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Conserved domains on  [gi|1181493574|ref|YP_009355443|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Synagrops japonicus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475913)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-347 9.79e-174

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 486.23  E-value: 9.79e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   1 MHPTLFLLFATGLALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWD 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  81 MGFWNLDHLTDPLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQLPSFDPFIMLPLCLLS 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 161 ALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFATTFATFLTFKLNDSTTINQLSYSWAKTPVLT 240
Cdd:MTH00135  161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 241 SCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRLAFAMTLTMSHNDTLGVSPWRLSPTQ 320
Cdd:MTH00135  241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320

                         330       340
                  ....*....|....*....|....*..
gi 1181493574 321 DMLILATTITISLLSLPLTPVIVFLLS 347
Cdd:MTH00135  321 LTLPLAISTTATLMLLPLTPAILALLT 347
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-347 9.79e-174

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 486.23  E-value: 9.79e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   1 MHPTLFLLFATGLALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWD 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  81 MGFWNLDHLTDPLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQLPSFDPFIMLPLCLLS 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 161 ALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFATTFATFLTFKLNDSTTINQLSYSWAKTPVLT 240
Cdd:MTH00135  161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 241 SCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRLAFAMTLTMSHNDTLGVSPWRLSPTQ 320
Cdd:MTH00135  241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320

                         330       340
                  ....*....|....*....|....*..
gi 1181493574 321 DMLILATTITISLLSLPLTPVIVFLLS 347
Cdd:MTH00135  321 LTLPLAISTTATLMLLPLTPAILALLT 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 5-345 1.67e-33

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 129.08  E-value: 1.67e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   5 LFLLFATglaLGTITAFSSSHWFLAWMGLEIGTLAILPLMA-QRHHPRGVEAATKYFIVQAIGAAAILF----------- 72
Cdd:COG1007   106 ALLLFAT---LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgs 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  73 -------ATITNGWDMGFWNLdhltdpLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQL 145
Cdd:COG1007   183 lnlagiaAALAAGGANSPLLL------LGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRL 256

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 146 -----PSFDPFIMLPLCLLSAL---VGGWGGMNQTQLRKVLAYSSIAHLGWITLVL----QYSTSFALLALLTYFATTFA 213
Cdd:COG1007   257 lveafPGLAADWQLLLAVLAVLsmtVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLG 336

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 214 TF-----LTFKLNDSTTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLS 288
Cdd:COG1007   337 AFavillLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVIS 416

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1181493574 289 LFFYMRLAFAMTLtmshNDTLGVSPWRLSPTQDMLILATTITISLLSLPLTPVIVFL 345
Cdd:COG1007   417 AYYYLRVVKAMYF----DEPEEEAPISAPPGLRVALVIAALLVLLLGIFPGPLLDLA 469
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-271 3.22e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.86  E-value: 3.22e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  23 SSHWFLAWMGLEIGTLAILPLMA-QRHHPRGVEAATKYFIVQAIGAAAILFATITNGWDMGFWNLDHL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  91 DPLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLIL-STWQKLAPFALLLQLPSFDPF------IMLPLCLLSALV 163
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 164 GGWGGMNQTQLRKVLAYSSIAHLGWITLVL----QYSTSFALLALLTYFATTFATFLTFKL-----NDSTTINQLSYSWA 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1181493574 235 KTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVN 271
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVA 277
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-299 1.27e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 103.87  E-value: 1.27e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   4 TLFLLFATglaLGTITAFSSSHWFLAWMGLEIGTLAILPLMA-QRHHPRGVEAATKYFIVQAIGAAAILF--------AT 74
Cdd:TIGR01770 105 YILLLFAL---LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygfTG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  75 ITNGWDMG-FWNLDHLTDPL--ASAIFTL-GIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQL----- 145
Cdd:TIGR01770 182 SLNFEDLLlFLSNGMLNISLllLGIVLILvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyil 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 146 ----PSFDPFIMLpLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVL----QYSTSFALLALLTYFATTFATFLT 217
Cdd:TIGR01770 262 fgfsEAWQIFLAI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLlagtLEGIKAVLFYIFIYALMSLGAFGV 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 218 F------KLNDSTTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFF 291
Cdd:TIGR01770 341 LsllrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFY 420


                  ....*...
gi 1181493574 292 YMRLAFAM 299
Cdd:TIGR01770 421 YLRVVKVM 428
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-347 9.79e-174

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 486.23  E-value: 9.79e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   1 MHPTLFLLFATGLALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWD 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  81 MGFWNLDHLTDPLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQLPSFDPFIMLPLCLLS 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 161 ALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFATTFATFLTFKLNDSTTINQLSYSWAKTPVLT 240
Cdd:MTH00135  161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 241 SCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRLAFAMTLTMSHNDTLGVSPWRLSPTQ 320
Cdd:MTH00135  241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320

                         330       340
                  ....*....|....*....|....*..
gi 1181493574 321 DMLILATTITISLLSLPLTPVIVFLLS 347
Cdd:MTH00135  321 LTLPLAISTTATLMLLPLTPAILALLT 347
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 1.72e-127

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 368.86  E-value: 1.72e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   1 MHPTLFLLFATGLALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWD 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  81 MGFWNLDHLTDPLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQL-PSFDPFIMLPLCLL 159
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQIsHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 160 SALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFATTFATFLTFKLNDSTTINQLSYSWAKTPVL 239
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 240 TSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRLAFAMTLTMSHNDTLGVSPWRLSpT 319
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK-N 319

                         330       340
                  ....*....|....*....|....*..
gi 1181493574 320 QDMLILATTITISLLSLPLTPVIVFLL 346
Cdd:MTH00070  320 KTNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 1.11e-122

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 356.83  E-value: 1.11e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   1 MHPTLFLLFATGLALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWD 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  81 MGFWNLDHLTDPLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQL-PSFDPFIMLPLCLL 159
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTsNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 160 SALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFATTFATFLTFKLNDSTTINQLSYSWAKTPVL 239
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 240 TSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRLAFAMTLTMSHNDTLGVSPWRLSPT 319
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|...
gi 1181493574 320 QdMLILATTITISLLSLPLTPVI 342
Cdd:MTH00112  321 K-NTLTATLTTLSTLLLPLSPMI 342
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 3.75e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 352.61  E-value: 3.75e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   1 MHPTLFLLFATGLALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWD 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  81 MGFWNLDHLTDPLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQL-PSFDPFIMLPLCLL 159
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQIsPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 160 SALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFATTFATFLTFKLNDSTTINQLSYSWAKTPVL 239
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 240 TSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRLAFAMTLTM--SHNDTlgVSPWRLS 317
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMfpSTNNM--KMKWQFE 318

                         330       340
                  ....*....|....*....|....*...
gi 1181493574 318 PTQDMLILATTITISLLSLPLTPVIVFL 345
Cdd:MTH00105  319 NTKPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 1.36e-102

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 305.74  E-value: 1.36e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   1 MHPTLFLLFATGLALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWD 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  81 MGFWNLDHLTDPLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQL-PSFDPFIMLPLCLL 159
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLaPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 160 SALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFATTFATFLTFKLNDSTTINQLSYSWAKTPVL 239
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 240 TSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRLAFAMTLTMSHNDTLGVSPWRLSPT 319
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*..
gi 1181493574 320 QDmLILATTITISLLSLPLTPVIVFLL 346
Cdd:MTH00200  321 SN-LLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-346 2.71e-89

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 271.80  E-value: 2.71e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   1 MHPTLFLLFATGLALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWD 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  81 MGFWNLDHLTDPLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQLPSFDPFIMLPLC-LL 159
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCgIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 160 SALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFATTFATFLTFKLNDSTTINQLSYSWAKTPVL 239
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 240 TSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRLAFAMTLTMSHNDTLGVSPWRLS-- 317
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSgn 320

                         330       340
                  ....*....|....*....|....*....
gi 1181493574 318 PTQDMLILATTITISLLSLPLTPVIVFLL 346
Cdd:MTH00041  321 ITVYGVILSILSSISILGLLLIPLFLSFL 349
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 7-345 8.18e-65

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 208.52  E-value: 8.18e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   7 LLFATGLALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWDMGFWNl 86
Cdd:MTH00160    8 LLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLFN- 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  87 dhltdPLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQLpsFDPFIMLPLCLLSALVGGW 166
Cdd:MTH00160   87 -----NISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL--INNNFIIIIIILSAIIGAI 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 167 GGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFATTFATFLTFKLNDSTTINQLSYSWAKTPVLTSCLPLI 246
Cdd:MTH00160  160 GGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLN 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 247 MFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRLAFAMtLTMSHNDTLGVSPWRLSPTqdMLILA 326
Cdd:MTH00160  240 LLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNKF--SLILN 316

                         330
                  ....*....|....*....
gi 1181493574 327 TTITISLLSLPLTPVIVFL 345
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 6-318 3.60e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 185.86  E-value: 3.60e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   6 FLLFATGLALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWDMGFWN 85
Cdd:MTH00144    6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  86 LdhltdplaSAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQLPSFDPFIML--PLCLLSALV 163
Cdd:MTH00144   86 S--------MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLlcVISVLSALV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 164 GGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFATTFATFLTFKLNDSTTINQLSYSWAKTPVLTSCL 243
Cdd:MTH00144  158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSII 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1181493574 244 PLIMfSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRLAFAMTLTMSHNDTLGVSPWRLSP 318
Cdd:MTH00144  238 SLLL-SLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSS 311
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-340 4.94e-53

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 177.66  E-value: 4.94e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   1 MHPTLFLLFATgLALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNgwd 80
Cdd:MTH00011    4 TFPTMFLFSST-MTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMM--- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  81 mgfWNLDHLTDPLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQLPSFDPF-IMLPLCLL 159
Cdd:MTH00011   80 ---WSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILpMMTSMAAM 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 160 SALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFATTFATFLTFKLNDSTTINQLSYSWAKTPVL 239
Cdd:MTH00011  157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 240 TSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRLAFAMTLTMSHNDTLGVSPWRLSpt 319
Cdd:MTH00011  237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPK-- 314

                         330       340
                  ....*....|....*....|.
gi 1181493574 320 qdmliLATTITISLLSLPLTP 340
Cdd:MTH00011  315 -----TKILISMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-339 2.83e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 165.23  E-value: 2.83e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   8 LFATGLALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWDMGFWNLD 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  88 HLtdplasaIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQLPSfDPFIMLPLCLLSALVGGWG 167
Cdd:MTH00197   82 VV-------LVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS-SFMGLLICSVLSSLIGGIG 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 168 GMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFATTFATFLTFKLNDSTTINQLSYSWAKTPVLTSCLPLIM 247
Cdd:MTH00197  154 GMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSF 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 248 FSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRLAFAmtlTMSHNDTLGVSPWRLSPTQDMLILAT 327
Cdd:MTH00197  234 LSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYK---SLILSNWMINFLMKINLLYSGLFILL 310

                         330
                  ....*....|..
gi 1181493574 328 TITISLLSLPLT 339
Cdd:MTH00197  311 MMMLPLLMIFTM 322
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 5-345 1.67e-33

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 129.08  E-value: 1.67e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   5 LFLLFATglaLGTITAFSSSHWFLAWMGLEIGTLAILPLMA-QRHHPRGVEAATKYFIVQAIGAAAILF----------- 72
Cdd:COG1007   106 ALLLFAT---LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgs 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  73 -------ATITNGWDMGFWNLdhltdpLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQL 145
Cdd:COG1007   183 lnlagiaAALAAGGANSPLLL------LGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRL 256

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 146 -----PSFDPFIMLPLCLLSAL---VGGWGGMNQTQLRKVLAYSSIAHLGWITLVL----QYSTSFALLALLTYFATTFA 213
Cdd:COG1007   257 lveafPGLAADWQLLLAVLAVLsmtVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLG 336

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 214 TF-----LTFKLNDSTTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLS 288
Cdd:COG1007   337 AFavillLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVIS 416

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1181493574 289 LFFYMRLAFAMTLtmshNDTLGVSPWRLSPTQDMLILATTITISLLSLPLTPVIVFL 345
Cdd:COG1007   417 AYYYLRVVKAMYF----DEPEEEAPISAPPGLRVALVIAALLVLLLGIFPGPLLDLA 469
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-295 5.35e-31

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 120.14  E-value: 5.35e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  13 LALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQ-RHHPRGVEAATKYFIVQAIGAAAILFAT-----ITNGWDMGFWNL 86
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAQnRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgTTGGLHLSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  87 --------DHLTDPLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQLPSFDPFIMLpLCL 158
Cdd:MTH00196   82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLI-GGL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 159 LSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFAT-------TFATFLTFKLNDSTTINQLSY 231
Cdd:MTH00196  161 FSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIyiimsicVFSIILALNVYKNLIIEFSGL 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1181493574 232 SwAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRL 295
Cdd:MTH00196  241 S-RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 4-299 2.63e-28

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 114.09  E-value: 2.63e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   4 TLFLLFATGLALgtitAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWDMGF 83
Cdd:COG0651   111 PLFLLLLAGMNG----AFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGT 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  84 WNLDHL----------TDPLASAIFTLGIALKMGLAPLHTWVPE-----------VLQGLDLTTGL--ILSTWQKLAPFA 140
Cdd:COG0651   187 LNMADLaarlaeldpgLLLAAFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGAD 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 141 LLLQLPsfdpFIMLPLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTY-FATTFATFLTF- 218
Cdd:COG0651   267 PALFLG----TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHlLNHALAKALLFl 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 219 ------KLNDSTTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFY 292
Cdd:COG0651   343 aagaieRATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYF 422


                  ....*..
gi 1181493574 293 MRLAFAM 299
Cdd:COG0651   423 VRIFGRA 429
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
7-337 2.82e-27

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 111.45  E-value: 2.82e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   7 LLFATglaLGTITAFSSSHWFLAWMGLEIGTLAILPLMA-QRHHPRGVEAATKYFIVQAIGAAAIL-------------- 71
Cdd:PRK05777  109 VLFAL---LGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgsls 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  72 FATITNGWDMGFWNLDHLtdpLASAIFTL-GIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQL----- 145
Cdd:PRK05777  186 FAGIAKALADGSGNSLLL---LFGLVFLLvGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvaf 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 146 PSFDPF---IMLPLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVL----QYSTSFALLALLTYFATTFATF--- 215
Cdd:PRK05777  263 GGLSEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLaagtAEGYSAVLFYLLAYLFMTLGAFgvi 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 216 --LTFKLNDSTTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYM 293
Cdd:PRK05777  343 slLRRKGGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYL 422

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1181493574 294 RLAFAMTLTMSHNDTlgVSPWRLSPTQDMLILATTITISLLSLP 337
Cdd:PRK05777  423 RVIKLMYFDEPPRDA--PVNWPLSAGGAVLSVSALLVLVLGIFP 464
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-271 3.22e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.86  E-value: 3.22e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  23 SSHWFLAWMGLEIGTLAILPLMA-QRHHPRGVEAATKYFIVQAIGAAAILFATITNGWDMGFWNLDHL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  91 DPLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLIL-STWQKLAPFALLLQLPSFDPF------IMLPLCLLSALV 163
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 164 GGWGGMNQTQLRKVLAYSSIAHLGWITLVL----QYSTSFALLALLTYFATTFATFLTFKL-----NDSTTINQLSYSWA 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1181493574 235 KTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVN 271
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVA 277
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-295 1.03e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 107.02  E-value: 1.03e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  13 LALGTITAFSSSHWFLAWMGLEIGTLAILPLMA-QRHHPRGVEAATKYFIVQAIGAAAILFA-TITNGW--DMGFWNLDH 88
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGcALLYGLtgETSIQGINS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  89 LTDPLASAIF-TLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQLPSFDPfIMLPLCLLSALVGGWG 167
Cdd:MTH00199  186 ILTGDVGKILiTISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN-VVLICAVLSIIYGAIG 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 168 GMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFAT-------TFATFLTFKLNdSTTINQLSYSWAKTPVLT 240
Cdd:MTH00199  265 ALNQTKIKRLLAYSGIGHMGFILFGVAIGSFESIQASLIYMIIyvimsicSFSIILSLKLT-KGLIVEVSGLSRKNPVIA 343

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1181493574 241 SCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRL 295
Cdd:MTH00199  344 LTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-299 1.27e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 103.87  E-value: 1.27e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   4 TLFLLFATglaLGTITAFSSSHWFLAWMGLEIGTLAILPLMA-QRHHPRGVEAATKYFIVQAIGAAAILF--------AT 74
Cdd:TIGR01770 105 YILLLFAL---LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygfTG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  75 ITNGWDMG-FWNLDHLTDPL--ASAIFTL-GIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQL----- 145
Cdd:TIGR01770 182 SLNFEDLLlFLSNGMLNISLllLGIVLILvGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyil 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 146 ----PSFDPFIMLpLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVL----QYSTSFALLALLTYFATTFATFLT 217
Cdd:TIGR01770 262 fgfsEAWQIFLAI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLlagtLEGIKAVLFYIFIYALMSLGAFGV 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 218 F------KLNDSTTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFF 291
Cdd:TIGR01770 341 LsllrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFY 420


                  ....*...
gi 1181493574 292 YMRLAFAM 299
Cdd:TIGR01770 421 YLRVVKVM 428
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 13-295 1.54e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 86.84  E-value: 1.54e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  13 LALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGV---------EAATKYFIVQAIGAAAILFA---------- 73
Cdd:MTH00198  197 VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGcalyfgftgn 276

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  74 -----TITNGwDMGFWNLDHLTDPLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQLpSF 148
Cdd:MTH00198  277 egmlgTILSA-TLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSL-VI 354

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 149 DPFIMLPLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLA----LLTYFATTFATFLTF-KLNDS 223
Cdd:MTH00198  355 TSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQAswtyAVTYLVSALASFTVIcTLEEF 434

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 224 TTINQ--------------------LSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFS-------L 276
Cdd:MTH00198  435 GTRTPtsrqrdgsfgnynlvrrlvdLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSsslsiyyL 514

                         330
                  ....*....|....*....
gi 1181493574 277 VATLMALTALLSLFFYMRL 295
Cdd:MTH00198  515 VALFAIICTCISAFYYIRI 533
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-299 1.67e-17

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 83.18  E-value: 1.67e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  50 PRGVEAATKYFIVQAIGAAAILF-ATITNGWDMGFWNLDHLTDPLASA---------IFTL-GIALKMGLAPLHTWVPEV 118
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALITSpslglalalVFVIaGIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 119 LQGLDLTTGLILSTWQKLAPFALLLQL-----PSFDP---FIMLPLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWIT 190
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAGFALAIRLlvtafPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 191 LVLQYSTSFALLALLTYFAT-------TFATFLTFKLNDST-TINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPK 262
Cdd:PRK02504  317 IGLVAGTEAGYASMVFYLLAylfmnlgAFACVILFSLRTGTdQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1181493574 263 -WLILQTLVNHDFSLVaTLMALTALLSLFFYMRLAFAM 299
Cdd:PRK02504  397 iYLFWAGWQAGLYLLV-LVGLVTSVISIYYYIRVIKMM 433
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 44-348 1.16e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 77.70  E-value: 1.16e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  44 MAQRHHPRGVEAATKYFIVQAIG------AAAILFATI-----------TNGWDMGFWNLDHLTDPLASAIFtLGIAL-- 104
Cdd:PRK12667  154 AYYRDRGDAVEAAIKYALIGAVGttlyflALAFLYATFgtlnmadlsakIRGLSFPLTGGLAGNPPLALGVA-LALALwa 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 105 ---KMGLAPLHTWVPEV-----------LQGLDLTTG---------LILSTWQKLAPFALLLQlpsfdpFIMLPLCLLSA 161
Cdd:PRK12667  233 ftiKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAALS------PILIILGAVSA 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 162 LVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFAT-TFATFLTF-------KLNDSTTINQLSYSW 233
Cdd:PRK12667  307 IIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINhAIAKSLLFlasgvfiHAAGTRDIDELAGLG 386

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 234 AKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRLAFAMTLTMSHNDTLGVSp 313
Cdd:PRK12667  387 RKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVEH- 465

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1181493574 314 wRLSPTQDMLILATTITISLLSLPLTPVIVFLLSR 348
Cdd:PRK12667  466 -KESPSMSVVILVLALAVLILGILALFLPEILDSL 499
ndhB CHL00049
NADH dehydrogenase subunit 2
 93-295 8.01e-14

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 71.96  E-value: 8.01e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  93 LASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQL-----PSFDP---FIMLPLCLLSALVG 164
Cdd:CHL00049  215 IALIFITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIfdipfYFSSNewhLLLEILAILSMILG 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 165 GWGGMNQTQLRKVLAYSSIAHLGWITL-VLQYSTSFALLALLTYFAT-------TFATFLTFKLNDST-TINQLSYSWAK 235
Cdd:CHL00049  295 NLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNDGYASMITYMLFyifmnlgTFACIVLFGLRTGTdNIRDYAGLYTK 374

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 236 TPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRL 295
Cdd:CHL00049  375 DPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-295 5.27e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 69.52  E-value: 5.27e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   3 PTLFLLFATGLalgtITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWDMG 82
Cdd:PRK08375  109 YALFLLLLAGL----LGALLTADLFNLFVFLEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTG 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  83 FWNLDHLTDPLAS--------AIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILS-TWQKLAPFAL---LLQLPSFDP 150
Cdd:PRK08375  185 TLNMADLAGALAEnptvvtafGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKVAVYALiriYFTVFGGDF 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 151 F-------IMLPLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTY-----------FATTF 212
Cdd:PRK08375  265 RfalglgwLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHllhhalmkgalFLAAG 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 213 ATFLTFKlndSTTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFY 292
Cdd:PRK08375  345 AIEVTYG---TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYF 421


                  ...
gi 1181493574 293 MRL 295
Cdd:PRK08375  422 LRI 424
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-297 2.34e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 67.80  E-value: 2.34e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  49 HPRGVEAATKYFIVQAIGAAAILFATITNGWDMGFWNLD-------HLTDPLASAIFT---LGIALKMGLAPLHTWVPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDiaelaaaPLPLTAQLLLFLaffIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 119 LQ-----GLDLTTGLILstwqKLAPFALL-LQLP-------SFDPFIMLpLCLLSALVGGWGGMNQTQLRKVLAYSSIAH 185
Cdd:COG1008   236 HVeaptaGSVLLAGVLL----KMGGYGLLrFALPlfpeasaYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSH 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 186 LGWITLVLQYSTSFALL-ALLTYFATTFATFLTFKL-------NDSTTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLF 257
Cdd:COG1008   311 MGFVLLGIFALNPLGLQgAVLQMVSHGLITAALFLLvgvlydrTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTS 390

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1181493574 258 GFTPKWLILQTL--VNHDFSLVATL-MALTALLSLFFYMRLAF 297
Cdd:COG1008   391 GFVGEFLVLLGAfqVNPWLAILAALgLILTAAYLLWMYQRVFF 433
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 5-294 2.34e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 64.63  E-value: 2.34e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   5 LFLLFATGLALGTITAFSSSHWFLAWmglEIGTLAILpLMAQRHHPRGVEAATKYFIVQAIGAAAILFAT---------- 74
Cdd:PRK08668  102 MFALMSLAGVLGVFLANDLLTLYIFW---EIMTFSSF-MMVPMGKKESRKASLKYFVLSAIGAYAMLYAIfliyaktgtf 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  75 ITNGWDMGFWNLDHLTDPLASAIFTLGIAL-KMGLAPLHTWVPEVLQGLDLTTGLILS-TWQKLAPFALLLQL------- 145
Cdd:PRK08668  178 DFADISQGLINDTSTGFALIVFLFLLAFGVaKAGIFPLHVWAPDAYSEAPQSFSAVLSgQLSKLGAYGFLLVLyvlpgtk 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 146 --PSFDPFIMLP--------LCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTY------FA 209
Cdd:PRK08668  258 lfSEFGTYRGVPlfnyilawLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHvfnhalFK 337

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 210 TTFatFLTFKL----NDSTTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTA 285
Cdd:PRK08668  338 GLF--FLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGS 415


                  ....*....
gi 1181493574 286 LLSLFFYMR 294
Cdd:PRK08668  416 IGSFLYVFR 424
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 16-297 3.65e-11

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 63.81  E-value: 3.65e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  16 GTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWDMG--FWNLDHLTDPL 93
Cdd:TIGR01972 118 GVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtFDLLELLNLPL 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  94 ASAI-------FTLGIALKMGLAPLHTWVPEV-LQGLDLTTGLILSTWQKLAPFALL-LQLP-------SFDPFIMLpLC 157
Cdd:TIGR01972 198 PFGVqtwlflaFFIAFAVKVPLFPLHTWLPDAhVEAPTAGSVILAGVLLKMGTYGFLrFNLPlfpdaslYFAPVLAA-LG 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 158 LLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVL----QYSTSFALLALLTYFATTFATFL----TFKLNDSTTINQL 229
Cdd:TIGR01972 277 VIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIfsfnELGISGAVFQMISHGLITAALFLlvgvLYERAHTRDIAKY 356

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1181493574 230 SYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTL--VNHDFSLVATL-MALTALLSLFFYMRLAF 297
Cdd:TIGR01972 357 GGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSfkVNPVVAFLAALgIVLAAAYMLTLYKRVFF 427
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 55-286 8.18e-11

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 63.40  E-value: 8.18e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  55 AATKYFIVQAIGAAAILFATITNGWDMGFWNL-DHLTDPLASAIFTLGIAL-------KMGLAPLHTWVPE--------- 117
Cdd:PRK12644  158 AALQALLVTTAGGLAMLVGIIILGQAAGTYRLsELLADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGamaaptpvs 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 118 --------VLQGLDLTTglilstwqKLAP-FAlllQLPSFDPfIMLPLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGW 188
Cdd:PRK12644  238 aylhaaamVKAGIYLVA--------RLAPgFA---DVPVWRP-TVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGF 305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 189 ITLVLQYSTSFALLA---LLTYFATTFAT-FLTFKLNDSTT----INQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFT 260
Cdd:PRK12644  306 LTVLVGIGTRDAALAglaMLLAHALFKAAlFLVVGIIDHSTgtrdIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFV 385

                         250       260
                  ....*....|....*....|....*.
gi 1181493574 261 PKWLILQTLVNHDFSLVATLMALTAL 286
Cdd:PRK12644  386 AKEAALEAVLHDGALGPAGPVVLAGI 411
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 290-340 1.40e-09

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 53.03  E-value: 1.40e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1181493574 290 FFYMRLAFAMTLTMSHNDTLGVSPWRLSPTQDMLILATTITISLLSLPLTP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-342 1.44e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 58.98  E-value: 1.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   4 TLFLLFATGLaLGTITafsSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFA-----TITNG 78
Cdd:PRK12662  114 SAFLLCLGGL-LGILV---SNDVFNIYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGT 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  79 WDMG--FWNLDHLTDPLASAIFTL----GIALKMGLAPLHTWVPEVLQGLDLTTGLILS-TWQKLAPFAL---------- 141
Cdd:PRK12662  190 LNMGdmFLIIQDLPTNRAIQIGVLfimvGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYLIirivydvfka 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 142 ---LLQLPsFDpFIMLPLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYF-------ATT 211
Cdd:PRK12662  270 nfvFTTLP-FN-NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsivkSAL 347

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 212 FATFLTFKLN-DSTTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLF 290
Cdd:PRK12662  348 FMVSGSISYHfGTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVI 427

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1181493574 291 FYMRLAFAMTLTMSHNDTLGVSPWRLSP---TQDMLILAT-TITISLLSLPLTPVI 342
Cdd:PRK12662  428 YVWKIVEALYFESRMVESKANDKAFKTPnamVLCIWIMAIlSIIVGIYPIPLTLIS 483
PRK12650 PRK12650
DUF4040 family protein;
27-298 3.73e-09

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 58.13  E-value: 3.73e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  27 FLAWmglEIGTLAILPLMAqRHHPRGVEAATKYFIVQAIGAAAILFATITNGWDMGFWNLDH-LTDPLAS--AIFTLGIA 103
Cdd:PRK12650  136 FVAW---ELVSLASFFLIA-RSGSGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGiLHSDVWAekPGLTTVVA 211

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 104 LKMGLA--------PLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQlpsFDPF--------IMLPLC-LLSALVGGW 166
Cdd:PRK12650  212 VLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLR---FSPVfhdvavwnWLLIIVgMITALMGAV 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 167 GGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFAT----TFATFLTFKLNDSTT----INQLSYSWAKTPV 238
Cdd:PRK12650  289 FAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAhalfKSSLFMLIGVVDHQAgtrdIRRLGSLWRRMPF 368

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1181493574 239 LTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFS-----LVATLMALTALLSLFFYMRLAFA 298
Cdd:PRK12650  369 TFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGnagvvLLLVGAALGAVFTFAYSARLVLG 433
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-297 2.54e-08

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 55.54  E-value: 2.54e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  48 HHPRGVEAATKYFIVQAIGAAAILFATITNGWDMGFWNLDHL----TDPLASAIFTLGIAL-------KMGLAPLHTWVP 116
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaPTILSSPLLTLILLLlllgafgKSAQFPLHFWLP 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 117 EVLQG-----------LDLTTGLILstwqkLAPFALLLQLPSFDPFIMLPLCLLSALVGGWGGMNQTQLRKVLAYSSIAH 185
Cdd:COG1009   236 DAMEGptpvsallhaaTMVKAGVYL-----LARLSPLFALSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQ 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 186 LGWITLVLQYS-TSFALLALLTYfATTFAT-FLTFKLNDSTT----INQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGF 259
Cdd:COG1009   311 LGYMFLALGVGaYVAALFHLLTH-AFFKALlFLGAGSVIHATgtrdIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGF 389

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1181493574 260 TPKWLILQ-TLVNHDFSLVATLMA-LTALLSLFFYMRLAF 297
Cdd:COG1009   390 FSKEAILEaALEAGGLGPLLLAVAlLGAFLTAFYSFRLFF 429
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-338 3.39e-08

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 54.94  E-value: 3.39e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  20 AFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATI----------TNGWDMGFWNL--- 86
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyanaatvmGDGEMAILWTEllk 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  87 -DHLTDP----LASAIFTLGIALKMGLAPLHTWVPE-----------VLQGLDLTTGL-ILSTWQKLAPFALLLQLPsfd 149
Cdd:PRK06458  204 hASLLDPtlmkLAFVFLLIGFGTKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyAVLRYYILIDAAIGSDFP--- 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 150 PFIMLPLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVL----QYSTSFALLALLTYFATTFATFLT----FKLN 221
Cdd:PRK06458  281 GRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALgiggPLGIFAALLHMLNHSLTKSAIFFAsgnvLQKY 360

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 222 DSTTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDfslvatLMALTALLSLFFYmrLAFAMTL 301
Cdd:PRK06458  361 GTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARG------PLLIAILLLLLLT--LAFAALV 432

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1181493574 302 TMSHNDTLGVSPWRLSPTQDMlILATTITISLLSLPL 338
Cdd:PRK06458  433 RRVAGMVFGEPPEAVNRGDLG-WLTTSPMFVHLVLVL 468
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-299 3.70e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 51.64  E-value: 3.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  33 LEIGTLAILPLMAQRHH-PRGVEAATKYFIVQAIGAAAILFATITNGWDMGFWNLDHL----------TDPLASAIFTLG 101
Cdd:PRK08376  150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLavkmsenptvVAKIALALFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 102 IALKMGLAPLHTWVPEVLQGL--DLTTGLILSTWQKL-APFALLLQL--PSFDPF----IMLPLCLLSALVGGWGGMNQT 172
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAApsSISAMLLVIKQAGLyALARVLFSIygPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 173 QLRKVLAYSSIAHLGWITLVL-----------QYSTSFALLALLTYFATTFAT-----FLT----FKLNDSTTINQLSYS 232
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMLLGLgvglaalgdpaMASYGEIALAGGIYHIVNHALykallFLTagavIYETGTRNLNELGGL 389

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1181493574 233 WAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTAlLSLFFYMRLAFAM 299
Cdd:PRK08376  390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNPILGVIAMIGSV-LTLASFVKVFHTA 455
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 5-299 1.45e-06

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 49.77  E-value: 1.45e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   5 LFLLfatgLALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWDMGFW 84
Cdd:PRK08377  113 LFLL----LMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTL 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  85 NLDHLT------DPLAS----AIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILSTW-QKLAPFA------LLLQLPS 147
Cdd:PRK08377  189 NMAHIAqlagtiDPTVAqvglALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFvVKAGLYAmarilyLMQNANG 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 148 FDPFI--MLPLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTS-------FALLALLTYFATTF--ATFL 216
Cdd:PRK08377  269 WSSVLklVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQagvdagvFHMINHAIVKALLFlaVGYV 348

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 217 TFKLNdSTTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRLA 296
Cdd:PRK08377  349 GITLG-GTEIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRLI 427


                  ...
gi 1181493574 297 FAM 299
Cdd:PRK08377  428 HTM 430
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
13-203 1.79e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 49.31  E-value: 1.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  13 LALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWDMGFWNLDH---- 88
Cdd:PRK06473  116 LNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYeplr 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  89 -LTDPLASAIFTL-----GIALKMGLAPLHTWVPE-----------VLQG--LDLTT--------GLILSTWQKLAPFal 141
Cdd:PRK06473  196 sHTLPLSTQLLLLapilvGFGIKIPLVPFHTWLPDahveastpvsvLLAGvlLKLGTygllrfgvGLFPEAWVYLAPW-- 273

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1181493574 142 llqlpsfdpfiMLPLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLA 203
Cdd:PRK06473  274 -----------LATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILA 324
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-270 3.01e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 48.79  E-value: 3.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   4 TLFLLFATGLALGTI-TAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWDMG 82
Cdd:PRK07234   93 TRFFYAQLLILHGSVnAAFVCADLISLYVALEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANG 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  83 FWNLDHLT--DPLASAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLILS-TWQKLAPFALL-LQLPSFDPFIMLPL-C 157
Cdd:PRK07234  173 TFAFSGLAtaDPEAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSgVVVKAGVFPLVrCALDVPGLDLIVRIfG 252

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 158 LLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQ----YSTSFALLALLTYFATTFATFLTFKLNDSTTINQLSYsw 233
Cdd:PRK07234  253 VGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLvgglYALAHGLVKSTLFLCAGALPSRNFTELISQMLGIGKW-- 330

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1181493574 234 aktpvltscLPLIM--FSLAGLPPLFGFTPKWLILQTLV 270
Cdd:PRK07234  331 ---------IPLTMasFSIAGFPLLAGFVSKVLTLKNLL 360
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
54-301 3.05e-06

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 48.87  E-value: 3.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  54 EAATKYFIVQAIGAA------AILFATI--TNGWDMGFWNLDHLTDPL---ASAIFTLGIALKMGLAPLHTWVPEVLQGL 122
Cdd:PRK06277  150 KAALKYMILGNVAGSilllgiGFLLASTgtLNITDIHNALLVNPTSPViygGLLLLIFGLLYGSGLPPFHTIKSDIYAKA 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 123 DLTTGLILSTWQKLAPFALLL-------QLPSFDPF--IMLPLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVL 193
Cdd:PRK06277  230 KPFGSALLQTFSKFVLVALMLvifklfgGLSYFPSAqgVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 194 QYSTSFALLALL-------TYFATTFATF-LTFKLNDSTTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLI 265
Cdd:PRK06277  310 ALGTPLGIVAGIfhainhvIYKSALFLGAgIVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLML 389

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1181493574 266 LQTLVNHDFSLVATLMALTALLSLFFYMRLAFAMTL 301
Cdd:PRK06277  390 AQAAMQANMPELAIIMIIVSIGTFVSMMKAFYLIYL 425
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 6-267 7.41e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 47.65  E-value: 7.41e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   6 FLLFATGLALGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRgvEAATKYFIVQAIGAAAIL-------------- 71
Cdd:MTH00032  116 YLSLFTFLMMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWTTRIQAN--KAAIKAIVVNRVGDVGVIlgmvliyktigsld 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  72 FATITNGW------DMGFWNLDHLTDPLA-----SAIFTLGIALKMGLAPLHTWVPEVLQGLDLTTGLI-LSTWQKLAPF 139
Cdd:MTH00032  194 FLTFNGGSvgsgimDRGYYGGGAYESPLApfaiiGILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIhAATMVTAGVF 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 140 ALLLQLPSFD--PFIMLPLCLLSALVGGWG---GMNQTQLRKVLAYSSIAHLGWITLVLQYSTS-----FALL------A 203
Cdd:MTH00032  274 LMIRSFPLFEkaPLTLLIITIFGALTAFFAatvGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGShnvglFHLVnhaffkA 353

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1181493574 204 LLTYFATTFATFLTFKLNDSTTINQLSYSwakTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQ 267
Cdd:MTH00032  354 LLFLSAGSVIHSTTVDEQDMRKMGGLIHS---IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 111-297 2.05e-05

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 46.22  E-value: 2.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 111 LHTWVPEVLQGLDLTTGLI-LSTWQKLAPFALLLQLPSFD--PFIMLPLCL---LSALVGGWGGMNQTQLRKVLAYSSIA 184
Cdd:MTH00020  229 LHTWLPDAMEGPTPVSALIhAATMVTAGVFLLIRSSPLFEqaPLALIIVTIvgsLTVFFAATVGLVQNDLKKVIAYSTCS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 185 HLGWitLVLQYSTSFALLALLTYFATTFATFLTFkLNDSTTINQLS--YSWAKTPVLTSCLPLIM-------FSLAGLPP 255
Cdd:MTH00020  309 QLGY--MVVACGLSHYSISLFHLMNHAFFKALLF-LSAGSVIHALSdeQDMRKMGGLISFLPLTYiffligsLSLMGFPY 385

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1181493574 256 LFGFTPKWLILQ-TLVNHDFSLVATLMALTALLSLFFYMRLAF 297
Cdd:MTH00020  386 LTGFYSKDLILElAFGQYYLIFAYWLGCFSALLTAFYSIRLIY 428
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 162-298 4.60e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 45.30  E-value: 4.60e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 162 LVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYF-ATTF---ATFLTFKLNDSTT----INQLSYSW 233
Cdd:PRK12647  271 LTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLvAHSLykgALFMVAGIIDHETgtrdITKLGGLR 350

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1181493574 234 AKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVnhDFSLVATLMALTALLSLFFYMRLAFA 298
Cdd:PRK12647  351 RAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLGNALMVAVAFL 413
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 16-191 5.26e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.81  E-value: 5.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  16 GTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFATITNGWDMG-----FWNLDHLT 90
Cdd:PRK05846  123 GVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAIIYLVVVYYnatgtFDIADLLN 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  91 DPLASAI-------FTLGIALKMGLAPLHTWVPEVLQ-----GLDLTTGLILstwqKLAPFALL-LQLP-------SFDP 150
Cdd:PRK05846  203 LPLPPGVqywlflaFFIAFAVKMPMFPLHTWLPDAHVqaptaGSVLLAGILL----KMGAYGLLrFSLPlfpdashEFAP 278

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1181493574 151 FIMLpLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITL 191
Cdd:PRK05846  279 IIIT-LGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTL 318
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
 7-295 5.99e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 44.77  E-value: 5.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   7 LLFATGLALGTItafSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQAIGAAAILFA-----TITNGWDM 81
Cdd:PRK06591  121 LLFAHTGYLGMI---ATNDFFNLYVFIEISALSSYVLIASGNNPKSLIGAFDYLIMGSIGATLILIAigfllSITGSLNM 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  82 ----GFWNLDHLTDPLASAI--FTLGIALKMGLAPLHTWvpeVLQGLDLTTGLILSTwqkLAPFALLLQLPSFDPFIML- 154
Cdd:PRK06591  198 tdiaAYLQEHTNSRIITIAIgfFLIGAILKTAFFPMHFW---MMRAYNNTASVILVY---LAGISTIIGIYIIYKFTYIi 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 155 ---------------PLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLA--LLTYFATTFATFLT 217
Cdd:PRK06591  272 igyetiktaitnfirPIALATLIIAPYFAYQAKNFKNIIIYSCFTQIGYVFLLYVTENGIIILPslLLADSINKIALFLI 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1181493574 218 FKLNDsttinqlSYSWAKTPVLTSclpLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRL 295
Cdd:PRK06591  352 DAYNE-------SYKREPNKVLII---IAIICSCGLPISPLFFIKVNILELLLTQNLLLDFIIILLSSVGSLFYHYKM 419
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-267 7.57e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 44.32  E-value: 7.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  55 AATKYFIVQAIGAAAILFATITNGWDMGFWNLDHltDPLASAIFT------------LGIALKMGLAPLHTWVPEVLQGL 122
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDY--DAISTQNLSlntqlilltgllLGFGIKIPLVPLHTWLPDAYTEA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 123 DLTTGLILS-TWQKLAPFALL---LQL-PSFDPFIMLPLCL---LSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQ 194
Cdd:PRK07363  236 SPAVAILLGgVLAKLGTYGLLrfgLQLfPQTWSLVAPGLAIigtISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAA 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 195 YSTSFALL-ALLTYFATTFATFLTFKL----------NDSTTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKW 263
Cdd:PRK07363  316 AGTQLSLLgAVAQMISHGLILALLFHLvgiverkvgtRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEF 395


                  ....
gi 1181493574 264 LILQ 267
Cdd:PRK07363  396 IVFQ 399
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 146-295 2.74e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 42.63  E-value: 2.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 146 PSFDPFIMLPLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFATTF----ATFL----T 217
Cdd:PRK07691  271 TSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMivkaALFLligiM 350

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1181493574 218 FKLNDSTTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRL 295
Cdd:PRK07691  351 IKITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 44-288 5.31e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 41.80  E-value: 5.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  44 MAQRHHPRGVEAATKYFIVQAIGAAAI-----LFATITNGWDMGFWNLDHLTDPLASAIFTL---GIALKMGLAPLHTWV 115
Cdd:PRK06521  154 IANHREAEIRRAGFLYLLMAHAGALAIllafgLLARESGSYDFAAMRAAHLSPFWASLVFLLalfGFGAKAGLVPLHVWL 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 116 PE-----------VLQGLDLTTGL--ILSTwqklaPFALLLQLPSFDPFIMLPLCLLSALVGGWGGMNQTQLRKVLAYSS 182
Cdd:PRK06521  234 PRahpaapshvsaLMSGVMLKVAIygILRV-----VFDLLGAPGWWWGVLVLALGAISAVLGVLYALAEHDLKRLLAYST 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 183 IAHLGWITLVLQYSTSF-----------ALLALLtYFATTFATF--LTFkLNDSTTINQLS-------------YSWAKT 236
Cdd:PRK06521  309 IENIGIIFVGLGLAMVFiaygmpllaalALTAAL-YHLLNHALFksLLF-LGAGAVLHATGtrdmeklgglirrMPWTAW 386

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1181493574 237 PVLTSCLplimfSLAGLPPLFGFTPKWLILQTL----------VNHDFSLVATLMALTALLS 288
Cdd:PRK06521  387 AFLIGCL-----AISALPPLNGFVSEWLLLQSLlsspglpqwgLKLAVPIAAAMLALTAALA 443
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
151-299 5.95e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 41.47  E-value: 5.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 151 FIMLPLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFATTFA--TFLTF------KLND 222
Cdd:PRK12663  273 PLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVvkTALFLiagslvRLTG 352

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1181493574 223 STTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMALTALLSLFFYMRLAFAM 299
Cdd:PRK12663  353 YRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLA 429
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 80-271 6.87e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 41.35  E-value: 6.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  80 DMGFWNLDHLTDPLASAIFTLGIA---LKMGLAPLHTWVPEVLQGLDLTTGLILSTW-QKLAPFALLL------QLPSFD 149
Cdd:PRK08042  165 DLRLLDMRMQQLPLGSDIWLLGVIgfgLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTlsllggNAPLWW 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 150 PFIMLPLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFATTFATFLTFKLNDS------ 223
Cdd:PRK08042  245 GVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSlfksvl 324

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1181493574 224 -------------TTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVN 271
Cdd:PRK08042  325 flgagsvwfrtghRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-290 7.78e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 41.11  E-value: 7.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   2 HPTLFLLFAtglalGTITAFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKYFIVQA-------IGAAAILFAT 74
Cdd:PRK12665  114 LPTYLILVA-----GVSNAFLAGDLFNLYVGFEILLVASYVLLTLGATAARVRAGVTYVMVSMvssllflIGIALVYAAT 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  75 IT-NGWDMGFwNLDHLTDPLASAIFTL---GIALKMGLAPLHTWVPE-----------VLQGLDLTTGL--ILSTwqkla 137
Cdd:PRK12665  189 GTlNMADLAV-RLDELPSGTRTALFAVllvAFGIKAAVFPLSFWLPDsyptapapvtaVFAGLLTKVGVyaIIRT----- 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 138 pFALLLQLPSFDPFIMLpLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFA-------T 210
Cdd:PRK12665  263 -HTLLFPGGGLDTLLMV-VALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAhhitvqtT 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 211 TF-ATFLTFKLNDSTTINQLSYSWAKTPVLTSCLPLIMFSLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMA---LTAL 286
Cdd:PRK12665  341 LFlVVGLIERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAEDGTWLAWALVAggvVTSL 420


                  ....
gi 1181493574 287 LSLF 290
Cdd:PRK12665  421 LTLY 424
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 168-329 1.38e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 40.57  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 168 GMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTYFAT-TFATFLTFKLNDSTTINQLSYSWAKTPVLTSCLPLI 246
Cdd:PRK06589  298 ALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVShSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLI 377

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 247 MF-------SLAGLPPLFGFTPKWLILQTLVNHDFSLVATLMAL-----TALLSLFFYMRLAFAMTLTMSHNDTLGVS-P 313
Cdd:PRK06589  378 SFiisisslSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLvviasSILSALYLLKILSSIYKPSLSENSFITKSlP 457

                         170
                  ....*....|....*.
gi 1181493574 314 WRLSPTQDMLILATTI 329
Cdd:PRK06589  458 YLMQISVITCCCALTL 473
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 104-291 1.39e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 39.85  E-value: 1.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 104 LKMGLAPLHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQLPSFDPFIMLPLCLLSALVGGWGGMNqtqLRKVLAYSSI 183
Cdd:MTH00091   69 MKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQMFLLKS---YKNLLILSST 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 184 AHLGWITLVLQYSTSFALLALLTYFATTFatFLTFKLNDSTTINQLSYswaktpvltsclpLIMFSLAGLPPLFGFTPKW 263
Cdd:MTH00091  146 ESFNWLILSFFFSFFNVFFLFFYYFLLML--FLIPKFNNVNKLNFVSW-------------ETLLVFMNLPFSVTFFVKI 210

                         170       180
                  ....*....|....*....|....*...
gi 1181493574 264 LILQTLVNHDFSLVATLMALTALLSLFF 291
Cdd:MTH00091  211 FSLSEILKVLGFFLLFLLFLMFLSVLSL 238
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 9-207 1.63e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 40.12  E-value: 1.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574   9 FATGLALGTIT-AFSSSHWFLAWMGLEIGTLAILPLMAQRHHPRGVEAATKY-FIVQ-----AIGAAAILFATITNGWDM 81
Cdd:PRK08676  106 LGFNLLLSVITfAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYiFIAStamifAFIGLIFLFSLTRQALGT 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  82 GFWNLDHLTDP---------LASAIFTL-GIALKMGLAPLHTWVPE-----------VLQGLDLTTGLilstWQKLAPFA 140
Cdd:PRK08676  186 GTLNWTELAAHasllspsvlGASFLFIFiGFLAKSGLVPFHTWLPAayakapsvvsaLLSGTVLNIGI----YGILRLSA 261

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1181493574 141 LLLQLPSFDPF--IMLPLCLLSALVGGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLALLTY 207
Cdd:PRK08676  262 LLRQSGAAEQFsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFH 330
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 111-302 2.72e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 39.61  E-value: 2.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 111 LHTWVPEVLQGLDLTTGLILSTWQKLAPFALLLQlpSFDPFIMLPLCL--------LSALVGGWGGMNQTQLRKVLAYSS 182
Cdd:MTH00210  230 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLIIR--SGPLFEGSPLALtivtilgaLTAFFAATVGVVQNDLKKVIAYST 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574 183 IAHLGWITLV---LQYSTSFALLALLTYF-ATTF--ATFLTFKLNDSTTINQLSySWAKTPVLTSCLPLI-MFSLAGLPP 255
Cdd:MTH00210  308 CSQLGYMVMVcgiSNYSTSLFHLMNHAFFkALLFlsAGSVIHAVSDEQDMRKMG-GLIKSIPFTYVMILIgSLSLMGFPY 386

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1181493574 256 LFGFTPKWLILQTLVNHDFSLVAT-LMALTALLSLFFYMRLAFAMTLT 302
Cdd:MTH00210  387 LTGFYSKDLILELTYDKYYIAFAYwLGSFSALLTAFYSIRLIYLTFIT 434
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 98-203 7.56e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 38.11  E-value: 7.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1181493574  98 FTLGIALKMGLAPLHTWVPE-----------VLQGLDLTTG---LILSTWqKLAPFALllqlPSFDPFImLPLCLLSALV 163
Cdd:MTH00217  212 FFLSLAIKIPKIPFHIWLPQahveapvagsvILAGVLLKLGgygFIRFSW-PLLPEAS----EYFSPLI-QTLSLLAIIY 285

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1181493574 164 GGWGGMNQTQLRKVLAYSSIAHLGWITLVLQYSTSFALLA 203
Cdd:MTH00217  286 GSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVA 325
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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