NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|119598222|gb|EAW77816|]
View 

ceroid-lipofuscinosis, neuronal 6, late infantile, variant, isoform CRA_e [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CLN6 super family cl21022
Ceroid-lipofuscinosis neuronal protein 6; This family of proteins is found in eukaryotes. ...
 30-105 8.12e-41

Ceroid-lipofuscinosis neuronal protein 6; This family of proteins is found in eukaryotes. Proteins in this family are typically between 190 and 310 amino acids in length.


The actual alignment was detected with superfamily member pfam15156:

Pssm-ID: 464536  Cd Length: 280  Bit Score: 135.66  E-value: 8.12e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 119598222   30 GSVSADEAARTAPFHLDLWFYFTLQNWVLDFGRPIAMLVFPLEWFPLNKPSVGDYFHMAYNVITPFLLLKWLPAPP 105
Cdd:pfam15156   1 GSKENDPKVKRQQFHLDLWFCFTLQNWVLDFGRPIVMIILPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSP 76
 
Name Accession Description Interval E-value
CLN6 pfam15156
Ceroid-lipofuscinosis neuronal protein 6; This family of proteins is found in eukaryotes. ...
 30-105 8.12e-41

Ceroid-lipofuscinosis neuronal protein 6; This family of proteins is found in eukaryotes. Proteins in this family are typically between 190 and 310 amino acids in length.


Pssm-ID: 464536  Cd Length: 280  Bit Score: 135.66  E-value: 8.12e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 119598222   30 GSVSADEAARTAPFHLDLWFYFTLQNWVLDFGRPIAMLVFPLEWFPLNKPSVGDYFHMAYNVITPFLLLKWLPAPP 105
Cdd:pfam15156   1 GSKENDPKVKRQQFHLDLWFCFTLQNWVLDFGRPIVMIILPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSP 76
 
Name Accession Description Interval E-value
CLN6 pfam15156
Ceroid-lipofuscinosis neuronal protein 6; This family of proteins is found in eukaryotes. ...
 30-105 8.12e-41

Ceroid-lipofuscinosis neuronal protein 6; This family of proteins is found in eukaryotes. Proteins in this family are typically between 190 and 310 amino acids in length.


Pssm-ID: 464536  Cd Length: 280  Bit Score: 135.66  E-value: 8.12e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 119598222   30 GSVSADEAARTAPFHLDLWFYFTLQNWVLDFGRPIAMLVFPLEWFPLNKPSVGDYFHMAYNVITPFLLLKWLPAPP 105
Cdd:pfam15156   1 GSKENDPKVKRQQFHLDLWFCFTLQNWVLDFGRPIVMIILPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSP 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH