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Conserved domains on  [gi|1176771979|gb|OQY89855|]
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MAG: hypothetical protein B6D38_05525 [Anaerolineae bacterium UTCFX1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IcmF super family cl34628
Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and ...
 491-553 5.52e-03

Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport];


The actual alignment was detected with superfamily member COG3523:

Pssm-ID: 442745 [Multi-domain]  Cd Length: 1192  Bit Score: 39.55  E-value: 5.52e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1176771979  491 RSVWFVRTIaceGVFILIFTQWYASRYFHIGGQMPF------VVMIAAIVGLWGAIVGGGWWLDRRRNQ 553
Cdd:COG3523      7 TSRWVLSLL---GLLALALLIWFGGPLLAIGDYRPLesvlvrLLAIAVILLLWLLVWLVRRWRARRANR 72
 
Name Accession Description Interval E-value
IcmF COG3523
Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and ...
 491-553 5.52e-03

Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442745 [Multi-domain]  Cd Length: 1192  Bit Score: 39.55  E-value: 5.52e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1176771979  491 RSVWFVRTIaceGVFILIFTQWYASRYFHIGGQMPF------VVMIAAIVGLWGAIVGGGWWLDRRRNQ 553
Cdd:COG3523      7 TSRWVLSLL---GLLALALLIWFGGPLLAIGDYRPLesvlvrLLAIAVILLLWLLVWLVRRWRARRANR 72
 
Name Accession Description Interval E-value
IcmF COG3523
Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and ...
 491-553 5.52e-03

Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442745 [Multi-domain]  Cd Length: 1192  Bit Score: 39.55  E-value: 5.52e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1176771979  491 RSVWFVRTIaceGVFILIFTQWYASRYFHIGGQMPF------VVMIAAIVGLWGAIVGGGWWLDRRRNQ 553
Cdd:COG3523      7 TSRWVLSLL---GLLALALLIWFGGPLLAIGDYRPLesvlvrLLAIAVILLLWLLVWLVRRWRARRANR 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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