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Conserved domains on  [gi|1189359312|gb|ARO40861|]
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cytochrome b, partial (mitochondrion) [insect gut metagenome]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-112 3.51e-87

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 257.64  E-value: 3.51e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00100   28 SSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSY 107

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00100  108 LFLETWNIGIILLFTVMATAFMGYVLPWGQMS 139
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-112 3.51e-87

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 257.64  E-value: 3.51e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00100   28 SSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSY 107

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00100  108 LFLETWNIGIILLFTVMATAFMGYVLPWGQMS 139
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-112 4.90e-50

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 157.14  E-value: 4.90e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:cd00284    20 SYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSY 99

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1189359312  81 M--FLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:cd00284   100 KkpRELTWVIGVILLLLTMATAFMGYVLPWGQMS 133
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-112 1.15e-45

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 151.10  E-value: 1.15e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   3 WWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY-- 80
Cdd:COG1290    39 SYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkk 118

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1189359312  81 ---MfleTWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:COG1290   119 preL---NWIIGVLLLLLTMAEAFTGYSLPWDQLS 150
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-112 1.22e-45

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 145.60  E-value: 1.22e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYG-- 78
Cdd:pfam00033  11 SIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgf 90

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1189359312  79 SYMFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:pfam00033  91 SYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMS 124
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-112 3.51e-87

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 257.64  E-value: 3.51e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00100   28 SSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSY 107

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00100  108 LFLETWNIGIILLFTVMATAFMGYVLPWGQMS 139
CYTB MTH00119
cytochrome b; Provisional
 1-112 1.04e-77

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 233.25  E-value: 1.04e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00119   29 SAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSY 108

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00119  109 LYKETWNTGVILLLLLMATAFVGYVLPWGQMS 140
CYTB MTH00131
cytochrome b; Provisional
 1-112 4.66e-76

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 229.15  E-value: 4.66e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00131   28 SVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSY 107

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00131  108 LYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 139
CYTB MTH00074
cytochrome b; Provisional
 1-112 3.37e-75

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 226.87  E-value: 3.37e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00074   29 SSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSY 108

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00074  109 MYKETWNIGVILLFLVMATAFVGYVLPWGQMS 140
CYTB MTH00156
cytochrome b; Provisional
 1-112 4.74e-75

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 225.82  E-value: 4.74e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00156   18 SYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSY 97

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00156   98 KLKHTWMSGVIILFLVMATAFLGYVLPWGQMS 129
CYTB MTH00191
cytochrome b; Provisional
 1-112 6.65e-73

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 220.56  E-value: 6.65e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00191   25 SYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSY 104

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00191  105 LNKETWNVGVILLILSMATAFLGYVLPWGQMS 136
CYTB MTH00145
cytochrome b; Provisional
 1-112 4.14e-68

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 208.61  E-value: 4.14e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00145   29 SIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSY 108

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00145  109 LMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMS 140
CYTB MTH00034
cytochrome b; Validated
 1-112 4.12e-67

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 206.10  E-value: 4.12e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00034   28 SIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSY 107

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00034  108 VNIETWNIGVILFLLTMLTAFVGYVLPWGQMS 139
CYTB MTH00016
cytochrome b; Validated
 1-112 4.62e-66

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 203.37  E-value: 4.62e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00016   29 SIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSY 108

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00016  109 FLMETWNIGVILLLLTMATAFLGYVLPWGQMS 140
CYTB MTH00224
cytochrome b; Provisional
 1-112 1.28e-55

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 176.65  E-value: 1.28e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00224   29 SIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSF 108

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00224  109 NLSETWNIGVILFILTMATAFLGYVLPWGQMS 140
CYTB MTH00022
cytochrome b; Validated
 1-112 2.79e-55

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 176.04  E-value: 2.79e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00022   27 SYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGY 106

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00022  107 LKFHVWNVGVVIFLLTMATAFMGYVLPWGQMS 138
CYTB MTH00053
cytochrome b; Provisional
 1-112 1.54e-53

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 171.43  E-value: 1.54e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00053   29 SYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSY 108

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00053  109 TKIIVWNVGVLIFLLMILTAFIGYVLPWGQMS 140
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-112 4.90e-50

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 157.14  E-value: 4.90e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:cd00284    20 SYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSY 99

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1189359312  81 M--FLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:cd00284   100 KkpRELTWVIGVILLLLTMATAFMGYVLPWGQMS 133
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
3-112 1.15e-45

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 151.10  E-value: 1.15e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   3 WWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY-- 80
Cdd:COG1290    39 SYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkk 118

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1189359312  81 ---MfleTWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:COG1290   119 preL---NWIIGVLLLLLTMAEAFTGYSLPWDQLS 150
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-112 1.22e-45

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 145.60  E-value: 1.22e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYG-- 78
Cdd:pfam00033  11 SIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgf 90

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1189359312  79 SYMFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:pfam00033  91 SYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMS 124
CYTB MTH00033
cytochrome b; Provisional
 1-112 4.50e-45

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 149.70  E-value: 4.50e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00033   25 SYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGY 104

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00033  105 SRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMS 136
CYTB MTH00086
cytochrome b; Provisional
 1-112 7.75e-38

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 130.06  E-value: 7.75e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00086   17 SYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSY 96

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00086   97 RLKKVWISGLTIYLLVMMEAFMGYVLVWAQMS 128
CYTB MTH00046
cytochrome b; Validated
 1-112 2.14e-26

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 100.06  E-value: 2.14e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   1 SAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSY 80
Cdd:MTH00046   19 NYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSY 98

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1189359312  81 MFLETWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:MTH00046   99 SKKGVWNVGFILYLLVMVEAFLGYILPWHQMS 130
PRK03735 PRK03735
cytochrome b6; Provisional
 6-110 2.00e-22

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 87.07  E-value: 2.00e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   6 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSYMFLE- 84
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100
                  ....*....|....*....|....*..
gi 1189359312  85 -TWNIGVVLLFTVMATAFMGYVLPWGQ 110
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQ 150
petB CHL00070
cytochrome b6
 6-111 4.10e-15

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 67.82  E-value: 4.10e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1189359312   6 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLFIHVGRGLYYGSYMFLE- 84
Cdd:CHL00070   36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                          90       100
                  ....*....|....*....|....*...
gi 1189359312  85 -TWNIGVVLLFTVMATAFMGYVLPWGQM 111
Cdd:CHL00070  116 lTWVTGVVLAVLTVSFGVTGYSLPWDQI 143
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
61-112 3.72e-10

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 53.78  E-value: 3.72e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1189359312  61 SMFFICLFIHVGRGLYYGSYMFLE--TWNIGVVLLFTVMATAFMGYVLPWGQMS 112
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLS 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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