|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
76-560 |
3.20e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 3.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 76 QSLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKES 155
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 156 NTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNEILElkcnLENKKEEVSR 235
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE----LEELAEELLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 236 LEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLK 315
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 316 EAGEANKAIQDHLLEVEQ--SKDQMEKEMLE------KIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAK 387
Cdd:COG1196 471 EAALLEAALAELLEELAEaaARLLLLLEAEAdyegflEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 388 IVKPGMKLTELYNAYVETQDQ-----LLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSV------ 456
Cdd:COG1196 551 IVVEDDEVAAAAIEYLKAAKAgratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGrtlvaa 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 457 KLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQH 536
Cdd:COG1196 631 RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
490 500
....*....|....*....|....
gi 119611610 537 LVSYRNIEELQQQNQRLLVALREL 560
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAER 734
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
76-349 |
1.12e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 76 QSLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKES 155
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 156 NTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELlalgREKGNEILELKCNLENKKEEVSR 235
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL----DELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 236 LEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLK 315
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
250 260 270
....*....|....*....|....*....|....*..
gi 119611610 316 EAGEANKAI---QDHLLEVEQSKDQMEKEMLEKIGRL 349
Cdd:TIGR02168 909 KRSELRRELeelREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
56-388 |
1.90e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 1.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 56 EIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKAlTEKNKELEiAQDRNIAIQSQFTRtKEELEAEKRDLIRTNERLS 135
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELERQLKSLERQAEK-AERYKELK-AELRELELALLVLR-LEELREELEELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 136 QELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREK 215
Cdd:TIGR02168 253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 216 gneilelkcnlENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADD 295
Cdd:TIGR02168 333 -----------DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 296 SEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKigrLEKELENANDLLSATKRKGAILSEEEL 375
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE---LQEELERLEEALEELREELEEAEQALD 478
|
330
....*....|...
gi 119611610 376 AAMSPTAAAVAKI 388
Cdd:TIGR02168 479 AAERELAQLQARL 491
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
213-553 |
3.07e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 3.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 213 REKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSA 292
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 293 ADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEkEMLEKIGRLEKELENANDLLSATKRKGAILsE 372
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE-QLKEELKALREALDELRAELTLLNEEAANL-R 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 373 EELAAMSPTAAAVAKivkpgmKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVA 452
Cdd:TIGR02168 824 ERLESLERRIAATER------RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 453 SLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLL-MELEEARGNHVIRD---EEVSSADISS 528
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYsLTLEEAEALENKIEddeEEARRRLKRL 977
|
330 340
....*....|....*....|....*
gi 119611610 529 SSEVISQHLVSYRNIEELQQQNQRL 553
Cdd:TIGR02168 978 ENKIKELGPVNLAAIEEYEELKERY 1002
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
27-361 |
1.42e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 1.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 27 KFLADQQSEID-GLKGRHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKlnnqlkALTEKNKELEIAQDR 105
Cdd:TIGR02168 216 KELKAELRELElALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL------EVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 106 NIAIQSQftrtKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQ 185
Cdd:TIGR02168 290 LYALANE----ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 186 EKELLHSQNTWLNTELktktdellalgREKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAK 265
Cdd:TIGR02168 366 ELEELESRLEELEEQL-----------ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 266 EQQASMEEKFHNElnahiklsnlyksAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEM--L 343
Cdd:TIGR02168 435 LKELQAELEELEE-------------ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQenL 501
|
330
....*....|....*...
gi 119611610 344 EKIGRLEKELENANDLLS 361
Cdd:TIGR02168 502 EGFSEGVKALLKNQSGLS 519
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
56-355 |
1.58e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 56 EIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLS 135
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 136 QELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSqntwLNTELKTKTDELLALGREK 215
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE----EAANLRERLESLERRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 216 GNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLL-------TKLKEAKEQQASMEEKFHNELNAHIKLSNL 288
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLnerasleEALALLRSELEELSEELRELESKRSELRRE 916
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 119611610 289 YKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEKELEN 355
Cdd:TIGR02168 917 LEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
49-324 |
6.15e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 6.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 49 ESEQQYFEIEK---RLSHSQERLVNETRECQSLRLELEK----LNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELE 121
Cdd:TIGR02168 688 ELEEKIAELEKalaELRKELEELEEELEQLRKELEELSRqisaLRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 122 AEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTEL 201
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 202 KTKTDELLALGRE---KGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFH-- 276
Cdd:TIGR02168 848 EELSEDIESLAAEieeLEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAql 927
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 119611610 277 ----NELNAHI-----KLSNLYKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAI 324
Cdd:TIGR02168 928 elrlEGLEVRIdnlqeRLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
30-520 |
3.25e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 3.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 30 ADQQSEIDGLKGRHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNK----ELEIAQDR 105
Cdd:PTZ00121 1286 AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEaaadEAEAAEEK 1365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 106 NIAIQSQFTRTKEELEAEKRDliRTNERLSQELEYLTEDVKRLNEKLK---------ESNTTKGELQLKLDELQASDVSV 176
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKK--AEEKKKADEAKKKAEEDKKKADELKkaaaakkkaDEAKKKAEEKKKADEAKKKAEEA 1443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 177 KYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKgNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVED 256
Cdd:PTZ00121 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA-KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 257 LLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKD 336
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 337 QMEKEMLEKIGRLEKELENANDLLSAtkrkgailsEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLEN 416
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEELKKA---------EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 417 KRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDL 496
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
|
490 500
....*....|....*....|....
gi 119611610 497 SQQIRVLLMELEEARGNHVIRDEE 520
Cdd:PTZ00121 1754 EEKKKIAHLKKEEEKKAEEIRKEK 1777
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
53-354 |
4.07e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 4.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 53 QYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLK-ALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLirtn 131
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSqELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL---- 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 132 ERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEK-ELLHSQNTWLNTELKTKTDELLA 210
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKlEEEVSRIEARLREIEQKLNRLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 211 LgrekgNEILELKcnLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKfHNELNAHIKLSNLYK 290
Cdd:TIGR02169 827 E-----KEYLEKE--IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR-LGDLKKERDELEAQL 898
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 119611610 291 SAAddsEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEK--IGRLEKELE 354
Cdd:TIGR02169 899 REL---ERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEElsLEDVQAELQ 961
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1-560 |
5.65e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 5.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 1 MAAVLQQVLERTELNKLPKSVQNKLEKFLADQQSEIDGLKGRHEKFKV---ESEQQYFEIEKRLSHSQERLVNETRECQS 77
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAeleELEAELEELESRLEELEEQLETLRSKVAQ 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 78 LRLELEKLNNQLKALTEKNKELEIAQDRNIAIQSQftRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNT 157
Cdd:TIGR02168 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEE--LLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 158 TKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKgnEILELKCNLENKKEEVsrle 237
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLS--ELISVDEGYEAAIEAA---- 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 238 eqmnglktsnehLQKHVEDLLTK-LKEAKEQQASMEEkfhnelNAHIKLSNLYKSAADDSEAKSNELTRAVEE------L 310
Cdd:TIGR02168 543 ------------LGGRLQAVVVEnLNAAKKAIAFLKQ------NELGRVTFLPLDSIKGTEIQGNDREILKNIegflgvA 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 311 HKLLKEAGEANKAIQDHLLEVeqskdqmekemlekigRLEKELENANDLLSATKRKGAILSEEelaamsptaaavAKIVK 390
Cdd:TIGR02168 605 KDLVKFDPKLRKALSYLLGGV----------------LVVDDLDNALELAKKLRPGYRIVTLD------------GDLVR 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 391 PGMKLTelyNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQE 470
Cdd:TIGR02168 657 PGGVIT---GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 471 DTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGnHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQN 550
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE-ELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812
|
570
....*....|
gi 119611610 551 QRLLVALREL 560
Cdd:TIGR02168 813 TLLNEEAANL 822
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
25-273 |
1.11e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 25 LEKFLADQQSEIDGLKGRHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQS----LRLELEKLNNQLKALTEKNKELE 100
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAeiasLERSIAEKERELEDAEERLAKLE 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 101 IAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYRE 180
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 181 KRLEQEKELLHSQNTWLNTELKTKTDELLALG---REKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDL 257
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEeekEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKL 488
|
250
....*....|....*.
gi 119611610 258 LTKLKEAKEQQASMEE 273
Cdd:TIGR02169 489 QRELAEAEAQARASEE 504
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
11-344 |
1.83e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.73 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 11 RTELNKLPKSVQNKLEKF---LADQQSEIDGLKGRHEKFKVESEQQYFEI---EKRLSHSQERLVNETRECQSLRLELEK 84
Cdd:TIGR00606 690 EAELQEFISDLQSKLRLApdkLKSTESELKKKEKRRDEMLGLAPGRQSIIdlkEKEIPELRNKLQKVNRDIQRLKNDIEE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 85 LNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEE--------LEAEKRDLIRTNERLSQELEYLTEDVKRLNEK----- 151
Cdd:TIGR00606 770 QETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVerkiaqqaAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKielnr 849
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 152 --LKESNTTKGELQLKLDELQASDVSVK---YREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNEILELKCNL 226
Cdd:TIGR00606 850 klIQDQQEQIQHLKSKTNELKSEKLQIGtnlQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI 929
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 227 ENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRA 306
Cdd:TIGR00606 930 SSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDT 1009
|
330 340 350
....*....|....*....|....*....|....*...
gi 119611610 307 VEELHKLLKEAGEANKaIQDHLLEVEQSKDQMEKEMLE 344
Cdd:TIGR00606 1010 QKIQERWLQDNLTLRK-RENELKEVEEELKQHLKEMGQ 1046
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
117-531 |
2.23e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 2.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 117 KEELEAEKRDLIRTNERLSQELEYLTEDVKRLN------EKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELL 190
Cdd:PTZ00121 1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQaaikaeEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK 1316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 191 HSQNTWLNTELKTKTDELLALGREKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQAS 270
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 271 MEEKFHNELNA-HIKLSNLYKSAADDSEAKSNELTRAVEELHKL--LKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIG 347
Cdd:PTZ00121 1397 KKKAEEDKKKAdELKKAAAAKKKADEAKKKAEEKKKADEAKKKAeeAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK 1476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 348 RLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYvETQDQLLLEKLENKRinkYLDEIV 427
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE-EAKKADEAKKAEEKK---KADELK 1552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 428 KEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMEL 507
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEK 1632
|
410 420
....*....|....*....|....
gi 119611610 508 EEARGNHVIRDEEVSSADISSSSE 531
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAE 1656
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
22-273 |
7.03e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 7.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 22 QNKLEKFLADQQSEIDGLKGR---HEKFKVESEQQYFEIEKRLSHSQ-ERLVNETRECQSLRLELEKLNNQL-KALTEKN 96
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEARieeLEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLREIeQKLNRLT 825
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 97 KELEIAQDRNIAIQSQftrtKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSV 176
Cdd:TIGR02169 826 LEKEYLEKEIQELQEQ----RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 177 KYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNEILELKC--NLENKKEEVSRLEEQMNGLKTSNEHLQKHV 254
Cdd:TIGR02169 902 ERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEelSLEDVQAELQRVEEEIRALEPVNMLAIQEY 981
|
250
....*....|....*....
gi 119611610 255 EDLLTKLKEAKEQQASMEE 273
Cdd:TIGR02169 982 EEVLKRLDELKEKRAKLEE 1000
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
22-352 |
7.40e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 7.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 22 QNKLEKFLADQQSEIDGLKGRHEKFKVESEQqyfeIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEi 101
Cdd:TIGR02169 697 LRRIENRLDELSQELSDASRKIGEIEKEIEQ----LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE- 771
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 102 aqdrniaiqSQFTRTKEELEAEKRDLIRTN-ERLSQELEYLTEDVKR-------LNEKLKESNTTKGELQLKLDELQASD 173
Cdd:TIGR02169 772 ---------EDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRiearlreIEQKLNRLTLEKEYLEKEIQELQEQR 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 174 VSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNeileLKCNLENKKEEVSRLEEQMNGLKTSNEHLQKH 253
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD----LKKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 254 VEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLyksaaDDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQ 333
Cdd:TIGR02169 919 LSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL-----EDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKE 993
|
330 340
....*....|....*....|..
gi 119611610 334 SKDQMEKE---MLEKIGRLEKE 352
Cdd:TIGR02169 994 KRAKLEEErkaILERIEEYEKK 1015
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
84-373 |
1.05e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.89 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 84 KLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQ 163
Cdd:pfam07888 35 RLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 164 LKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNEILE---LKCNLENKKEEVSRLEEQM 240
Cdd:pfam07888 115 EEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAErkqLQAKLQQTEEELRSLSKEF 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 241 NGLK-------TSNEHLQKHVEDLLTKLKEAKEQQASMEEkFHNELNAHIKLSNLYKSAAD----DSEAKSNELTRAVEE 309
Cdd:pfam07888 195 QELRnslaqrdTQVLQLQDTITTLTQKLTTAHRKEAENEA-LLEELRSLQERLNASERKVEglgeELSSMAAQRDRTQAE 273
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 119611610 310 LHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEKELENANDLLSATKRKGAILSEE 373
Cdd:pfam07888 274 LHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEE 337
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
29-217 |
1.13e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 29 LADQQSEIDGLKGRHEKFK-VESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEiaqdrnI 107
Cdd:COG4913 257 IRELAERYAAARERLAELEyLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELE------A 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 108 AIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLkesNTTKGELQLKLDELQASDVSVKYREKRLEQEK 187
Cdd:COG4913 331 QIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPL---PASAEEFAALRAEAAALLEALEEELEALEEAL 407
|
170 180 190
....*....|....*....|....*....|
gi 119611610 188 ELLHSQNTWLNTELKTKTDELLALGREKGN 217
Cdd:COG4913 408 AEAEAALRDLRRELRELEAEIASLERRKSN 437
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2-214 |
1.54e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 2 AAVLQQVLERTELNKLPKSVQNKL---EKFLADQQSEIDGLKGRHEkfkvESEQQYFEIEKRLSHSQERLVNETRECQSL 78
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIaelEKELAALKKEEKALLKQLA----ALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 79 RLELEKLNNQLKALTEKNKELEIAQDRNiaiqSQFTRTKEELEAEK-RDLIRTNERLSQELEYLTEDVKRLNEKLKESNT 157
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRL----GRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 119611610 158 TKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGRE 214
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
227-560 |
2.43e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 227 ENKKEEVSRLEEqmnglktSNEHLQKhVEDLLTKLKEAK---EQQASMEEKFHnELNAHIK------LSNLYKSAADDSE 297
Cdd:TIGR02168 172 ERRKETERKLER-------TRENLDR-LEDILNELERQLkslERQAEKAERYK-ELKAELRelelalLVLRLEELREELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 298 AKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEqskdqmekEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAA 377
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVS--------ELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 378 MSPTAAAVAKIVKPGMKLTELynayvetqdQLLLEKLENKrinkyLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVK 457
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDEL---------AEELAELEEK-----LEELKEELESLEAELEELEAELEELESRLEELEEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 458 LEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEARGNHVIRDEEVSSADissssevisqhl 537
Cdd:TIGR02168 381 LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE------------ 448
|
330 340
....*....|....*....|...
gi 119611610 538 vsyrnIEELQQQNQRLLVALREL 560
Cdd:TIGR02168 449 -----LEELQEELERLEEALEEL 466
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1-474 |
2.88e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 1 MAAVLQQVLERTELNKLPKSVQNKLEKFLADQQSEIDGLKGRHEKFkvesEQQYFEIEKRLSHSQERLVNETRECQSLRL 80
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL----AEELLEALRAAAELAAQLEELEEAEEALLE 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 81 ELEKLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKG 160
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 161 ELQLKLDELQASDVSVKYREKRLEQEK--ELLHSQNTWLNTELKTKTDELLALGREKGNEILE--LKCNLENKKEEVSRL 236
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAALLLAGLRGlaGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEvaAAAIEYLKAAKAGRA 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 237 E----EQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHK 312
Cdd:COG1196 575 TflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 313 LLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPG 392
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 393 MKLTELYNAYVETQDQLLLEKLEnkrinkyLDEIVKEVEAKAPILKRQR-----------EEYERAQKAVASLSVK---L 458
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELP-------EPPDLEELERELERLEREIealgpvnllaiEEYEELEERYDFLSEQredL 807
|
490
....*....|....*.
gi 119611610 459 EQAMKEIQRLQEDTDK 474
Cdd:COG1196 808 EEARETLEEAIEEIDR 823
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
24-490 |
3.22e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 3.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 24 KLEKFLADQQSEIDGLKGRHEKFKVESE---QQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELE 100
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEeaqAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 101 IAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYRE 180
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 181 KRLEQEKELLHSQNTwlntELKTKTDELLALGREKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTK 260
Cdd:COG1196 417 ERLEEELEELEEALA----ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 261 LKEAKEQQASMEEKFHNELNAHIK-------------------------------------------------------- 284
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLaglrglagavavligveaayeaaleaalaaalqnivveddevaaaaieylkaakag 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 285 ------LSNLYKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLE--VEQSKDQMEKEMLEKIGRLEKELENA 356
Cdd:COG1196 573 ratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGrtLVAARLEAALRRAVTLAGRLREVTLE 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 357 NDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKpgmKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPI 436
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAE---RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ 729
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 119611610 437 LKRQREEYERAQKAVASLsvkLEQAMKEIQRLQEDTDKANKQSSVLERDNRRME 490
Cdd:COG1196 730 LEAEREELLEELLEEEEL---LEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
49-273 |
5.42e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 5.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 49 ESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTEKNKELEiaqdrniaiqsqftRTKEELEAEKRDLI 128
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE--------------QELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 129 RTNERLSQELEYLTEDVKRLNEKL-KESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLhsqntwlnTELKTKTDE 207
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA--------EELRADLAE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 119611610 208 LLALGREKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEE 273
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
70-370 |
5.91e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 5.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 70 NETRECQSLRLELEKLnnqlkALTEKNKELEIAQDRNIAIQSQFtrtkEELEAEKRDLIRTNERLSQELEYLTEDVKRLN 149
Cdd:TIGR02169 208 EKAERYQALLKEKREY-----EGYELLKEKEALERQKEAIERQL----ASLEEELEKLTEEISELEKRLEEIEQLLEELN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 150 EKLKE-SNTTKGELQLKLDELQASDVSVKYREKRLEQEKEllhsqntwlntELKTKTDELLALGREKGNEILELKCNLEN 228
Cdd:TIGR02169 279 KKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEKERELE-----------DAEERLAKLEAEIDKLLAEIEELEREIEE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 229 KKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKF------HNELNAHI-KLSNLYKSAADDSEAKSN 301
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLeklkreINELKRELdRLQEELQRLSEELADLNA 427
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 119611610 302 ELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMlEKIGRLEKELENANDLLSATKRKGAIL 370
Cdd:TIGR02169 428 AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE-QELYDLKEEYDRVEKELSKLQRELAEA 495
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
19-507 |
9.39e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 9.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 19 KSVQNKLEKFLADQQSEIDGLKGRHEKFK------VESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKal 92
Cdd:TIGR04523 172 ENELNLLEKEKLNIQKNIDKIKNKLLKLElllsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEIS-- 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 93 tEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQ---ELEYLTED-----VKRLNEKLKESNTTKGELQL 164
Cdd:TIGR04523 250 -NTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQlksEISDLNNQkeqdwNKELKSELKNQEKKLEEIQN 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 165 KLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKG----------NEILELKCNLENKKEEVS 234
Cdd:TIGR04523 329 QISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQsykqeiknleSQINDLESKIQNQEKLNQ 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 235 RLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFH------NELNAHIK--------LSNLYKSAADDSEAKS 300
Cdd:TIGR04523 409 QKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSvkeliiKNLDNTREsletqlkvLSRSINKIKQNLEQKQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 301 NELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSK---DQMEKEMLEK---IGRLEKELENANDLLSATKRKGAILSEEE 374
Cdd:TIGR04523 489 KELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKekiEKLESEKKEKeskISDLEDELNKDDFELKKENLEKEIDEKNK 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 375 laamsptaaavaKIVKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASL 454
Cdd:TIGR04523 569 ------------EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNI 636
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 119611610 455 SVKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLSQQIRVLLMEL 507
Cdd:TIGR04523 637 KSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKEL 689
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
167-470 |
9.46e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 9.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 167 DELQASDVSVKYREKRLEQEKELLHSQNTWLNTEL---KTKTDELLALGREKGNEILELKCNLENKKEEVSRLEEQMNGL 243
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALaelRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 244 KTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLKEAGEANKA 323
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 324 IQDHLLEVEQSKDQMEkEMLEKIGRLEKELENANDLLSATKRKGAILSEEelaamsptaaavakivkpgmkLTELYNAYV 403
Cdd:TIGR02168 826 LESLERRIAATERRLE-DLEEQIEELSEDIESLAAEIEELEELIEELESE---------------------LEALLNERA 883
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 119611610 404 ETQDQLlleklenKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQE 470
Cdd:TIGR02168 884 SLEEAL-------ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
13-511 |
9.76e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.41 E-value: 9.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 13 ELNKLPKSVQNKLEKFLADQQSEIDGLKGRHE-------KFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKL 85
Cdd:pfam15921 246 QLEALKSESQNKIELLLQQHQDRIEQLISEHEveitgltEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLEST 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 86 NNQLKALTEKNKELeiAQDRNIAIQSQFTRTKEEL---EAEKRDLIRTNERLSQELEYLTEDvkrLNEKLKESNTTKGEL 162
Cdd:pfam15921 326 VSQLRSELREAKRM--YEDKIEELEKQLVLANSELteaRTERDQFSQESGNLDDQLQKLLAD---LHKREKELSLEKEQN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 163 QLKLDELQASDVSVKYREKRLEQ---EKELLHSQNTWLNTELKTKTDELLALGREKgNEILE----LKCNLENKKEEVSR 235
Cdd:pfam15921 401 KRLWDRDTGNSITIDHLRRELDDrnmEVQRLEALLKAMKSECQGQMERQMAAIQGK-NESLEkvssLTAQLESTKEMLRK 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 236 LEEQMNGLKTSNEHLQKHVEDLLTKLKEaKEQQASMEEKFHNELNAHIKLSnlyksaaddseaksneltraVEELHKLLK 315
Cdd:pfam15921 480 VVEELTAKKMTLESSERTVSDLTASLQE-KERAIEATNAEITKLRSRVDLK--------------------LQELQHLKN 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 316 EageankaiQDHLLEVEQSKDQMEKEMLEK---IGRLEKELENANDLLSATKRK-GAILSEEelaamsptaaavAKIVKp 391
Cdd:pfam15921 539 E--------GDHLRNVQTECEALKLQMAEKdkvIEILRQQIENMTQLVGQHGRTaGAMQVEK------------AQLEK- 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 392 gmkltELYNAYVETQDqllLEKLENKRinkylDEIVKEVEAKAPILKRQREEYERAQ----KAVASLSVKLEQAMKEIQR 467
Cdd:pfam15921 598 -----EINDRRLELQE---FKILKDKK-----DAKIRELEARVSDLELEKVKLVNAGserlRAVKDIKQERDQLLNEVKT 664
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 119611610 468 LQEDTDKANKQSSVLERDNR----RMEIQVKDLSQQIRVLLMELEEAR 511
Cdd:pfam15921 665 SRNELNSLSEDYEVLKRNFRnkseEMETTTNKLKMQLKSAQSELEQTR 712
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
291-511 |
1.44e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 291 SAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMeKEMLEKIGRLEKELENANDLLSATKRKGAIL 370
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI-AALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 371 SEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKA 450
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 119611610 451 VASLSVKLEQAMKEIQRLQEDTDKA----NKQSSVLERDNRRMEIQVKDLSQQIRVLLMELEEAR 511
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLlarlEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
177-559 |
1.51e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 177 KYREKRLEQEKellhsqntwlntelktktdellalgrekgneilelkcNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEd 256
Cdd:TIGR02168 169 KYKERRKETER-------------------------------------KLERTRENLDRLEDILNELERQLKSLERQAE- 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 257 lltKLKEAKEQQASMEEKfhnelnAHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEqskd 336
Cdd:TIGR02168 211 ---KAERYKELKAELREL------ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS---- 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 337 qmekEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLEN 416
Cdd:TIGR02168 278 ----ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 417 KRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQE-----DTDKANKQSSVLERDNRRMEI 491
Cdd:TIGR02168 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEArlerlEDRRERLQQEIEELLKKLEEA 433
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 119611610 492 QVKDLSQQIRVLLMELEEARGNHviRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALRE 559
Cdd:TIGR02168 434 ELKELQAELEELEEELEELQEEL--ERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
181-282 |
1.57e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 41.58 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 181 KRLEQEKELLHSQNTWLNTELKTKTDELLALG---REKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDL 257
Cdd:pfam05911 684 KRLKEEFEQLKSEKENLEVELASCTENLESTKsqlQESEQLIAELRSELASLKESNSLAETQLKCMAESYEDLETRLTEL 763
|
90 100
....*....|....*....|....*
gi 119611610 258 LTKLKEAKEQQASMEEKFHNELNAH 282
Cdd:pfam05911 764 EAELNELRQKFEALEVELEEEKNCH 788
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
110-511 |
1.98e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 110 QSQFTRTKEELEA-EKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQL----------KLDELQA------S 172
Cdd:PRK02224 186 RGSLDQLKAQIEEkEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEvleeheerreELETLEAeiedlrE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 173 DVSVKYREKrlEQEKELLHSQNTWLNtELKTKTDELLA---LGREKGNEILELKCNLENKKEEV-SRLEEQMNGLKTSN- 247
Cdd:PRK02224 266 TIAETERER--EELAEEVRDLRERLE-ELEEERDDLLAeagLDDADAEAVEARREELEDRDEELrDRLEECRVAAQAHNe 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 248 --EHLQKHVEDLLTKLKEAKEQQASMEEKFHNElnahiklsnlyKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQ 325
Cdd:PRK02224 343 eaESLREDADDLEERAEELREEAAELESELEEA-----------REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 326 DHLLEVEQSKD---QMEKEMLEKIGRLEKELENANDLLSATK--------------------RKGAILSEEELAAMSPTA 382
Cdd:PRK02224 412 DFLEELREERDelrEREAELEATLRTARERVEEAEALLEAGKcpecgqpvegsphvetieedRERVEELEAELEDLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 383 AAVAKIVKPGMKLtelynayVETQDQllLEKLENKRinkylDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAM 462
Cdd:PRK02224 492 EEVEERLERAEDL-------VEAEDR--IERLEERR-----EDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR 557
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 119611610 463 KEIQRLQEDTDKANKQSSVLERDNRRMEIQVKDLsQQIRVLLMELEEAR 511
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAE 605
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
25-498 |
2.27e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 25 LEKFLAdQQSEIDGLKGRHEKFKVESEQQYFEIEKRLshsqERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQD 104
Cdd:PRK03918 181 LEKFIK-RTENIEELIKEKEKELEEVLREINEISSEL----PELREELEKLEKEVKELEELKEEIEELEKELESLEGSKR 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 105 RNIAIQSQFTRTKEELEAEKRDLiRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLE 184
Cdd:PRK03918 256 KLEEKIRELEERIEELKKEIEEL-EEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 185 QEKELLHsqntWLNTELKTKTDELLALGR--EKGNEILELKCNLENKK-----EEVSRLEEQMNGLKTSNEHLQKHVEDL 257
Cdd:PRK03918 335 EKEERLE----ELKKKLKELEKRLEELEErhELYEEAKAKKEELERLKkrltgLTPEKLEKELEELEKAKEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 258 LTKLKEAKEQQASMEEKFhNELNAHIKLSNLYKSAADDSEAKS--NELTRAVEELHKLLKEAGEANKAIQDHLLEVE--- 332
Cdd:PRK03918 411 TARIGELKKEIKELKKAI-EELKKAKGKCPVCGRELTEEHRKEllEEYTAELKRIEKELKEIEEKERKLRKELRELEkvl 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 333 --QSKDQMEKEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLL 410
Cdd:PRK03918 490 kkESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELE 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 411 LEKLE-NKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVAslsvKLEQAMKEIQRLQEDTDKANKQSSVLERDNRRM 489
Cdd:PRK03918 570 EELAElLKELEELGFESVEELEERLKELEPFYNEYLELKDAEK----ELEREEKELKKLEEELDKAFEELAETEKRLEEL 645
|
....*....
gi 119611610 490 EIQVKDLSQ 498
Cdd:PRK03918 646 RKELEELEK 654
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
160-501 |
3.29e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 160 GELQLKLDELQASDVSVKYREKRLEQEKELLHSQNtwlntELKTKTDELLalGREKGNEILELKCNLENKKEEVSRLEEQ 239
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQ-----ALLKEKREYE--GYELLKEKEALERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 240 MNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHI-KLSNLYKSAADDSEAKSNELTRAVEELHKLLKEag 318
Cdd:TIGR02169 253 LEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIgELEAEIASLERSIAEKERELEDAEERLAKLEAE-- 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 319 eankaIQDHLLEVEQSKDQMEKEMLEKIgRLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTEL 398
Cdd:TIGR02169 331 -----IDKLLAEIEELEREIEEERKRRD-KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 399 YNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQ 478
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484
|
330 340
....*....|....*....|...
gi 119611610 479 SSVLERDNRRMEIQVKDLSQQIR 501
Cdd:TIGR02169 485 LSKLQRELAEAEAQARASEERVR 507
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
32-325 |
3.56e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.48 E-value: 3.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 32 QQSEIDGLKGRHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLNNQLKALTE--KNKELEIAQDRNIAi 109
Cdd:pfam05483 336 QMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKfkNNKEVELEELKKIL- 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 110 qsqftrtkeeleAEKRDLIRTNERLSQELEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKEL 189
Cdd:pfam05483 415 ------------AEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEK 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 190 LHSQNTWLNTELKTKTDELLALGREKGNEILELKCNLE---NKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKE 266
Cdd:pfam05483 483 EKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEdiiNCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGD 562
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 119611610 267 QQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVEELHKLLKEAGEANKAIQ 325
Cdd:pfam05483 563 EVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALK 621
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
65-499 |
4.52e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 39.88 E-value: 4.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 65 QERLVNETRECQSLRLELEKLNNQLKALTEKNKELEIAQD---RNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYL 141
Cdd:PRK01156 151 RKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEklkSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNA 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 142 TEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKgNEILE 221
Cdd:PRK01156 231 MDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYK-NDIEN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 222 LKCNLENKKEEVSRLEEQMNGLktsnEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNaHIKLSNLYKSAADDSEAKSN 301
Cdd:PRK01156 310 KKQILSNIDAEINKYHAIIKKL----SVLQKDYNDYIKKKSRYDDLNNQILELEGYEMD-YNSYLKSIESLKKKIEEYSK 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 302 ELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKemleKIGRLEKELENANDLLSATKRKGAILSEEELAAMSPT 381
Cdd:PRK01156 385 NIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISS----KVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGT 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 382 AAAVAKIvkpgmklTELYNAYVETQDQLLLEKLENKRINKYLDE-IVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQ 460
Cdd:PRK01156 461 TLGEEKS-------NHIINHYNEKKSRLEEKIREIEIEVKDIDEkIVDLKKRKEYLESEEINKSINEYNKIESARADLED 533
|
410 420 430
....*....|....*....|....*....|....*....
gi 119611610 461 AMKEIQRLQEDTDKANkqssvlERDNRRMEIQVKDLSQQ 499
Cdd:PRK01156 534 IKIKINELKDKHDKYE------EIKNRYKSLKLEDLDSK 566
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
76-269 |
5.13e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.43 E-value: 5.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 76 QSLRLELEKLNNQLKALtekNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLirtnERLSQELEYLTEDVKRLNEKLKES 155
Cdd:COG3883 26 SELQAELEAAQAELDAL---QAELEELNEEYNELQAELEALQAEIDKLQAEI----AEAEAEIEERREELGERARALYRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 156 NTTKGELQLKLDELQASDV--SVKYREKRLEQEKELLHSQNTwLNTELKTKTDELlalgREKGNEILELKCNLENKKEEV 233
Cdd:COG3883 99 GGSVSYLDVLLGSESFSDFldRLSALSKIADADADLLEELKA-DKAELEAKKAEL----EAKLAELEALKAELEAAKAEL 173
|
170 180 190
....*....|....*....|....*....|....*.
gi 119611610 234 SRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQA 269
Cdd:COG3883 174 EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
132-316 |
5.50e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 5.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 132 ERLSQELEYLTEDVKRLNEKLKESNTTKGELQ------LKLDELQASDVSVKYREKRLEQEKELLhsqntwlnTELKTKT 205
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQerrealQRLAEYSWDEIDVASAEREIAELEAEL--------ERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 206 DELLALGREkgneilelkcnLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKF----HNELNA 281
Cdd:COG4913 685 DDLAALEEQ-----------LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLArlelRALLEE 753
|
170 180 190
....*....|....*....|....*....|....*
gi 119611610 282 HIKLSNLYKSAADDSEAKSNELTRAVEELHKLLKE 316
Cdd:COG4913 754 RFAAALGDAVERELRENLEERIDALRARLNRAEEE 788
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
5-272 |
6.18e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 39.72 E-value: 6.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 5 LQQVLERTELNKLPKSVQNKLEKFLADQQSEIDGLKGRHEKFKVESEQQYFEIEKRlshsqerlVNETR-ECQSLRLELE 83
Cdd:pfam15921 543 LRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKE--------INDRRlELQEFKILKD 614
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 84 KLNNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYLTEDVKRLNE----KLKESNTTK 159
Cdd:pfam15921 615 KKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRnfrnKSEEMETTT 694
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 119611610 160 GELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALgrEKGNEILELKCNLENK-----KEEVS 234
Cdd:pfam15921 695 NKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDAL--QSKIQFLEEAMTNANKekhflKEEKN 772
|
250 260 270
....*....|....*....|....*....|....*...
gi 119611610 235 RLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASME 272
Cdd:pfam15921 773 KLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
|
|
| |
