NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|119632101|gb|EAX11696|]
View 

hCG2014439, isoform CRA_b, partial [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
MOZART2 super family cl15169
Mitotic-spindle organizing gamma-tubulin ring associated; FAM128A and FAM128B proteins have ...
 60-147 2.08e-37

Mitotic-spindle organizing gamma-tubulin ring associated; FAM128A and FAM128B proteins have been re-named MOZART2A and B. The name MOZART is derived from letters of 'mitotic-spindle organizing proteins associated with a ring of gamma-tubulin'. This family operates as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBCGP nomenclature cannot be used for it. The exact function of MOZART2 is not clear.


The actual alignment was detected with superfamily member pfam12926:

Pssm-ID: 432879  Cd Length: 90  Bit Score: 123.80  E-value: 2.08e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119632101   60 GPGSAAPPGLEAARQKLALRRKKVLSTEEMELYELAQAAGGGIDPDVFKILVDLLKLNVAPLAVFQMLKSMCAGQRLA-S 138
Cdd:pfam12926   2 APGTSPSLVVSGNVQKYAIKKKKVLNAEEMELYELTQAAGIVIDQEVFKIIVDLLKMNVAPLAVFQTLKSMCAGQRVSeS 81


                  ....*....
gi 119632101  139 EPQDPAAVS 147
Cdd:pfam12926  82 SGGDTSSAS 90
 
Name Accession Description Interval E-value
MOZART2 pfam12926
Mitotic-spindle organizing gamma-tubulin ring associated; FAM128A and FAM128B proteins have ...
 60-147 2.08e-37

Mitotic-spindle organizing gamma-tubulin ring associated; FAM128A and FAM128B proteins have been re-named MOZART2A and B. The name MOZART is derived from letters of 'mitotic-spindle organizing proteins associated with a ring of gamma-tubulin'. This family operates as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBCGP nomenclature cannot be used for it. The exact function of MOZART2 is not clear.


Pssm-ID: 432879  Cd Length: 90  Bit Score: 123.80  E-value: 2.08e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119632101   60 GPGSAAPPGLEAARQKLALRRKKVLSTEEMELYELAQAAGGGIDPDVFKILVDLLKLNVAPLAVFQMLKSMCAGQRLA-S 138
Cdd:pfam12926   2 APGTSPSLVVSGNVQKYAIKKKKVLNAEEMELYELTQAAGIVIDQEVFKIIVDLLKMNVAPLAVFQTLKSMCAGQRVSeS 81


                  ....*....
gi 119632101  139 EPQDPAAVS 147
Cdd:pfam12926  82 SGGDTSSAS 90
 
Name Accession Description Interval E-value
MOZART2 pfam12926
Mitotic-spindle organizing gamma-tubulin ring associated; FAM128A and FAM128B proteins have ...
 60-147 2.08e-37

Mitotic-spindle organizing gamma-tubulin ring associated; FAM128A and FAM128B proteins have been re-named MOZART2A and B. The name MOZART is derived from letters of 'mitotic-spindle organizing proteins associated with a ring of gamma-tubulin'. This family operates as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBCGP nomenclature cannot be used for it. The exact function of MOZART2 is not clear.


Pssm-ID: 432879  Cd Length: 90  Bit Score: 123.80  E-value: 2.08e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119632101   60 GPGSAAPPGLEAARQKLALRRKKVLSTEEMELYELAQAAGGGIDPDVFKILVDLLKLNVAPLAVFQMLKSMCAGQRLA-S 138
Cdd:pfam12926   2 APGTSPSLVVSGNVQKYAIKKKKVLNAEEMELYELTQAAGIVIDQEVFKIIVDLLKMNVAPLAVFQTLKSMCAGQRVSeS 81


                  ....*....
gi 119632101  139 EPQDPAAVS 147
Cdd:pfam12926  82 SGGDTSSAS 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH