|
Name |
Accession |
Description |
Interval |
E-value |
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
12-295 |
1.72e-95 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 283.54 E-value: 1.72e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 12 LSEFWKAFRRNKLGLVGGFLILTALLAAIFAPALTPHSAVDImrdsnGRALTFASPATHSPLGTDDAGHDIWALLIYGAR 91
Cdd:COG1173 5 WRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQ-----DLAARLQPPSAAHWLGTDQLGRDVLSRLLYGAR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 92 ISLMVGFLAGFISMFVGSSLGIIAGYFGGAVDTLVMRVTDILMVIPDLPLMLVLVATIRQmdlkvsPLSVLILVIGLLYW 171
Cdd:COG1173 80 ISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGP------GLLNVILALGLTGW 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 172 TSAARLIRSQTLTIKERQFVARARAIGAGHWHIIRKHILPQLMPLIVTNTVLILSTAILIESGLAFLGLG-DPTQPSWGT 250
Cdd:COG1173 154 PGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGvQPPTPSWGT 233
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1176773522 251 MLNFAfsRSAISNgAWWFYLPPGIAILWVSLGCILLGNVLEEMMN 295
Cdd:COG1173 234 MLSEG--RNYLLT-APWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
12-298 |
1.29e-49 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 167.27 E-value: 1.29e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 12 LSEFWKAFRRNKLGLVGGFLILTALLAAIFAPALTPHSAVDIMRDSNGRALTFASPATHS-PLGTDDAGHDIWALLIYGA 90
Cdd:PRK10913 19 LQEFWHYFKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQFRDALLAPPVWQEGGSWAhILGTDDVGRDVLSRLMYGA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 91 RISLMVGFLAGFISMFVGSSLGIIAGYFGGAVDTLVMRVTDILMVIPDLPLMLVLVATIRQMDLKVSplsvliLVIGLLY 170
Cdd:PRK10913 99 RLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIVNAA------LALTFVA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 171 WTSAARLIRSQTLTIKERQFVARARAIGAGHWHIIRKHILPQ-LMPLIVTNTvLILSTAILIESGLAFLGLG-DPTQPSW 248
Cdd:PRK10913 173 LPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNcLAPLIVQAS-LGFSNAILDMAALGFLGMGaQPPTPEW 251
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1176773522 249 GTMLN--FAFSRSaisngAWWFYLPPGIAILWVSLGCILLGNVLEEMMNPRL 298
Cdd:PRK10913 252 GTMLSdvLQFAQS-----AWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKL 298
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
90-261 |
1.91e-19 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 84.25 E-value: 1.91e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 90 ARISLMVGFLAGFISMFVGSSLGIIAGYFGGAVDTLVMRVTDILMVIPDLPLMLVLVATIRQM--DLKVSPLSVLILVIG 167
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLlgWGILPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 168 LLYWTSAARLIRSQTLTIKERQFVARARAIGAGHWHIIRKHILPQLMPLIVTNTVLILSTAILIESGLAFLGLGDPTQPS 247
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160
|
170
....*....|....
gi 1176773522 248 WGTMLNFAFSRSAI 261
Cdd:cd06261 161 TGLLLIFAILFPGD 174
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
108-261 |
1.44e-15 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 73.49 E-value: 1.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 108 GSSLGIIAG-YFGGAVDTLVMRVTDILMVIPDLPLMLVLVATIRQMDLKVSPLSVLILVIglLYWTSAARLIRSQTLTIK 186
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILAL--LGWAGYARLIRRAALRSL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 187 ERQFVARARAIGAGHWHIIRKHILPQLMPLIVTNTVLILSTAILIESGLAFLGLGDP-----TQPSWGTMLNFAFSRSAI 261
Cdd:pfam00528 79 PSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGlglllIEAILGYDYPEIQGPVLA 158
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
12-295 |
1.72e-95 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 283.54 E-value: 1.72e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 12 LSEFWKAFRRNKLGLVGGFLILTALLAAIFAPALTPHSAVDImrdsnGRALTFASPATHSPLGTDDAGHDIWALLIYGAR 91
Cdd:COG1173 5 WRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQ-----DLAARLQPPSAAHWLGTDQLGRDVLSRLLYGAR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 92 ISLMVGFLAGFISMFVGSSLGIIAGYFGGAVDTLVMRVTDILMVIPDLPLMLVLVATIRQmdlkvsPLSVLILVIGLLYW 171
Cdd:COG1173 80 ISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGP------GLLNVILALGLTGW 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 172 TSAARLIRSQTLTIKERQFVARARAIGAGHWHIIRKHILPQLMPLIVTNTVLILSTAILIESGLAFLGLG-DPTQPSWGT 250
Cdd:COG1173 154 PGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGvQPPTPSWGT 233
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1176773522 251 MLNFAfsRSAISNgAWWFYLPPGIAILWVSLGCILLGNVLEEMMN 295
Cdd:COG1173 234 MLSEG--RNYLLT-APWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
12-298 |
1.29e-49 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 167.27 E-value: 1.29e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 12 LSEFWKAFRRNKLGLVGGFLILTALLAAIFAPALTPHSAVDIMRDSNGRALTFASPATHS-PLGTDDAGHDIWALLIYGA 90
Cdd:PRK10913 19 LQEFWHYFKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQFRDALLAPPVWQEGGSWAhILGTDDVGRDVLSRLMYGA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 91 RISLMVGFLAGFISMFVGSSLGIIAGYFGGAVDTLVMRVTDILMVIPDLPLMLVLVATIRQMDLKVSplsvliLVIGLLY 170
Cdd:PRK10913 99 RLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIVNAA------LALTFVA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 171 WTSAARLIRSQTLTIKERQFVARARAIGAGHWHIIRKHILPQ-LMPLIVTNTvLILSTAILIESGLAFLGLG-DPTQPSW 248
Cdd:PRK10913 173 LPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNcLAPLIVQAS-LGFSNAILDMAALGFLGMGaQPPTPEW 251
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1176773522 249 GTMLN--FAFSRSaisngAWWFYLPPGIAILWVSLGCILLGNVLEEMMNPRL 298
Cdd:PRK10913 252 GTMLSdvLQFAQS-----AWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKL 298
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
15-298 |
3.16e-48 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 163.45 E-value: 3.16e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 15 FWKaFRRNKLGLVGGFLILTALLAAIFAPALTPHsavdimrDSNGRALT--FASPATHSPLGTDDAGHDIWALLIYGARI 92
Cdd:PRK09881 24 VWM-LKGSPLTVTGAVIIVLMLLMMIFSPWLATH-------DPNAIDLTarLLPPSAAHWFGTDEVGRDLFSRVLVGSQQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 93 SLMVGFLAGFISMFVGSSLGIIAGYFGGAVDTLVMRVTDILMVIPDLPLMLVLVATIRqmdlkvSPLSVLILVIGLLYWT 172
Cdd:PRK09881 96 SILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALG------PSLFNAMLAIAIVRIP 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 173 SAARLIRSQTLTIKERQFVARARAIGAGHWHIIRKHILPQLMPLIVTNTVLILSTAILIESGLAFLGLGdPTQPS--WGT 250
Cdd:PRK09881 170 FYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLG-AQQPSaeWGA 248
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1176773522 251 MLnfAFSRSAISNgAWWFYLPPGIAILWVSLGCILLGNVLEEMMNPRL 298
Cdd:PRK09881 249 MV--ANGRNYVLD-QWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPKA 293
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
13-298 |
1.54e-46 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 159.12 E-value: 1.54e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 13 SEFWKAFRRNKLGLVGGFLILTALLAAIFAPALTPHSAVDIMrdsNGRALTFASPATHSpLGTDDAGHDIWALLIYGARI 92
Cdd:PRK15082 26 HEFWRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYDAENYF---DYDALNAGPSLQHW-FGVDSLGRDIFSRILVGARI 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 93 SLMVGFLAGFISMFVGSSLGIIAGYFGGAVDTLVMRVTDILMVIPDLPLMLVLVATIRqmdlkvSPLSVLILVIGLLYWT 172
Cdd:PRK15082 102 SLAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILG------SGMANVIIAVAIFSIP 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 173 SAARLIRSQTLTIKERQFVARARAIGAGHWHIIRKHILPQLMPLIVTNTVLILSTAILIESGLAFLGLG-DPTQPSWGTM 251
Cdd:PRK15082 176 AFARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGaQPPTPEWGAM 255
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1176773522 252 LNFAFSRSAISNGAWWFylpPGIAILWVSLGCILLGNVLEEMMNPRL 298
Cdd:PRK15082 256 LNEARADMVIAPHVALF---PSLAIFLTVLAFNLLGDGLRDALDPKI 299
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
20-302 |
5.84e-39 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 138.65 E-value: 5.84e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 20 RRNKLGLVGGFLILTALLAAIFAPALTPHS--AVDIMRdsngralTFASPATHSPLGTDDAGHDIWALLIYGARISLMVG 97
Cdd:PRK10417 1 SSRWSVRLALIIIALLALIALTSQWWLPYDpqAIDLPS-------RLLSPDAQHWLGTDHLGRDIFSRLMAGTRVSLGSV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 98 FLAGFISMFVGSSLGIIAGYFGGAVDTLVMRVTDILMVIPDLPLMLVLVATIRqmdlkvSPLSVLILVIGLLYWTSAARL 177
Cdd:PRK10417 74 MACLLLVLALGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILAFFMVGVLG------TGLTNVIIAIALSHWAWYARM 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 178 IRSQTLTIKERQFVARARAIGAGHWHIIRKHILPQLMPLIVTNTVLILSTAILIESGLAFLGLG-DPTQPSWGTMLNFA- 255
Cdd:PRK10417 148 VRSLVISLRQREFVLAARLSGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGvTAPTAEWGVMINDAr 227
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1176773522 256 -FSRSAISNGAWwfylpPGIAILWVSLGCILLGNVLEEMMNPRLTAHY 302
Cdd:PRK10417 228 qYIWTQPLLMFW-----PGLALFISVMAFNLLGDALRDHLDPHLVTEH 270
|
|
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
19-297 |
7.98e-35 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 128.42 E-value: 7.98e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 19 FRRNKLGLVGGFLILTALLAAIFAPALTPHSavdimRDSNGRALTFASPATHSP--LGTDDAGHDIWALLIYGARISLMV 96
Cdd:PRK15406 33 FMHNRAAVASLIVLVLIALFVILAPMLSQFA-----YDDTDWGMMSSAPDMESGhyFGTDSSGRDLLVRVAIGGRISLMV 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 97 GFLAGFISMFVGSSLGIIAGYFGGAVDTLVMRVTDILMVIPDLPLMLVLVATIRQMDLkvsplsVLILVIGLLYWTSAAR 176
Cdd:PRK15406 108 GVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNIL------LIFVAIGMVSWLDMAR 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 177 LIRSQTLTIKERQFVARARAIGAGHWHIIRKHILPQLMPLIVTNTVLILSTAILIESGLAFLGLGdpTQ---PSWGTMLN 253
Cdd:PRK15406 182 IVRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLG--TQeplSSWGALLS 259
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1176773522 254 FAFSRSAISngAWWFYLPPGiaILWVSLGCI-LLGNVLEEMMNPR 297
Cdd:PRK15406 260 DGANSMEVS--PWLLLFPAG--FLVVTLFCFnFIGDGLRDALDPK 300
|
|
| YejE |
COG4239 |
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ... |
65-253 |
3.06e-34 |
|
ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443381 [Multi-domain] Cd Length: 342 Bit Score: 127.57 E-value: 3.06e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 65 ASPATHSPLGTDDAGHDIWALLIYGARISLMVGFLAGFISMFVGSSLGIIAGYFGGAVDTLVMRVTDILMVIPDLPLMLV 144
Cdd:COG4239 115 SPPSAENWLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLLFQRFIEIWSSMPELYLLII 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 145 LVATIrqmdlkVSPLSVLILVIGLLYWTSAARLIRSQTLTIKERQFVARARAIGAGHWHIIRKHILPQLMPLIVTNTVLI 224
Cdd:COG4239 195 LSSIF------QPSFWLLLGILLLFGWMGLVGVVRAEFLRARNLEYVRAARALGVSDRRIMFRHILPNAMVATLTFLPFI 268
|
170 180 190
....*....|....*....|....*....|
gi 1176773522 225 LSTAILIESGLAFLGLG-DPTQPSWGTMLN 253
Cdd:COG4239 269 LSGAITTLTSLDFLGFGlPPGSPSLGELLA 298
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
65-252 |
7.98e-21 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 91.20 E-value: 7.98e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 65 ASPATHSPLGTDDAGHDIWALLIYGARISLMVGFLAGFISMFVGSSLGIIAGYFGGAVDTLVMRVTDILMVIPDLPLMLV 144
Cdd:PRK15021 115 SPPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIIL 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 145 LVATirqmdlkVSPLSVLILVIGLLY-WTSAARLIRSQTLTIKERQFVARARAIGAGHWHIIRKHILPQLMPLIVTNTVL 223
Cdd:PRK15021 195 LSSV-------VQPNFWWLLAITVLFgWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPF 267
|
170 180 190
....*....|....*....|....*....|
gi 1176773522 224 ILSTAILIESGLAFLGLGDPT-QPSWGTML 252
Cdd:PRK15021 268 ILCSSITTLTSLDFLGFGLPLgSPSLGELL 297
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
90-261 |
1.91e-19 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 84.25 E-value: 1.91e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 90 ARISLMVGFLAGFISMFVGSSLGIIAGYFGGAVDTLVMRVTDILMVIPDLPLMLVLVATIRQM--DLKVSPLSVLILVIG 167
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLlgWGILPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 168 LLYWTSAARLIRSQTLTIKERQFVARARAIGAGHWHIIRKHILPQLMPLIVTNTVLILSTAILIESGLAFLGLGDPTQPS 247
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160
|
170
....*....|....
gi 1176773522 248 WGTMLNFAFSRSAI 261
Cdd:cd06261 161 TGLLLIFAILFPGD 174
|
|
| PRK15111 |
PRK15111 |
peptide ABC transporter permease SapC; |
16-295 |
2.20e-17 |
|
peptide ABC transporter permease SapC;
Pssm-ID: 185066 [Multi-domain] Cd Length: 296 Bit Score: 80.90 E-value: 2.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 16 WKAFRRNKLGLVGGFLILTALLAAIFAPALTPHSavdIMRDSNGRALTFASPATHSP----LGTDDAGHDIWALLIYGAR 91
Cdd:PRK15111 20 WRKFYSDALAMVGLYGCAGLALLCLFGGWLAPYG---IDQQFLGYQLLPPSWSRYGEvsffLGTDDLGRDVLSRLLSGAA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 92 ISLMVGFLAGFISMFVGSSLGIIAGYFGGAVDTLVMRVTDILMVIPDLPLMLVLVATIRqmdlkvSPLSVLILVIGLLYW 171
Cdd:PRK15111 97 PTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAG------PSLSHAMFAVWLALL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 172 TSAARLIRSQTLTIKERQFVARARAIGAGHWHIIRKHILPQLMPLIVTNTVLILSTAILIESGLAFLGLGD--PTqPSWG 249
Cdd:PRK15111 171 PRMVRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLGAqlPS-PEWG 249
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1176773522 250 TMLNFAFSrsaISNGAWWFYLPPGIAILWVSLGCILLGNVLEEMMN 295
Cdd:PRK15111 250 AMLGDSLE---LIYVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAII 292
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
108-261 |
1.44e-15 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 73.49 E-value: 1.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 108 GSSLGIIAG-YFGGAVDTLVMRVTDILMVIPDLPLMLVLVATIRQMDLKVSPLSVLILVIglLYWTSAARLIRSQTLTIK 186
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILAL--LGWAGYARLIRRAALRSL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 187 ERQFVARARAIGAGHWHIIRKHILPQLMPLIVTNTVLILSTAILIESGLAFLGLGDP-----TQPSWGTMLNFAFSRSAI 261
Cdd:pfam00528 79 PSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGlglllIEAILGYDYPEIQGPVLA 158
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
79-241 |
4.11e-10 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 59.70 E-value: 4.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 79 GHDIWALLIYGARISLMVGFLAGFISMFVGSSLGIIAGYF-GGAVDTLVMRVTDILMVIPD--LPLMLVLVATIR----- 150
Cdd:COG0601 84 GRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRrGSWLDRLITVLALLGISIPSfwLGLLLILLFAVKlgwlp 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 151 ---QMDLKVSPLSVL------ILVIGLLYWTSAARLIRSQTLTIKERQFVARARAIGAGHWHIIRKHILPQLMPLIVTNT 221
Cdd:COG0601 164 vsgRVSPWEDFLDALrhlilpALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVTVL 243
|
170 180
....*....|....*....|....
gi 1176773522 222 VLILST----AILIESGLAFLGLG 241
Cdd:COG0601 244 GLQLGGllggAVVVETVFSWPGLG 267
|
|
| OppC_N |
pfam12911 |
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ... |
12-49 |
1.83e-06 |
|
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Pssm-ID: 463747 [Multi-domain] Cd Length: 53 Bit Score: 44.33 E-value: 1.83e-06
10 20 30
....*....|....*....|....*....|....*...
gi 1176773522 12 LSEFWKAFRRNKLGLVGGFLILTALLAAIFAPALTPHS 49
Cdd:pfam12911 3 WQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYD 40
|
|
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
81-225 |
7.39e-05 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 43.14 E-value: 7.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 81 DIWALLIYGARISLMVGFLAGFISMFVGSSLGIIAGYFGGAVDTLVMRVTDILMVIPDLPLMLVLVATIRQMDLKVSPLS 160
Cdd:COG0765 10 DYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPLLGIDLSPFV 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1176773522 161 VLILVIGLlyWTSA--ARLIRSQTLTIKERQFVArARAIGAGHWHIIRKHILPQLMPLIV---TNTVLIL 225
Cdd:COG0765 90 AAVIALTL--NSAAylAEIVRAGIQSVPKGQWEA-ARALGLSRWQTMRRIILPQALRIILpplGNEFISL 156
|
|
|