSTVSQL 308
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1197511452 295 ALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLA 330
Cdd:PRK12650  309 GWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLI 344
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
104-387 7.04e-12

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 67.10  E-value: 7.04e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 104 LFLIMTFTATELIM------FYILFESTLIpTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLF 177
Cdd:PRK08377  113 LFLLLMLGATGMIAtgdifnLFVFMEITAI-TAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMA 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 178 MMTYWSQELpNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNPLTKFM 257
Cdd:PRK08377  192 HIAQLAGTI-DPTVAQVGLALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWS 270
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 258 AYPFLMLCLWGM--IMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYE 335
Cdd:PRK08377  271 SVLKLVIIMATLtvFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGI 350
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1197511452 336 RIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIGELFITMATFS 387
Cdd:PRK08377  351 TLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLS 402
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
9-323 1.86e-11

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 65.91  E-value: 1.86e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452   9 IMLLPVTWYSANSMVWINITLHSLTISLMSLsFLNQTDSNSNNFSSTFFSDPLSSPLLALTMWLLPLTIMASQHHLSKEP 88
Cdd:COG1007    20 LLLLDLFLPRRSRRLLAGLALLGLLLALALL-LLALGGGTGTAFGGMFVVDGFALFFKLLILLAALLVLLLSRDYLERRG 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  89 WERKKYFLFTLISLqLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGL-YFLFYTLIGSLpLLVALSFI 167
Cdd:COG1007    99 LLRGEFYALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAFRRDDRRSSEAALkYFLLGALSSGF-LLYGISLL 176
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 168 QNHMGTLNLFMMTYWSQELPNSwsSNLMWMACIM---AFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILlKLGGYGM- 243
Cdd:COG1007   177 YGATGSLNLAGIAAALAAGGAN--SPLLLLGLVLvlaGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAAl 253
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 244 MRI-TTILNPLTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLT 322
Cdd:COG1007   254 LRLlVEAFPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFM 333

                  .
gi 1197511452 323 S 323
Cdd:COG1007   334 N 334
PRK12646 PRK12646
DUF4040 family protein;
95-301 5.58e-11

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 64.78  E-value: 5.58e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  95 FLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTL 174
Cdd:PRK12646  112 FYFYLTLFMFSMIGIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTN 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 175 NLFMMTYWSQELPNS-WSSNLMWMACIMAFMiKMPLYGLHLWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITTILNp 252
Cdd:PRK12646  192 NITEILGQADHIKNHgLFIPMIFMFLLGAFT-KSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGIFLLFRFTPLLG- 268
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1197511452 253 LTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAI 301
Cdd:PRK12646  269 LSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMV 317
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
119-332 6.95e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 63.98  E-value: 6.95e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 119 YILFESTLIPTLIIITRwGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPNSWSSNLMWMA 198
Cdd:PRK12662  136 YVFLEISSISSYVLVAM-GRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLIIQDLPTNRAIQIGVLF 214
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 199 CIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRIT-TILNPLTKFMAYPF----LMLCLWGMIMTS 273
Cdd:PRK12662  215 IMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVyDVFKANFVFTTLPFnnvfMILAALAIVFGS 294
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1197511452 274 LICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANS 332
Cdd:PRK12662  295 VLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGS 353
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
111-401 2.69e-10

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 62.30  E-value: 2.69e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 111 TATELIMFYILFESTLIPTLIIITRWGNQtERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELpnsw 190
Cdd:PRK06525  131 YSSTLLGLLLFFEITGLCSWALISYYQSP-KALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSALSGLHGSL---- 205
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 191 sSNLMWMACIMAFMIKMPLYGLHLWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITTILNPLTKFMAYPFLMLCLWGM 269
Cdd:PRK06525  206 -KYLVFLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTL 283
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 270 IMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQ---TPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLAR 346
Cdd:PRK06525  284 LYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAilgSRLALEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLR 363
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1197511452 347 GLQSLLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGLNML 401
Cdd:PRK06525  364 GVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEYWILLPAMVL 418
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
52-332 4.56e-10

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 61.50  E-value: 4.56e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  52 FSSTFFSDPLSSpLLALTMWLLPLTIMAsqHHLSKEPWERKKYFLFTLISLQLF-LIMTFTATELIMFYILFESTLIPTL 130
Cdd:PRK12663   69 FGIQFTGDSLSA-LMVTTASFVATAIMA--YGFGDIEHSGRRYGFPPFILLLMAgVIGSFLTGDLFNLYVWFEVMLIASF 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 131 IIITrWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPNSWSSNLMWMACIMAFMIKMPLY 210
Cdd:PRK12663  146 VLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIAMRLNDMGDTATLTTIALLFLLAFGMKAALF 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 211 GLHlWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTILNPLTKFMAYPFL--MLCLwGMIMTSLICLRQTDLKSLIAY 288
Cdd:PRK12663  225 PFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPQERELLHPLLatMAAI-TMVIGALGALAYKDIRRIAGY 302
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1197511452 289 SSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANS 332
Cdd:PRK12663  303 QVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGS 346
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
51-392 2.21e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 59.44  E-value: 2.21e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  51 NFSSTFFSDPLSSPLLALTMWLLPLTIMASQHHLSKEPWERKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTL 130
Cdd:PRK06589   74 NYSIGLHLEPLGLIFLLLIGFLWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTA 153
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 131 IIITrWGNQTERLNAGLYFLFYTLIGSLPL-LVALSFIQNHMGTLNLFMMTYWSQElpNSWSSNLMWMACImafmIKMPL 209
Cdd:PRK06589  154 FLIG-HTRNNISLSGGYKYLKILMISALLLfLPAVILIYTKTGNLDFVSGGLFSKN--QSIILLLMFIYGI----AKTAI 226
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 210 YGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITTI---LNPLTKF--MAYPFLMLCLWGMIMTSLICLRQTDLKS 284
Cdd:PRK06589  227 FPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKILLYifgLSYLQRIfaEFNWLIFIPIVSIFYSSLKALKTDNIKK 306
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 285 LIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANL 364
Cdd:PRK06589  307 ILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSL 386
                         330       340
                  ....*....|....*....|....*...
gi 1197511452 365 TNLALPPSINLIGELFITMATFSWSNMT 392
Cdd:PRK06589  387 SLIGIPIFSGFISKFLILLAASEQNQPW 414
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
145-342 3.36e-09

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 59.13  E-value: 3.36e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 145 AGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTywSQELPNSWSSNLMWMAcIMAFMIKMPLYGLHLWLPKAHVEAP 224
Cdd:PRK06521  165 AGFLYLLMAHAGALAILLAFGLLARESGSYDFAAMR--AAHLSPFWASLVFLLA-LFGFGAKAGLVPLHVWLPRAHPAAP 241
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 225 IAGSMILAAILLKLGGYGMMRIT-TILNPLTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVA--- 300
Cdd:PRK06521  242 SHVSALMSGVMLKVAIYGILRVVfDLLGAPGWWWGVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGlgl 321
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1197511452 301 --ILIQTPWSFMGATALMIA------HGLTSSMLFCLANSNYERIHNRTM 342
Cdd:PRK06521  322 amVFIAYGMPLLAALALTAAlyhllnHALFKSLLFLGAGAVLHATGTRDM 371
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
115-404 3.55e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 59.16  E-value: 3.55e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 115 LIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPNS-WSSN 193
Cdd:PRK12647  117 LITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGGGLALLAGLILLGNVTGTYSLSELLASGDVIREHpLYLA 196
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 194 LMWMACIMAFMiKMPLYGLHLWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRittiLNPLTKFMAYPFLMLCLWG---M 269
Cdd:PRK12647  197 ILLLVLGGAFT-KSAQFPFHFWLPNA-MEAPTPVSAYLhSATMVKAGIYLLAR----LNPVLGGTPLWQTILPLFGgltM 270
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 270 IMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQ 349
Cdd:PRK12647  271 LTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLR 350
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1197511452 350 SLLPLMSTWWLLANLTNLALPPSINLIGELFITMATFSWSNMTIILTGL----NMLITA 404
Cdd:PRK12647  351 RAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTVAavlgNALMVA 409
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
75-353 6.02e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.18  E-value: 6.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  75 LTIMASQHHLSKEPWERKKYFLFTLISLQLFLIMTftATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTL 154
Cdd:PRK08376  105 LAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAI--TGDLFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGS 182
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 155 IGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPNSWSSNLMWMaCIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAI 234
Cdd:PRK08376  183 LASSMVLLGIALLYGQYGTLNMAYLAVKMSENPTVVAKIALAL-FIAGLAMKSGAVPVHMWLPDAYPAAPSSISAMLLVI 261
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 235 llKLGG-YGMMRIT-TILNPL--TKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVS---HMAL---VIVAILIQ 304
Cdd:PRK08376  262 --KQAGlYALARVLfSIYGPAinLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSqigYMLLglgVGLAALGD 339
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1197511452 305 TPWSFMGATAL------MIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLP 353
Cdd:PRK08376  340 PAMASYGEIALaggiyhIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMP 394
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
155-398 6.58e-09

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 57.91  E-value: 6.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 155 IGSLPLLVALSFIQNHMGTLNLFMMTYWSQELPnswSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAI 234
Cdd:PRK08042  145 LGTLLLAIACWLLWQRYGTLDLRLLDMRMQQLP---LGSDIWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTV 221
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 235 LLKLGGYGMMRITTILNPLTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALV-------IVAILIQTP- 306
Cdd:PRK08042  222 VMKIGLLGILTLSLLGGNAPLWWGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIIllglgagVTGIALEQPa 301
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 307 ---WSFMGATALMIAHGLTSSMLFCLANSNYERIHNRTMLLARGLQSLLPLMSTWWLLANLTNLALPPSINLIGELFITM 383
Cdd:PRK08042  302 liaLGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQ 381
                         250
                  ....*....|....*
gi 1197511452 384 ATFSWSNMTIILTGL 398
Cdd:PRK08042  382 SFFKLSNSGAFVARL 396
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
115-327 6.76e-09

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 57.85  E-value: 6.76e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 115 LIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLfmmTYWSQELPNSWSSNL 194
Cdd:COG1009   133 LLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNF---SELLAAAPTILSSPL 209
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 195 MWMACIMAF---MIKMPLYGLHLWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRittiLNPLtkFMAYPFLMLCL---- 266
Cdd:COG1009   210 LTLILLLLLlgaFGKSAQFPLHFWLPDA-MEGPTPVSALLhAATMVKAGVYLLAR----LSPL--FALSPVWLTVVaiig 282
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1197511452 267 -WGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQtpwSFMGATALMIAHGLTSSMLF 327
Cdd:COG1009   283 aITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLF 341
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
111-327 2.66e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 56.47  E-value: 2.66e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 111 TATELIMFYILFESTLIPTLIIItrwGNQTERLN---AGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLfmmtywSQELP 187
Cdd:PRK12644  124 TSDNLLLLYVFWELTTVLSFLLI---GHYAERAAsrrAALQALLVTTAGGLAMLVGIIILGQAAGTYRL------SELLA 194
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 188 NSWSSNLMWMA--CIMA-FMIKMPLYGLHLWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITTILNPLTkFMAYPFLM 263
Cdd:PRK12644  195 DPPTGPAVSVAvvLILVgALSKSAIVPFHFWLPGA-MAAPTPVSAYLhAAAMVKAGIYLVARLAPGFADVP-VWRPTVLV 272
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1197511452 264 LCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLF 327
Cdd:PRK12644  273 LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALF 336
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
102-327 3.49e-07

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 52.59  E-value: 3.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 102 LQLFL---IMTFTATELImfyilfestliptliiitrWGNQTER-LNAGL-YFLFYTLIGSLpLLVALSFIQNHMGTLnL 176
Cdd:PRK12668  116 LTLFVfweLMAFTSTFLV-------------------WARGTKAaVRAGFrYLLVHVLGGVL-LLAGILLHYAETGSF-A 174
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 177 FMMTYWSQELPNswssnlmWMACImAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRittilnpltkf 256
Cdd:PRK12668  175 FGAIAGLGGTAA-------WLILI-GFGVNAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALAR----------- 235
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1197511452 257 mAYPFLMLCLW-GMIMT---SLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLF 327
Cdd:PRK12668  236 -AFPGTELLIYiGAAMAvygVFFALLENDLRRLLSYHIVSQVGYMVAGIGIGTALAINGAVAHAFNHILYKGLLF 309
PRK12666 PRK12666
putative monovalent cation/H+ antiporter subunit D; Reviewed
137-330 7.11e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237166 [Multi-domain]  Cd Length: 528  Bit Score: 51.39  E-value: 7.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 137 GNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNlfmMTYWSQELPNSWSSN--LMWMACIM---AFMIKMPLYG 211
Cdd:PRK12666  152 GSGRARVRAGLHYVAINLVASSLFLIGVGLIYGVTGTLN---MADLAQRIAQLPAADraLLEAGAALllvVFLIKAAMWP 228
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 212 LHLWLPKAHVEA--PIAGsmiLAAILLKLGGYGMMRI-TTILNPLTKFMAYPFLMLCLWGMIMTSLI----CLRQTDLKS 284
Cdd:PRK12666  229 LNFWLPPAYAAAsaPVAA---LFAIMTKVGIYAILRLsTLLFGPEAGASAGFGQDWLLPGGLATLAFgaigVLAAQRLRR 305
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1197511452 285 LIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLA 330
Cdd:PRK12666  306 LAAYLVLVSSGTLLAAIGLGNPAATAAALYYLVHSTLAAAALFLLA 351
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
91-307 1.43e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 50.74  E-value: 1.43e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  91 RKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNH 170
Cdd:MTH00208  136 NKNAFFRLLIIFLLNMLILTSSNNLFLLFIGWEGVGFLSFLLISWWTTRNDANSSALQAVIYNRIGDIGIILFLSLSLIN 215
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 171 MGTLNLFMMTYWSQelPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAhVEAPIAGS-------MILAAILLklggygM 243
Cdd:MTH00208  216 FNSWNLNEILSLNN--SNSFLINILLFGILLAAAGKSAQFGLHPWLPAA-MEGPTPVSallhsstMVVAGVFL------L 286
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1197511452 244 MRITTILNPLTKFmaypfLMLCLWGMIMTSL----ICLRQTDLKSLIAYSSVSHMALVIVAILIQTPW 307
Cdd:MTH00208  287 IRTSPLISNSPWF-----LSLCLILGSLTALfaasTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPN 349
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
1-323 3.82e-06

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 49.05  E-value: 3.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452   1 MLKIIIPTIMLLPVTWYSANSMVWINITLHSLTISLMSLSFLNQTDSNSNNFSSTFFSDPLSSPLLALTMWLLPLTIMAS 80
Cdd:PRK05777   14 ELILLGAAVVLLLIDAFVRRHSRRATLAVLALLLALVALLFVLGAAGGGTAFGGMLVVDGFALFLKGLILLASLLALLLA 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  81 QHHLSKEpwERKKYFLFTLISLQLFLIMTFtATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPL 160
Cdd:PRK05777   94 RPYLEDR--GRGEFYLLVLFALLGMMVMVS-ANDLLTLFLGLELLSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFL 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 161 LVALSFIQNHMGTLNLFMMTYWSQElpNSWSSNLMWMACIM---AFMIKMPLYGLHLWLPKAHVEAPIAGSMILAAILlK 237
Cdd:PRK05777  171 LYGMSLLYGATGSLSFAGIAKALAD--GSGNSLLLLFGLVFllvGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-K 247
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 238 LGGYGM-MRI-TTILNPLTKFMAYPFLMLCLWGMIMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATAL 315
Cdd:PRK05777  248 IAAFAVlLRLlVVAFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFY 327

                  ....*...
gi 1197511452 316 MIAHGLTS 323
Cdd:PRK05777  328 LLAYLFMT 335
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
93-295 4.19e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 49.44  E-value: 4.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  93 KYFLFTLISLQLFLIMTFTATELIMFyILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMG 172
Cdd:PRK12649  112 RYYQYLLLFMGSMIGMVFSGNTIQLF-IFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITG 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 173 TLNLFMMTYWSQELPNSWSSNLMWMACIMAFM---IKMPLYGLHLWLPKAhVEAPIAGSMIL-AAILLKLGGYGMMRITT 248
Cdd:PRK12649  191 TYDIATILQDSELIENIKGHPLFLITLILIFIgaaAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHP 269
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1197511452 249 ILNPLTKFmaypFLMLCLWGMI---MTSLICLRQTDLKSLIAYSSVSHMA 295
Cdd:PRK12649  270 IFSGTEAW----FILVSGTGMItmvLAGFLAFRQTDIKAILAYSTISQLA 315
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
155-327 1.96e-04

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 43.75  E-value: 1.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 155 IGSLPLLVALSFIQNHMGTLNLFMMTYWSQELP-NSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAhVEAPIAGSMILAA 233
Cdd:PRK07390  182 VGDLLLLMGVVALSPLAGTLNFSDLAAWAATANlDPLTATLLGLALIAGPTGKCAQFPLHLWLDEA-MEGPNPASILRNS 260
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 234 ILLKLGGYGMMRITTI--LNPLTKFmaypfLMLCLWGM--IMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPwsf 309
Cdd:PRK07390  261 VVVATGAWVLIKLQPVlaLSPVALT-----VLIVIGTVtaIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQP--- 332
                         170
                  ....*....|....*...
gi 1197511452 310 MGATALMIAHGLTSSMLF 327
Cdd:PRK07390  333 DIALLLLLTHAIAKALLF 350
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
112-327 3.31e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 42.71  E-value: 3.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 112 ATELIMFYILFESTLIPTLIIITRWGNQTERLNAGL-YFLFYTLIGSLPLL-VALSFIQNHMGTLNLFMMTYWSQELPNS 189
Cdd:MTH00196   12 SSNWLSVYLAIELQTLSLFILIAQNRGSGYSAEAGLkYFVLGALSSGLFLFgCALLCGTTGGLHLSYINLVLNSGQSFSS 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 190 WSSNLMWMACIMAFMIKMPLYGLHLWLPKAHVEAPIAGSMILAaILLKLGgygMMRITTILNPLTKFmaypFLMLCLWGM 269
Cdd:MTH00196   92 VSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLA-IVPKLG---IFSILVSIGLNVNI----LLIGGLFSL 163
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1197511452 270 IMTSLICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLF 327
Cdd:MTH00196  164 FVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMSICVF 221
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
59-304 6.26e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 42.25  E-value: 6.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  59 DPLSSPLLALTMWLLPLTIMASQHHLSKEPweRKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGN 138
Cdd:MTH00032   79 DTLSVTMLLVISSISTLVHIYSTSYMSDDP--HVPRFLCYLSLFTFLMMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWTT 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 139 QTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLNLFMM---TYWSQELPNSWSSNLMWMACIMAFMI---------- 205
Cdd:MTH00032  157 RIQANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDFLTFnggSVGSGIMDRGYYGGGAYESPLAPFAIigillligci 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 206 -KMPLYGLHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRITtilnPLTKFMAYPFLMLCLWGMI---MTSLICLRQTD 281
Cdd:MTH00032  237 gKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSF----PLFEKAPLTLLIITIFGALtafFAATVGLVQND 312
                         250       260
                  ....*....|....*....|...
gi 1197511452 282 LKSLIAYSSVSHMALVIVAILIQ 304
Cdd:MTH00032  313 LKKVIAYSTCSQLGYMVLIIGIE 335
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
80-301 1.92e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 40.71  E-value: 1.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452  80 SQHHLSKEPweRKKYFLFTLISLQLFLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLP 159
Cdd:MTH00211   99 SLWYMSSEP--NINRFFKYLLLFLIFMLILVSANNLFQLFIGWEGVGIMSFLLISWWYGRSDANTAALQAVIYNRIGDIG 176
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 160 LLVALSFIQNHMGTLNLfmmtywSQELPNSWSSNLMWMACIMAFMIKMPLYGLHLWLPKAhVEAPIAGSMIL-AAILLKL 238
Cdd:MTH00211  177 LLLSMVWLLLNLNSWEI------SQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSA-MEGPTPVSALLhSSTMVVA 249
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1197511452 239 GGYGMMRITTILNPLTKFMAypfLMLCLWG--MIMTSLICLRQTDLKSLIAYSSVSHMALVIVAI 301
Cdd:MTH00211  250 GVFLLIRLSPLFQNNQLILG---AVLLLGAltMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTL 311
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
105-300 5.84e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.90  E-value: 5.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 105 FLIMTFTATELIMFYILFESTLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPLLVALSFIQNHMGTLN---LFMMty 181
Cdd:MTH00020  123 LMVVLVTSDNYLQLFIGWEGVGLCSYLLINFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFLLWDRFGSLDfssVFNM-- 200
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1197511452 182 wsqeLPNSWSSNLMWMaCIMAF---MIKMPLYGLHLWLPKAhVEAPIAGS-MILAAILLKLGGYGMMR------------ 245
Cdd:MTH00020  201 ----VVSAPSSDITLI-CLFLFigaVGKSAQLGLHTWLPDA-MEGPTPVSaLIHAATMVTAGVFLLIRssplfeqaplal 274
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1197511452 246 -ITTILNPLTKFMAypflmlclwgmimtSLICLRQTDLKSLIAYSSVSHMALVIVA 300
Cdd:MTH00020  275 iIVTIVGSLTVFFA--------------ATVGLVQNDLKKVIAYSTCSQLGYMVVA 316
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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