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Conserved domains on  [gi|119622534|gb|EAX02129|]
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unc-45 homolog A (C. elegans), isoform CRA_c [Homo sapiens]

Protein Classification

UNC45-central domain-containing protein( domain architecture ID 10569479)

UNC45-central domain-containing protein similar to Homo sapiens SWI5-dependent HO expression protein 4 (SHE4) required for mother cell-specific ho expression

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UNC45-central pfam11701
Myosin-binding striated muscle assembly central; The UNC-45 or small muscle protein 1 of C. ...
 363-505 2.50e-31

Myosin-binding striated muscle assembly central; The UNC-45 or small muscle protein 1 of C.elegans is expressed in two forms from different genomic positions in mammals, as a general tissue protein UNC-45a and a specific form Unc-45b expressed only in striated and skeletal muscle. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) domains towards their N-terminal, a UCS domain at the C-terminal that contains a number of Arm repeats pfam00514 and this central region of approximately 400 residues. Both the general form and the muscle form of UNC-45 function in myotube formation through cell fusion. Myofibril formation requires both GC and SM UNC-45, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organized myofibrils. The S. pombe Rng3p, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90. The exact function of this central region is not known.


:

Pssm-ID: 432011  Cd Length: 151  Bit Score: 119.95  E-value: 2.50e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  363 VTANSRMSASILLSKLfddlkCDAERENFHRLCENYIKSWFEGQGLAGKLRAIQTVSCLLQGPCDAGNRALELSGVMESV 442
Cdd:pfam11701  14 LPESVRSLALLILSKL-----LEAAKEEFEEKFSEFITSLLADGTNDDLIIAFSALAALFPVPPDVASALFLSEGFLESL 88

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 119622534  443 IALCAS-EQEEEQLVAVEALIHAAGKAKRASFITANGVSLLKDLYKcSEKDSIRIRALVGLCKL 505
Cdd:pfam11701  89 LPLVESkKSRKVELAALELLSAACIDKACREAISKNYVDWLEELLK-SSDDEIKALAAVVLAKL 151
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
28-125 1.12e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 79.96  E-value: 1.12e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  28 GNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 107
Cdd:COG4785   80 GVAYDSLGDYDLAIADFDQALELDP---DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGR 156

                         90
                 ....*....|....*...
gi 119622534 108 LDQAVLDLQRCVSLEPKN 125
Cdd:COG4785  157 YELAIADLEKALELDPND 174
 
Name Accession Description Interval E-value
UNC45-central pfam11701
Myosin-binding striated muscle assembly central; The UNC-45 or small muscle protein 1 of C. ...
 363-505 2.50e-31

Myosin-binding striated muscle assembly central; The UNC-45 or small muscle protein 1 of C.elegans is expressed in two forms from different genomic positions in mammals, as a general tissue protein UNC-45a and a specific form Unc-45b expressed only in striated and skeletal muscle. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) domains towards their N-terminal, a UCS domain at the C-terminal that contains a number of Arm repeats pfam00514 and this central region of approximately 400 residues. Both the general form and the muscle form of UNC-45 function in myotube formation through cell fusion. Myofibril formation requires both GC and SM UNC-45, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organized myofibrils. The S. pombe Rng3p, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90. The exact function of this central region is not known.


Pssm-ID: 432011  Cd Length: 151  Bit Score: 119.95  E-value: 2.50e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  363 VTANSRMSASILLSKLfddlkCDAERENFHRLCENYIKSWFEGQGLAGKLRAIQTVSCLLQGPCDAGNRALELSGVMESV 442
Cdd:pfam11701  14 LPESVRSLALLILSKL-----LEAAKEEFEEKFSEFITSLLADGTNDDLIIAFSALAALFPVPPDVASALFLSEGFLESL 88

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 119622534  443 IALCAS-EQEEEQLVAVEALIHAAGKAKRASFITANGVSLLKDLYKcSEKDSIRIRALVGLCKL 505
Cdd:pfam11701  89 LPLVESkKSRKVELAALELLSAACIDKACREAISKNYVDWLEELLK-SSDDEIKALAAVVLAKL 151
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
28-125 1.12e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 79.96  E-value: 1.12e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  28 GNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 107
Cdd:COG4785   80 GVAYDSLGDYDLAIADFDQALELDP---DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGR 156

                         90
                 ....*....|....*...
gi 119622534 108 LDQAVLDLQRCVSLEPKN 125
Cdd:COG4785  157 YELAIADLEKALELDPND 174
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 23-144 3.20e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 67.32  E-value: 3.20e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534   23 QLRKEGNELFKCGDYGGALAAYTQALGLDATPqdqaVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQAL 102
Cdd:TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP----VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 119622534  103 EKLGRLDQAVLDLQ-RCVSLEPKNKVFQEAL-RNIGGQIQEKVR 144
Cdd:TIGR00990 205 DGLGKYADALLDLTaSCIIDGFRNEQSAQAVeRLLKKFAESKAK 248
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 24-166 5.07e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 62.11  E-value: 5.07e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  24 LRKEGNELFKCGDYGGALAAYTQALGLDATpqdQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE 103
Cdd:PLN03088   5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 119622534 104 KLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIGGQIQEK----------VRYMSSTDAKVEQMFQILLDPEEK 166
Cdd:PLN03088  82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEekdlvqpvpsDLPSSVTAPPVEEADATPVVPPSK 154
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 26-91 1.23e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 41.17  E-value: 1.23e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 119622534   26 KEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 91
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 92-125 6.36e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 6.36e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 119622534    92 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 125
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
UNC45-central pfam11701
Myosin-binding striated muscle assembly central; The UNC-45 or small muscle protein 1 of C. ...
 363-505 2.50e-31

Myosin-binding striated muscle assembly central; The UNC-45 or small muscle protein 1 of C.elegans is expressed in two forms from different genomic positions in mammals, as a general tissue protein UNC-45a and a specific form Unc-45b expressed only in striated and skeletal muscle. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) domains towards their N-terminal, a UCS domain at the C-terminal that contains a number of Arm repeats pfam00514 and this central region of approximately 400 residues. Both the general form and the muscle form of UNC-45 function in myotube formation through cell fusion. Myofibril formation requires both GC and SM UNC-45, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organized myofibrils. The S. pombe Rng3p, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90. The exact function of this central region is not known.


Pssm-ID: 432011  Cd Length: 151  Bit Score: 119.95  E-value: 2.50e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  363 VTANSRMSASILLSKLfddlkCDAERENFHRLCENYIKSWFEGQGLAGKLRAIQTVSCLLQGPCDAGNRALELSGVMESV 442
Cdd:pfam11701  14 LPESVRSLALLILSKL-----LEAAKEEFEEKFSEFITSLLADGTNDDLIIAFSALAALFPVPPDVASALFLSEGFLESL 88

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 119622534  443 IALCAS-EQEEEQLVAVEALIHAAGKAKRASFITANGVSLLKDLYKcSEKDSIRIRALVGLCKL 505
Cdd:pfam11701  89 LPLVESkKSRKVELAALELLSAACIDKACREAISKNYVDWLEELLK-SSDDEIKALAAVVLAKL 151
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
28-125 1.12e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 79.96  E-value: 1.12e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  28 GNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 107
Cdd:COG4785   80 GVAYDSLGDYDLAIADFDQALELDP---DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGR 156

                         90
                 ....*....|....*...
gi 119622534 108 LDQAVLDLQRCVSLEPKN 125
Cdd:COG4785  157 YELAIADLEKALELDPND 174
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
28-136 1.49e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 77.35  E-value: 1.49e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  28 GNELFKCGDYGGALAAYTQALGLDatpQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 107
Cdd:COG0457   15 GLAYRRLGRYEEAIEDYEKALELD---PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGR 91

                         90       100
                 ....*....|....*....|....*....
gi 119622534 108 LDQAVLDLQRCVSLEPKNkvfQEALRNIG 136
Cdd:COG0457   92 YEEALEDYDKALELDPDD---AEALYNLG 117
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 14-141 6.14e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 79.27  E-value: 6.14e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  14 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 93
Cdd:COG3914   71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNP---DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE 147

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 119622534  94 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNkvfQEALRNIG------GQIQE 141
Cdd:COG3914  148 AYLNLGEALRRLGRLEEAIAALRRALELDPDN---AEALNNLGnalqdlGRLEE 198
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
28-216 1.31e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 74.66  E-value: 1.31e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  28 GNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 107
Cdd:COG0457   49 GLAYLRLGRYEEALADYEQALELDP---DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGR 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534 108 LDQAVLDLQRCVSLEPKNkvfQEALRNIG------GQIQEKVRYMSSTDAKVEQMFQILLDPEEKGTEKKQKASQNLVVL 181
Cdd:COG0457  126 YDEAIEAYERALELDPDD---ADALYNLGialeklGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLA 202

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 119622534 182 AREDAGAEKIFRSNGVQLLQRLLDMGETDLMLAAL 216
Cdd:COG0457  203 LEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 28-193 8.64e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 72.33  E-value: 8.64e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  28 GNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 107
Cdd:COG3914  119 GNLLLALGRLEEALAALRRALALNP---DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGR 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534 108 LDQAVLDLQRCVSLEPKN-KVFQEALRNiggqiqekvrYMSSTDAKVEQMFQILLdpeeKGTEKKQKASQNLVVLAREDA 186
Cdd:COG3914  196 LEEAIAAYRRALELDPDNaDAHSNLLFA----------LRQACDWEVYDRFEELL----AALARGPSELSPFALLYLPDD 261


                 ....*..
gi 119622534 187 GAEKIFR 193
Cdd:COG3914  262 DPAELLA 268
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
28-192 3.15e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 67.72  E-value: 3.15e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  28 GNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 107
Cdd:COG0457   83 GLALQALGRYEEALEDYDKALELDP---DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534 108 LDQAVLDLQRCVSLEPKNKVFQEALRNIGGQIQEKVRYMSSTDAKVEQMFQILLDPEEKGTEKKQKASQNLVVLAREDAG 187
Cdd:COG0457  160 YEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239


                 ....*
gi 119622534 188 AEKIF 192
Cdd:COG0457  240 LYQYR 244
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
35-124 8.08e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 62.11  E-value: 8.08e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  35 GDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAEtEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLD 114
Cdd:COG3063    6 GDLEEAEEYYEKALELDP---DNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81

                         90
                 ....*....|
gi 119622534 115 LQRCVSLEPK 124
Cdd:COG3063   82 LERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 31-123 2.38e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 63.06  E-value: 2.38e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  31 LFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQ 110
Cdd:COG5010   64 YNKLGDFEESLALLEQALQLDP---NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140

                         90
                 ....*....|...
gi 119622534 111 AVLDLQRCVSLEP 123
Cdd:COG5010  141 AKAALQRALGTSP 153
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 23-144 3.20e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 67.32  E-value: 3.20e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534   23 QLRKEGNELFKCGDYGGALAAYTQALGLDATPqdqaVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQAL 102
Cdd:TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP----VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 119622534  103 EKLGRLDQAVLDLQ-RCVSLEPKNKVFQEAL-RNIGGQIQEKVR 144
Cdd:TIGR00990 205 DGLGKYADALLDLTaSCIIDGFRNEQSAQAVeRLLKKFAESKAK 248
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 28-135 5.72e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.79  E-value: 5.72e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  28 GNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 107
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRLDP---DNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGD 100

                         90       100
                 ....*....|....*....|....*...
gi 119622534 108 LDQAVLDLQRCVSLEPKNKVFQEALRNI 135
Cdd:COG4235  101 YAEAIAAWQKLLALLPADAPARLLEASI 128
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 18-125 1.29e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 60.21  E-value: 1.29e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  18 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAtpqDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 97
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDP---DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77

                         90       100
                 ....*....|....*....|....*...
gi 119622534  98 RSQALEKLGRLDQAVLDLQRCVSLEPKN 125
Cdd:COG4783   78 LGLALLKAGDYDEALALLEKALKLDPEH 105
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 28-125 4.01e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 58.66  E-value: 4.01e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  28 GNELFKCGDYGGALAAYTQALGLDatpQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 107
Cdd:COG4783   45 GEILLQLGDLDEAIVLLHEALELD---PDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR 121

                         90
                 ....*....|....*...
gi 119622534 108 LDQAVLDLQRCVSLEPKN 125
Cdd:COG4783  122 PDEAIAALEKALELDPDD 139
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 24-166 5.07e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 62.11  E-value: 5.07e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  24 LRKEGNELFKCGDYGGALAAYTQALGLDATpqdQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE 103
Cdd:PLN03088   5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 119622534 104 KLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIGGQIQEK----------VRYMSSTDAKVEQMFQILLDPEEK 166
Cdd:PLN03088  82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEekdlvqpvpsDLPSSVTAPPVEEADATPVVPPSK 154
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
56-136 9.42e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.02  E-value: 9.42e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  56 DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNkvfQEALRNI 135
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD---AEALNNL 82


                 .
gi 119622534 136 G 136
Cdd:COG0457   83 G 83
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
36-136 5.46e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.54  E-value: 5.46e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  36 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDL 115
Cdd:COG4785   51 AALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDF 130

                         90       100
                 ....*....|....*....|.
gi 119622534 116 QRCVSLEPKNkvfQEALRNIG 136
Cdd:COG4785  131 DRALELDPDY---AYAYLNRG 148
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 28-125 6.11e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.12  E-value: 6.11e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  28 GNELFKCGDYGGALAAYTQALGLDatpQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 107
Cdd:COG2956  151 AELYLEQGDYDEAIEALEKALKLD---PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGD 227

                         90
                 ....*....|....*...
gi 119622534 108 LDQAVLDLQRCVSLEPKN 125
Cdd:COG2956  228 PEEALELLRKALELDPSD 245
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 35-135 7.00e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.74  E-value: 7.00e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  35 GDYGGALAAYTQALGLDatpQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLD 114
Cdd:COG2956  124 GDWEKAIEVLERLLKLG---PENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAA 200

                         90       100
                 ....*....|....*....|.
gi 119622534 115 LQRCVSLEPKNKVFQEALRNI 135
Cdd:COG2956  201 LERALEQDPDYLPALPRLAEL 221
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 30-131 8.13e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 51.53  E-value: 8.13e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  30 ELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK---ALYRRSQALEKLG 106
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELG 81

                         90       100
                 ....*....|....*....|....*
gi 119622534 107 RLDQAVLDLQRCVSLEPKNKVFQEA 131
Cdd:COG1729   82 DYDKARATLEELIKKYPDSEAAKEA 106
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 28-129 1.37e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 1.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  28 GNELFKCGDYGGALAAYTQALGLDatpQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 107
Cdd:COG2956   49 GNLYRRRGEYDRAIRIHQKLLERD---PDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGD 125

                         90       100
                 ....*....|....*....|..
gi 119622534 108 LDQAVLDLQRCVSLEPKNKVFQ 129
Cdd:COG2956  126 WEKAIEVLERLLKLGPENAHAY 147
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 57-136 1.56e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.35  E-value: 1.56e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  57 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNkvfQEALRNIG 136
Cdd:COG4783    3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE---PEARLNLG 79
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 40-136 7.42e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 49.23  E-value: 7.42e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  40 ALAAYTQALGLDatPQDqAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV 119
Cdd:COG4235    2 AIARLRQALAAN--PND-AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERAL 78

                         90
                 ....*....|....*..
gi 119622534 120 SLEPKNkvfQEALRNIG 136
Cdd:COG4235   79 ALDPDN---PEALYLLG 92
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 27-135 1.14e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.27  E-value: 1.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  27 EGNELFKCGDYGGALAAYTQALGLDatpQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLG 106
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELD---PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                         90       100
                 ....*....|....*....|....*....
gi 119622534 107 RLDQAVLDLQRCVSLEPKNKVFQEALRNI 135
Cdd:COG2956   91 LLDRAEELLEKLLELDPDDAEALRLLAEI 119
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 28-125 3.05e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.73  E-value: 3.05e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  28 GNELFKCGDYGGALAAYTQALGLDatPQDQAVLhRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 107
Cdd:COG2956   83 AQDYLKAGLLDRAEELLEKLLELD--PDDAEAL-RLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGD 159

                         90
                 ....*....|....*...
gi 119622534 108 LDQAVLDLQRCVSLEPKN 125
Cdd:COG2956  160 YDEAIEALEKALKLDPDC 177
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
67-136 3.33e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.32  E-value: 3.33e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  67 CHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAvLDLQRCVSLEPKNkvfQEALRNIG 136
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNN---AEALLNLA 66
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
28-117 4.74e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 48.76  E-value: 4.74e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  28 GNELFKCGDYGGALAAYTQALGLDatPQDQAVlHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR 107
Cdd:COG4785  114 GLAYLLLGDYDAALEDFDRALELD--PDYAYA-YLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDP 190

                         90
                 ....*....|
gi 119622534 108 lDQAVLDLQR 117
Cdd:COG4785  191 -EKALALLLE 199
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 40-136 5.25e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 5.25e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  40 ALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV 119
Cdd:COG5010   36 NTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKAL 115

                         90
                 ....*....|....*..
gi 119622534 120 SLEPKNkvfQEALRNIG 136
Cdd:COG5010  116 ALSPDN---PNAYSNLA 129
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 32-125 1.41e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 48.83  E-value: 1.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534   32 FKC--GDYGGALAAYTQALGLDATPQDQAVlhrNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLD 109
Cdd:TIGR00990 340 FKClkGKHLEALADLSKSIELDPRVTQSYI---KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA 416

                          90
                  ....*....|....*.
gi 119622534  110 QAVLDLQRCVSLEPKN 125
Cdd:TIGR00990 417 QAGKDYQKSIDLDPDF 432
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 40-145 9.70e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.14  E-value: 9.70e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  40 ALAAYTQALGLDATPQDQAVLHRNRAACHlKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV 119
Cdd:COG3914   61 ALAAGEAAAAAAALLLLAALLELAALLLQ-ALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRAL 139

                         90       100
                 ....*....|....*....|....*.
gi 119622534 120 SLEPKnkvFQEALRNIGGQIQEKVRY 145
Cdd:COG3914  140 ALNPD---FAEAYLNLGEALRRLGRL 162
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 26-91 1.23e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 41.17  E-value: 1.23e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 119622534   26 KEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 91
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
28-111 1.34e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 44.49  E-value: 1.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  28 GNELFKCGDYGGALAAYTQALGlDATPQDQAVLHRnRAACHLKLEDYDKAETEASKAIEKD----GGDVKALYRRsqALE 103
Cdd:COG4700   96 ADALLELGRYDEAIELYEEALT-GIFADDPHILLG-LAQALFELGRYAEALETLEKLIAKNpdfkSSDAHLLYAR--ALE 171


                 ....*...
gi 119622534 104 KLGRLDQA 111
Cdd:COG4700  172 ALGDLEAA 179
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 68-142 4.43e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.75  E-value: 4.43e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 119622534  68 HLKLEDYDKAETEASKAIEKDGGDV---KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIgGQIQEK 142
Cdd:COG1729    3 LLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKL-GLSYLE 79
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 76-165 7.45e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.37  E-value: 7.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  76 KAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNkvfQEALRNIGGqiqekVRYMSSTDAKVEQ 155
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN---ADALLDLAE-----ALLAAGDTEEAEE 72

                         90
                 ....*....|..
gi 119622534 156 MFQ--ILLDPEE 165
Cdd:COG4235   73 LLEraLALDPDN 84
TPR_1 pfam00515
Tetratricopeptide repeat;
92-125 1.09e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 1.09e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 119622534   92 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 125
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_11 pfam13414
TPR repeat;
28-71 1.80e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.07  E-value: 1.80e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 119622534   28 GNELFKCGDYGGALAAYTQALGLDatpQDQAVLHRNRAACHLKL 71
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLD---PDNPEAYYNLGLAYYKL 41
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 35-111 4.64e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 38.88  E-value: 4.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  35 GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL--------YRRSQALEKlG 106
Cdd:PRK02603  49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALnniaviyhKRGEKAEEA-G 127


                 ....*
gi 119622534 107 RLDQA 111
Cdd:PRK02603 128 DQDEA 132
TPR_8 pfam13181
Tetratricopeptide repeat;
92-124 5.68e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 35.07  E-value: 5.68e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 119622534   92 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 124
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 92-125 6.36e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 6.36e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 119622534    92 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 125
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
40-136 6.48e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.13  E-value: 6.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119622534  40 ALAAYTQALGLDATPQDQAVLHRNRA-ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 118
Cdd:COG4785   20 SKAAILLAALLFAAVLALAIALADLAlALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQA 99

                         90
                 ....*....|....*...
gi 119622534 119 VSLEPKNKvfqEALRNIG 136
Cdd:COG4785  100 LELDPDLA---EAYNNRG 114
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 92-124 9.03e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.81  E-value: 9.03e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 119622534   92 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 124
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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