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Conserved domains on  [gi|1183591687|emb|SMG18196|]
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putative spermidine/putrescine transport system permease protein [Paraburkholderia susongensis]

Protein Classification

ABC transporter permease( domain architecture ID 11439530)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0016020
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 1-255 2.22e-77

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


:

Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 235.01  E-value: 2.22e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687   1 MNRNGPVALGFHAVFTVFLIAPLAIVCLVAFTPGNLLSVPTIHFSMRWFEALVRNPDFTQAFSNSLWLATLSATLAATLG 80
Cdd:COG1177     2 SRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  81 VPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVSLVMAHVMLVFPYCLRLIMASLVTMTRDA 160
Cdd:COG1177    82 TPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 161 EHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTITLPVRIYMSMSETVDPQVAAVATVIM 240
Cdd:COG1177   162 EEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLI 241

                         250
                  ....*....|....*
gi 1183591687 241 AVTLGLMFALDRLVG 255
Cdd:COG1177   242 LLSLLLLLLAERLRR 256
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 1-255 2.22e-77

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 235.01  E-value: 2.22e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687   1 MNRNGPVALGFHAVFTVFLIAPLAIVCLVAFTPGNLLSVPTIHFSMRWFEALVRNPDFTQAFSNSLWLATLSATLAATLG 80
Cdd:COG1177     2 SRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  81 VPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVSLVMAHVMLVFPYCLRLIMASLVTMTRDA 160
Cdd:COG1177    82 TPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 161 EHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTITLPVRIYMSMSETVDPQVAAVATVIM 240
Cdd:COG1177   162 EEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLI 241

                         250
                  ....*....|....*
gi 1183591687 241 AVTLGLMFALDRLVG 255
Cdd:COG1177   242 LLSLLLLLLAERLRR 256
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 44-249 2.10e-44

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 150.52  E-value: 2.10e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  44 FSMRWFEALVRNPDFTQAFSNSLWLATLSATLAATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTR 123
Cdd:PRK09500   41 FTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFML 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 124 VGVSGSFVSLVMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELT 203
Cdd:PRK09500  121 LGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVV 200

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1183591687 204 ATIFIAAPTTITLPVRIYMSMSETVDPQVAAVATVIMAVTLGLMFA 249
Cdd:PRK09500  201 VSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVIL 246
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 65-250 5.49e-25

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 98.47  E-value: 5.49e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  65 SLWLATLSATLAATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVSL----------- 133
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELfgislvftftg 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 134 -VMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIA--- 209
Cdd:TIGR02141  83 aVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAgni 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1183591687 210 APTTITLPVRIYMSMSETVDPQVAAVAtVIMAVTLGLMFAL 250
Cdd:TIGR02141 163 PGETQTIPLAIYDAVESDYELAHQLSL-VLLAISLIVLLLV 202
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 62-248 1.58e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 72.70  E-value: 1.58e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  62 FSNSLWLATLSATLAATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVSLVMAHVMLV 141
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 142 ----FPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTITLP 217
Cdd:cd06261    81 llliAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1183591687 218 VRIYMSMSETVdPQVAAVATVIMAVTLGLMF 248
Cdd:cd06261   161 TGLLLIFAILF-PGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 88-254 2.05e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.91  E-value: 2.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  88 MRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVSLVMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVSL 167
Cdd:pfam00528  10 LRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARAL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 168 GANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTI--TLPVRIYMSMSETVDPQVAAVATVIMAVTLG 245
Cdd:pfam00528  90 GASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLglLLIEAILGYDYPEIQGPVLAAALILLLLNLL 169


                  ....*....
gi 1183591687 246 LMFALDRLV 254
Cdd:pfam00528 170 VDILQRLLD 178
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 70-195 3.04e-06

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 46.38  E-value: 3.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  70 TLSATL-AATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSF------VSLVMAHVMLVF 142
Cdd:NF038017    5 SGTATLiAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFLgllytpTAMIIAQAVLAL 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1183591687 143 PYCLRLIMASLVTMTRDAEHAAVSLGANawttfRRITLPALVP----GIAAGWVLGF 195
Cdd:NF038017   85 PIVAGLTLAAVQGLDPELRLQILSLGAT-----RWQALWTLLKearfALLAAVLAGF 136
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 1-255 2.22e-77

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 235.01  E-value: 2.22e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687   1 MNRNGPVALGFHAVFTVFLIAPLAIVCLVAFTPGNLLSVPTIHFSMRWFEALVRNPDFTQAFSNSLWLATLSATLAATLG 80
Cdd:COG1177     2 SRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  81 VPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVSLVMAHVMLVFPYCLRLIMASLVTMTRDA 160
Cdd:COG1177    82 TPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 161 EHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTITLPVRIYMSMSETVDPQVAAVATVIM 240
Cdd:COG1177   162 EEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMIRRGISPEINALSTLLI 241

                         250
                  ....*....|....*
gi 1183591687 241 AVTLGLMFALDRLVG 255
Cdd:COG1177   242 LLSLLLLLLAERLRR 256
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
6-255 1.05e-44

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 157.63  E-value: 1.05e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687   6 PVALGFHAVFTVFLIAPLAIVCLVAFTPGNLLSvptihFSMRWFEALVRNPDFTQAFSNSLWLATLSATLAATLGVPAAL 85
Cdd:COG1178   289 LALALCLLLVLLGLLLPLLALLLWSLTKALDDN-----LTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAY 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  86 GLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGV---SGSFVSLVMAHVMLVFPYCLRLIMASLVTMTRDAEH 162
Cdd:COG1178   364 LVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPlllYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEE 443

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 163 AAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTITLPVRIYMSMSETVDPQVAAVATVIMAV 242
Cdd:COG1178   444 AARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLVLV 523

                         250
                  ....*....|...
gi 1183591687 243 TLGLMFALDRLVG 255
Cdd:COG1178   524 SLLPVLLLERLLG 536
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 44-249 2.10e-44

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 150.52  E-value: 2.10e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  44 FSMRWFEALVRNPDFTQAFSNSLWLATLSATLAATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTR 123
Cdd:PRK09500   41 FTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFML 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 124 VGVSGSFVSLVMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELT 203
Cdd:PRK09500  121 LGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVV 200

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1183591687 204 ATIFIAAPTTITLPVRIYMSMSETVDPQVAAVATVIMAVTLGLMFA 249
Cdd:PRK09500  201 VSSFVTGPSYEILPLKIYSMVKVGVSPEVNALATILLVLSLVLVIL 246
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 15-253 2.61e-38

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 134.88  E-value: 2.61e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  15 FTVFLIAPLAIVCLVAFTPgnLLSVPTIHFSMRW--FEALVRNPDFTQAFSNSLWLATLSATLAATLGVPAALGLMRYRF 92
Cdd:COG0555     9 FGLTLGLTLLYLSLIVLLP--LAALVLKAAGLGWaeFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRF 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  93 AGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVSL------------VMAHVMLVFPYCLRLIMASLVTMTRDA 160
Cdd:COG0555    87 PGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPlgikvaftplgiVLAQTFVSLPFVVRTVQPVLEELDPEL 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 161 EHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPT---TITLPVRIYMSMSETVDPQVAAVAT 237
Cdd:COG0555   167 EEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLpmkTEILPLLIYLKLEEGDYAGATAIAL 246

                         250
                  ....*....|....*.
gi 1183591687 238 VIMAVTLGLMFALDRL 253
Cdd:COG0555   247 VLLLISFLLLLLINLL 262
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 56-253 9.49e-34

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 121.69  E-value: 9.49e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  56 PDFTQAFSNSLWLATLSATLAATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSG------- 128
Cdd:COG4149     3 PEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGqlleelf 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 129 ------SFVSLVMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDEL 202
Cdd:COG4149    83 gislvfTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALGEF 162

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1183591687 203 TATIFIA---APTTITLPVRIYMSMSETVDPQVAAVATVIMAVTLGLMFALDRL 253
Cdd:COG4149   163 GATLMFAgniPGKTQTLPLAIYDAVEAGDYAAAHALSLILLAISFVVLLLLNLL 216
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
13-255 1.95e-32

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 124.12  E-value: 1.95e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  13 AVFTVFLIAPLAIVCLVAFTPGnllsvptihfsMRWFEALVRNPDFTQAFSNSLWLATLSATLAATLGVPAALGLMRYRF 92
Cdd:COG1178    18 LLLALLVLLPLLALLLRAFTDG-----------LANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDF 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  93 AGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSG---------------SFVSLVMAHVMLVFPYCLRLIMASLVTMT 157
Cdd:COG1178    87 PGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNtllralfgleppdiyGLGGIILVLVLFNYPYVYLLLRAALRSID 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 158 RDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTiTLPVRIYMSMSETVDPQVAAV-A 236
Cdd:COG1178   167 ASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYT-TLTTAIYQAWLGDFDLGAAAAlA 245

                         250
                  ....*....|....*....
gi 1183591687 237 TVIMAVTLGLMFALDRLVG 255
Cdd:COG1178   246 LVLLLLVLLLLLLERRLRR 264
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 13-262 1.36e-29

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 112.55  E-value: 1.36e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  13 AVFTVFLIAPLAIVCLVAFTPGNLLSVPTIHFSMRWFEALVRNPDFTQAFSNSLWLATLSATLAATLGVPAALGLMRYRF 92
Cdd:COG1176    20 LWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPP 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  93 AGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSF-------------------VSLVMAHVMLvfPYCLRLIMASL 153
Cdd:COG1176   100 RWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLllalglideplrllytefaVVIGLVYVYL--PFMVLPLYAAL 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 154 VTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTITLPVRIYMSMSETVD-PQV 232
Cdd:COG1176   178 EKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNwPLA 257

                         250       260       270
                  ....*....|....*....|....*....|
gi 1183591687 233 AAVATVIMAVTLGLMFALDRLVGVDQVLTG 262
Cdd:COG1176   258 AALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 18-242 4.68e-29

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 111.10  E-value: 4.68e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  18 FLIAPLAIVCLVAFTPGNLLSVPTiHFSMRWFEALVRNPDFTQAFSNSLWLATLSATLAATLGVPAALGLMRY-RFAGRN 96
Cdd:PRK10592   22 FLYAPMLMLVIYSFNSSKLVTVWA-GWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRFgRFRGSN 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  97 AINSLLLSPLMIPPVVLGVALLQLFTRVG------VSGSFVSLVMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVSLGAN 170
Cdd:PRK10592  101 GFAFMITAPLVMPDVITGLSLLLLFVALAhaigwpADRGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGAT 180

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1183591687 171 AWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTITLPVRIYMSMSETVDPQVAAVATVIMAV 242
Cdd:PRK10592  181 PLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFVSGPGATTLPMLVFSSVRMGVNPEINALATLILGV 252
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 13-252 3.48e-27

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 105.95  E-value: 3.48e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  13 AVFTVFLIAPLAIVCLVAF-TPGNLLSVPTI----HFSMRWFEALVRNPDFTQAFSNSLWLATLSATLAATLGVPAALGL 87
Cdd:COG0395    22 ILLALLFLFPLYWMVVTSFkPPAEIFSGPPSllpsEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYAL 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  88 MRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVSLVMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVSL 167
Cdd:COG0395   102 ARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARID 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 168 GANAWTTFRRITLPALVPGIAAGWVLGFASSFDE-LTATIFIAAPTTITLPVRIYMSMSE--TVDPQVAAVATVIMAVTL 244
Cdd:COG0395   182 GASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDfLWPLILLTSPDLRTLPVGLASFQGQygTDWGLLMAAAVIATLPVL 261


                  ....*...
gi 1183591687 245 GLMFALDR 252
Cdd:COG0395   262 ILFLFLQR 269
modB PRK09421
molybdate ABC transporter permease subunit;
60-246 7.52e-26

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 101.15  E-value: 7.52e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  60 QAFSNSLWLATLSATLAATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVS------- 132
Cdd:PRK09421    9 QAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYewfgisf 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 133 ------LVMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATI 206
Cdd:PRK09421   89 afswrgAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEFGATI 168

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1183591687 207 -FIA--APTTITLPVRIYmSMSETVDPQVAAVATVIMAVTLGL 246
Cdd:PRK09421  169 tFVSniPGETQTIPSAMY-TLIQTPGGESAAARLCIISIAIAL 210
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 65-250 5.49e-25

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 98.47  E-value: 5.49e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  65 SLWLATLSATLAATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVSL----------- 133
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELfgislvftftg 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 134 -VMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIA--- 209
Cdd:TIGR02141  83 aVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAgni 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1183591687 210 APTTITLPVRIYMSMSETVDPQVAAVAtVIMAVTLGLMFAL 250
Cdd:TIGR02141 163 PGETQTIPLAIYDAVESDYELAHQLSL-VLLAISLIVLLLV 202
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 49-247 5.58e-25

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 99.01  E-value: 5.58e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  49 FEALVRNPDFTQAFSNSLWLATLSATLAATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSG 128
Cdd:TIGR01581  10 ILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLG 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 129 SFVSL------------VMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFA 196
Cdd:TIGR01581  90 PYLEAagiqvifstlgvVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWA 169

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1183591687 197 SSFDELTATIFIAAPT---TITLPVRIYMSMSETVDPQVAAVATVIMAVTLGLM 247
Cdd:TIGR01581 170 RALGEFGATLMFAGSIqgkTRTLPLAIYLNIQSDNIEAAVASALLLLVIAFLLL 223
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
15-253 3.55e-24

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 97.90  E-value: 3.55e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  15 FTVFLIAPLAIVCLVAFTPGNLLSVPTIHFSMRWFEALVRNPDFTQAFSNSLWLATLSATLAATLGVPAALGLMRYRFAG 94
Cdd:PRK10971   13 FTLSLGTSLLFVCLILLLPLSALVMQLSQMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPG 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  95 RNAINSLLLSPLMIPPVVLGVALLQLFTRVG------------VSGSFVSLVMAHVMLVFPYCLRLIMASLVTMTRDAEH 162
Cdd:PRK10971   93 RTLLDALMDLPFALPTAVAGLTLASLFSVNGwygewlakfdikVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEE 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 163 AAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIA---APTTITLPVRIYMSMSETVDPQVAAVATVI 239
Cdd:PRK10971  173 AAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIAgniAWKTEVTSLMIFVRLQEFDYPAASAIASVI 252

                         250
                  ....*....|....
gi 1183591687 240 MAVTLGLMFALDRL 253
Cdd:PRK10971  253 LAASLLLLFSINTL 266
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 13-248 4.76e-22

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 92.14  E-value: 4.76e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  13 AVFTVFLIAPLAIVCLVAFTPGNLLSVPTI---HFSMRWFEALVRNPDFTQAFSNSLWLATLSATLAATLGVPAALGLMR 89
Cdd:COG3833    23 IILAIIALFPILWVVSASFNPGGSLYSSSLipeNFTLENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFSR 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  90 YRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVSLVMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVSLGA 169
Cdd:COG3833   103 FRFKGRKAGLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPFNTWLMKGYFDTIPKELDEAAKIDGA 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 170 NAWTTFRRITLPALVPGIAAGWVLGFASSFDE-LTATIFIAAPTTITLPVRIYMSMSETVDPQVA--AVATVIMAVTLGL 246
Cdd:COG3833   183 SHFQIFFRIILPLAKPILAVVALLSFIGPWNDfILASVLLRSPENYTLAVGLYSFVSDQRNTNWGvfAAGAVLVAIPIVI 262


                  ..
gi 1183591687 247 MF 248
Cdd:COG3833   263 LF 264
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 61-253 9.96e-22

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 91.23  E-value: 9.96e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  61 AFSNSLWLATLSATLAATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVS-------- 132
Cdd:TIGR02139  51 AYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAplgikiaf 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 133 ----LVMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFI 208
Cdd:TIGR02139 131 tplgIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIFI 210

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1183591687 209 AAPT---TITLPVRIYMSMSETVDPQVAAVATVIMAVTLGLMFALDRL 253
Cdd:TIGR02139 211 AGNLpmkTEIAPLLIFQKLEQYDYAGATAIASVMLIISFVILLFINLL 258
cysT CHL00187
sulfate transport protein; Provisional
 49-226 2.82e-19

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 83.91  E-value: 2.82e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  49 FEALVRNPDFTQAFSNSLWLATLSATLAATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSG 128
Cdd:CHL00187   44 FLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIG 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 129 SFVS------------LVMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFA 196
Cdd:CHL00187  124 HLLShlgiqivftklgVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFS 203

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1183591687 197 SSFDELTATIFIA---APTTITLPVRIYMSMSE 226
Cdd:CHL00187  204 RAIGEYGSIVIISsniPFKDLVASVLIFQSLEQ 236
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
13-255 3.02e-18

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 82.10  E-value: 3.02e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  13 AVFTVFLIAPLAIVCLVAFTPGNLLSVPTIHFSMRWFEALVRNPDFTQAFSNSLWLATLSATLAATLGVPAALgLMRYRF 92
Cdd:COG1175    29 LLLLVFVLYPLLYTLYLSFTDWNLLGPPPEFVGLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLAL-LLNRKL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  93 AGRNAINSLLLSPLMIPPVVLGVALLQLF-----------TRVGVSG---------SFVSLVMAHVMLVFPYCLRLIMAS 152
Cdd:COG1175   108 RGRGFFRTLFFLPWVISPVVVALIWKWLFnpdygllnallGALGLEPinwlgdpslALPAVIIVTVWKGTGFNMLIFLAG 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 153 LVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTaTIFI-----AAPTTITLPVRIYMSMSET 227
Cdd:COG1175   188 LQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFD-LVYVltgggPGNSTTTLVLYIYQTAFQQ 266

                         250       260
                  ....*....|....*....|....*....
gi 1183591687 228 VDPQVA-AVATVIMAVTLGLMFALDRLVG 255
Cdd:COG1175   267 FDFGYAsAIAVVLFLIILVLTLLQLRLLR 295
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 13-254 9.15e-18

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 80.82  E-value: 9.15e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  13 AVFTVFLIAPLAIVCLVAFTPGNLLSVPTihfsmrwFEALVRNPDFTQAFSNSLWLATLSATLAATLGVPAALGLMRYRF 92
Cdd:PRK15050   33 LVLAPLVVYPLVRVVLQSLTGEHGLGLAT-------YRAVLGSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPF 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  93 AGRNAINSLLLSPLMIPPVVLGVALLQLFTRVG-VSGSFVSL-----------------VMAHVMLVFPYCLRLIMASLV 154
Cdd:PRK15050  106 PGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGsVNIALQRLfgleappldflyspggvILAEITFYTPFVVRPLLAAFA 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 155 TMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTITLPVRIYMSMSETVD-PQVA 233
Cdd:PRK15050  186 QLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPVLIYSKAIVDFDyPTAC 265

                         250       260
                  ....*....|....*....|.
gi 1183591687 234 AVATVIMAVTLGLmFALDRLV 254
Cdd:PRK15050  266 AIAVVNLALSLGL-YALYRRV 285
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 62-248 1.58e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 72.70  E-value: 1.58e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  62 FSNSLWLATLSATLAATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVSLVMAHVMLV 141
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 142 ----FPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTITLP 217
Cdd:cd06261    81 llliAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1183591687 218 VRIYMSMSETVdPQVAAVATVIMAVTLGLMF 248
Cdd:cd06261   161 TGLLLIFAILF-PGDLGVAAAVALILLLLSL 190
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 13-253 1.71e-14

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 72.56  E-value: 1.71e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  13 AVFTVFLIAPLAIVcLVAFTPGNLLSVPtihfsmrwfealvRNPDFTQAFSNSLWLATLSATLAATLGVP-----AALGL 87
Cdd:PRK09433  286 VLALLLLLPPLLAV-VVSGLNASLLRVL-------------AQPALWQALWTSLRIALAAALLAVVLTMMllwssRELRL 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  88 MRYRFAGRNAINSLLLsPLMIPPVVLGVAL-LQLFTRVGVSGSFVSLVMAHVMLV-FPYCLRLIMASLVTMTRDAEHAAV 165
Cdd:PRK09433  352 RQRKLAAQALELSGML-ILAMPGIVLATGLfLLLRNTTDLPASALGIVILTNALMaLPYALRVLEPPMRDIAARYGRLCQ 430

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 166 SLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTITLPVRIYMSMSETVDPQVAAVATVIMAVTLG 245
Cdd:PRK09433  431 SLGIRGWSRLRLIELRALRRPLAQAFAFACALSLGDFGVIALFGSQDFRTLPFLLYQQLGSYRSQDAAVTALLLLLLCLL 510


                  ....*...
gi 1183591687 246 LMFALDRL 253
Cdd:PRK09433  511 LFTLIERL 518
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 7-254 2.01e-13

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 69.71  E-value: 2.01e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687   7 VALGFHAVFTVFLIAPLAIVCLVAFTPGNLLSVPTIHFSmrwfeALVRNPDFTQAFSNSLWLATLSATLAATLGVPAALG 86
Cdd:TIGR03262   6 LLAGMILALLLFLLLPLLALLTKSVYDSDGDFIGLANFA-----EYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  87 LMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGS---------FVSLVMAHVMLVFPYCLRLIMASLVTMT 157
Cdd:TIGR03262  81 LTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGllggfsiygFWGIVIGEVFYTFPHALMILVTALSLAD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 158 RDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTItLPVRIYMSMSETVDPQVAAVAT 237
Cdd:TIGR03262 161 GRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNV-LATDIYKQVIGQQNFPMGAVVG 239

                         250
                  ....*....|....*..
gi 1183591687 238 VIMAVTLGLMFALDRLV 254
Cdd:TIGR03262 240 VLLLLPALLAFGIDRAI 256
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 56-210 7.57e-13

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 67.97  E-value: 7.57e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  56 PDFTQAFSNSLWLATLSATLAATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVSLVM 135
Cdd:COG4135   352 PGLLEPLGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPQIAFLFGLQVLLLRLGLDGTWLAVIW 431

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1183591687 136 AHVMLVFPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAA 210
Cdd:COG4135   432 AHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSVAQYLPTLLIGA 506
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 19-262 8.06e-11

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 61.77  E-value: 8.06e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  19 LIAPLAIVCLVAFTPGNLLsvptIHFSMRWFEALVRNPDFTQAFSNSLWLATLSATLAATLGVPAALGLMRYRFAGRNAI 98
Cdd:PRK09433    7 VLAAALLVALALLALLALW----LHAPGGDWDAVWQDSYLWHVLRFSFWQAFLSALLSVLPAIPLARALYRRRFPGRGLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  99 NSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVSL---------------VMAHVMLVFPYCLRLIMASLVTMTRDAEHA 163
Cdd:PRK09433   83 LRLCAMTLVLPVLVAVFGLLSVYGRSGWLAQLLQAlglewpfsiyglqgiLLAHVFFNLPLATRLLLQALESIPAEQRQL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 164 AVSLGANAWTTFRRITLPAL---VPGIAAGWVLGFASSFdeLTATIFIAAPTTITLPVRIYMSMSETVDPQVAAV-ATVI 239
Cdd:PRK09433  163 AAQLGMRGWQFFRLVEWPYLrrqLPPVAALIFMLCFTSF--ATVLTLGGGPKATTIELAIYQALSFDFDLARAALlALLQ 240

                         250       260
                  ....*....|....*....|...
gi 1183591687 240 MAVTLGLMFALDRLVGVDQVLTG 262
Cdd:PRK09433  241 MVLCLGLVLLSQRLSKAIAVGAT 263
malG PRK10998
maltose ABC transporter permease MalG;
11-250 2.19e-10

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 59.72  E-value: 2.19e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  11 FHAVFTVFLIAPLAIVCLVAFTPGNLLS---VPTIHFSMRWFEAL---VRNPD--FTQA-------FSNSLWLATLSATL 75
Cdd:PRK10998   19 LLLGFIALIMFPLLMVIAISLREGNFATgslIPEQISWEHWKLALgfsVEHADgrVTPPpfpvllwLWNSVKVAGITAIG 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  76 AATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVSLvMAHVMLVFPYC------LRLI 149
Cdd:PRK10998   99 IVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYIPFIGL-NTHGGVIFAYLggialhVWTI 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 150 MASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDEL-TATIFIAAPTTITLPVriymSMSETV 228
Cdd:PRK10998  178 KGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVpVASLLLRDVNSYTLAV----GMQQYL 253

                         250       260
                  ....*....|....*....|....*..
gi 1183591687 229 DPQVA-----AVATVIMAVTLGLMFAL 250
Cdd:PRK10998  254 NPQNYlwgdfAAAAVLSAIPITVVFLL 280
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 8-244 9.51e-10

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 58.54  E-value: 9.51e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687   8 ALGFHAVFTVFLIAPLAIV---CLVAFTPGNLlSVPTIHFSMRWFEAlvrnpDFTQAFSNSLWLATLSATLAATLGVPAA 84
Cdd:TIGR03262 283 CLVYCAIISAALLAVVGMAvyaSLVKFWPYNL-SLTLKHYNFDLMDG-----GGWEAYKNSLRLAATTALIGTILVFGGA 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  85 LGLMRYRFAG--RNAINSLLLSPLMIPPVVLGVALLQLFTRV-----GVSGSFVSLVMAHVMLVFPYCLRLIMASLVTMT 157
Cdd:TIGR03262 357 YLIEKTRGFGllRGVLRFLAILPMAVPGLVLGLGYIFFFNAPtnplnGLYGTMALLVLCTVVHFYTVSHLTAVTALKQID 436

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 158 RDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTITLPVRIyMSMSETVD-PQVAAVA 236
Cdd:TIGR03262 437 SEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFVNSMTTVSAVVFLYSPDTKLASVAI-LNMDDAGDiAPAAAMA 515


                  ....*...
gi 1183591687 237 TVIMAVTL 244
Cdd:TIGR03262 516 TLIVLTSA 523
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 1-253 6.33e-09

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 55.15  E-value: 6.33e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687   1 MNRNGPVALGFHAVFTVFLIAPLAIVCLVA-FTPGNLLSVPTIHFSMRWFEALVRNPDFTQAFSNSLWLATLSATLAATL 79
Cdd:COG0600     1 MTTSTRRRLRRLLLPLLSLALLLALWELAArLGLVPPFLLPSPSAVLAALVELLASGELWEHLLASLLRVLLGFALAALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  80 GVPAALGLMRYRFAgRNAINSLLLSPLMIPPVVLGVALLQLFtrvgvSGSFVSLVMAHVMLVFPYCLRLIMASLVTMTRD 159
Cdd:COG0600    81 GVPLGLLLGLSRLL-RRLLDPLLVFLRPIPPLALAPLLILWF-----GIGEASKIFVIFLGAFFPILLNTAAGVRSVDPE 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 160 AEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTITLPVRIYMSMSETvdPQVAAVATVI 239
Cdd:COG0600   155 LLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDT--DLVFAAILVI 232

                         250
                  ....*....|....
gi 1183591687 240 MAVTLGLMFALDRL 253
Cdd:COG0600   233 GLLGLLLDLLLRLL 246
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 61-246 1.51e-08

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 53.89  E-value: 1.51e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  61 AFSNSLWLATLSATLAATLGVPAALGLMRY----RFAG--RNAINSLLlsplMIPPVVLGV---ALLQLFTRVGVSGSFV 131
Cdd:COG0581    42 AIVGTLLLVLLATLIAVPLGVLAAIYLAEYarggRLARliRFAIDVLA----GVPSIVYGLfgyALFVLTLGLGFSLLAG 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 132 SLVMAhvMLVFPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAP 211
Cdd:COG0581   118 ALALA--LLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGETAPLLFTAGV 195

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1183591687 212 TT----------ITLPVRIY---MSMSETVDPQVAAVATVIMAVTLGL 246
Cdd:COG0581   196 SPflplslfdpfATLPVHIYnlaSSPYPAAQELAWAAALVLLLLVLLL 243
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 14-250 2.53e-08

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 54.15  E-value: 2.53e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  14 VFTVFLIAPLAIVCLVAFTPGNLLSVptihfsmrwfealVRNPDFTQAFSNSLWLATLSATLAATLGV-----PAALGLM 88
Cdd:TIGR01253 290 LALFFLFPPLLAIIIDALNSRNLLEV-------------LANPQLWQALGTSLRIALAAALLALTLAIallllSRELEAL 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  89 RYRFAGRNAINSLLLSpLMIPPVVLGVAL-LQLFTRVGVSGS-FVSLVMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVS 166
Cdd:TIGR01253 357 HKMKAGQFIEMAGMLI-LAIPGIVLAMGFfLLLNDRDFLNIDaDGIVIFCNALMAIPFALKILEAPFHDIMARYEMLCNS 435

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 167 LGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTITLPVRIYMSMSeTVDPQVAAVATVIMAVTLGL 246
Cdd:TIGR01253 436 LGIEGWQRFKLIELKALKAPLAQAFAFACALSIGDFGAIALFGNDDFRSLPFLLYQQIG-NYRNQDAAVTAGILLLLCFI 514


                  ....
gi 1183591687 247 MFAL 250
Cdd:TIGR01253 515 LFAF 518
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 61-254 6.82e-08

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 52.24  E-value: 6.82e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  61 AFSNSLWLATLSATLAATLGVPAALGLMRYRFAGR--NAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSF----VSLV 134
Cdd:TIGR00974  55 AIVGTLLLTLLAIVIAVPLGIGAAIYLAEYANGSRftKIIRFAVDILAGVPSIVVGLFGYGFFVLTYLGGGFsllaGALA 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 135 MAHVMLvfPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIA----- 209
Cdd:TIGR00974 135 LALLIL--PVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAggsaf 212

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1183591687 210 APTTI-----TLPVRIYMSMSET---VDPQVAAVATVIMAVTLGLMFALDRLV 254
Cdd:TIGR00974 213 TPPNLfdpfaTLPVLIYNLASEGpyvEAQQLAWAAALVLIVLVLLLNLIARLL 265
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
53-250 3.70e-07

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 50.14  E-value: 3.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  53 VRNPDFTQAFSNSLWLATLSATLAATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVS 132
Cdd:PRK11602   57 LADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLD 136

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 133 ------------LVMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFD 200
Cdd:PRK11602  137 ehnlqlmfswpgMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIG 216

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1183591687 201 ELTATIFIAAPT---TITLPVRIYMSMSE--TVDPQVAAVATVIMA-VTLGLMFAL 250
Cdd:PRK11602  217 EFGAVSVVSGSIrgeTLSLPLQIELLEQDynTVGSFTAAALLTLMAiITLFLKSML 272
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 65-253 6.68e-07

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 49.92  E-value: 6.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  65 SLWLATLSATLAATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVSL----------- 133
Cdd:TIGR01253  52 SFGQAFLSALLSIFFAIFLARALFRKPFLGKKALLKLCALTFILPALVAIFGIIGIYGRQGWLATLANLfglewqfhiyg 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 134 ----VMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFI- 208
Cdd:TIGR01253 132 lqgiLIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASFATVLSLg 211

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1183591687 209 AAPTTITLPVRIYMSMSETVDPQVAAV-ATVIMAVTLGLMFALDRL 253
Cdd:TIGR01253 212 GGPQATTIELAIYQAILFDFDLAKAALfALLQFVCCLGLFLLSQRF 257
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 88-254 2.05e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 46.91  E-value: 2.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  88 MRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSFVSLVMAHVMLVFPYCLRLIMASLVTMTRDAEHAAVSL 167
Cdd:pfam00528  10 LRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARAL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 168 GANAWTTFRRITLPALVPGIAAGWVLGFASSFDELTATIFIAAPTTI--TLPVRIYMSMSETVDPQVAAVATVIMAVTLG 245
Cdd:pfam00528  90 GASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLglLLIEAILGYDYPEIQGPVLAAALILLLLNLL 169


                  ....*....
gi 1183591687 246 LMFALDRLV 254
Cdd:pfam00528 170 VDILQRLLD 178
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 70-195 3.04e-06

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 46.38  E-value: 3.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  70 TLSATL-AATLGVPAALGLMRYRFAGRNAINSLLLSPLMIPPVVLGVALLQLFTRVGVSGSF------VSLVMAHVMLVF 142
Cdd:NF038017    5 SGTATLiAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFLgllytpTAMIIAQAVLAL 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1183591687 143 PYCLRLIMASLVTMTRDAEHAAVSLGANawttfRRITLPALVP----GIAAGWVLGF 195
Cdd:NF038017   85 PIVAGLTLAAVQGLDPELRLQILSLGAT-----RWQALWTLLKearfALLAAVLAGF 136
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 102-247 2.24e-04

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 41.87  E-value: 2.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 102 LLSPLMIPPVVLGVALLQLFTRVGVSGSFVSLVMahvmlVFPYCLRLIMASLVTMTRDAEHAAVSLGANAWTTFRRITLP 181
Cdd:TIGR02138 128 FLKPHFQPFLGSNLGLIPLFGGPILTAGIVLAIM-----ILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILP 202

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1183591687 182 ALVPGIAAGWVLGFASSFDELTATIFIAAPT-----------TITLPVRIYMSMSETVDPQVAAVATVIMAVTLGLM 247
Cdd:TIGR02138 203 AARSGIVGAVVLGLGRALGETMAVTMVIGNVfpisplslfdpGTTITSLIANQFGEASGGSVHTSALFALGLVLFVI 279
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 62-254 7.15e-04

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 40.07  E-value: 7.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687  62 FSNSLWLATLSATLAATLGVPAALGLMRY---RFAGrnainslLLSPLM-----IPPVVLG-------VALLQLFTRVGV 126
Cdd:COG0573    79 IVGTLLVSLIALLIAVPLGLGIAIFLSEYappRLRR-------ILKPAIellagIPSVVYGfwglfvlVPLLRDLFPWPP 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1183591687 127 SGS---FVSLVMAhVMLVfPYclrliMASLvtmTRDA--------EHAAVSLGANAWTTFRRITLPALVPGIAAGWVLGF 195
Cdd:COG0573   152 SGFsllTAGIVLA-IMIL-PT-----ITSL---SRDAlravprslREAALALGATRWETIRKVVLPAARSGIIAAVILGL 221

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1183591687 196 ASSFDELTATIFIAAPTTI----------TLPVRIYMSMSETV--DPQVA---AVATVIMAVTLGLMFALDRLV 254
Cdd:COG0573   222 GRALGETMAVLMVAGNAPQipfslfdpgrTLTALIALEFGEAPfgSLHYSalfALGLVLFVITLLVNLLARLIV 295
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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