NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|117501768|gb|ABK35023|]
View 

cytochrome b, partial (mitochondrion) [Lophuromys woosnami]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-126 6.70e-98

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 285.38  E-value: 6.70e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   1 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHAN 80
Cdd:MTH00100   6 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHAN 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 117501768  81 GASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00100  86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGY 131
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-126 6.70e-98

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 285.38  E-value: 6.70e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   1 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHAN 80
Cdd:MTH00100   6 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHAN 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 117501768  81 GASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00100  86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGY 131
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 4-126 1.35e-52

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 164.08  E-value: 1.35e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   4 PLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHANGAS 83
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 117501768  84 MFFICLFLHVGRGIYYGSY--TFMETWNIGIILLFAVMATAFMGY 126
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGY 125
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
13-126 1.41e-46

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 148.68  E-value: 1.41e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   13 FIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 92
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 117501768   93 VGRGIYYG--SYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGY 116
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-126 1.18e-42

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 144.16  E-value: 1.18e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   4 PLMKIINHsFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHANGAS 83
Cdd:COG1290   19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 117501768  84 MFFICLFLHVGRGIYYGSYTF-ME-TWNIGIILLFAVMATAFMGY 126
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYKKpRElNWIIGVLLLLLTMAEAFTGY 142
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-126 6.70e-98

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 285.38  E-value: 6.70e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   1 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHAN 80
Cdd:MTH00100   6 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHAN 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 117501768  81 GASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00100  86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGY 131
CYTB MTH00074
cytochrome b; Provisional
 1-126 2.43e-85

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 253.45  E-value: 2.43e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   1 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHAN 80
Cdd:MTH00074   7 KTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHAN 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 117501768  81 GASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00074  87 GASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGY 132
CYTB MTH00131
cytochrome b; Provisional
 1-126 1.36e-83

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 249.18  E-value: 1.36e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   1 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHAN 80
Cdd:MTH00131   6 KTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHAN 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 117501768  81 GASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00131  86 GASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGY 131
CYTB MTH00119
cytochrome b; Provisional
 1-126 7.39e-83

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 247.12  E-value: 7.39e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   1 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHAN 80
Cdd:MTH00119   7 KSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHAN 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 117501768  81 GASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00119  87 GASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGY 132
CYTB MTH00191
cytochrome b; Provisional
 1-126 9.23e-81

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 241.36  E-value: 9.23e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   1 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHAN 80
Cdd:MTH00191   3 KTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHAN 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 117501768  81 GASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00191  83 GASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGY 128
CYTB MTH00156
cytochrome b; Provisional
 6-126 6.60e-78

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 233.52  E-value: 6.60e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   6 MKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHANGASMF 85
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 117501768  86 FICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGY 121
CYTB MTH00034
cytochrome b; Validated
 1-126 2.29e-73

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 223.04  E-value: 2.29e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   1 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHAN 80
Cdd:MTH00034   6 KSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHAN 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 117501768  81 GASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00034  86 GASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGY 131
CYTB MTH00145
cytochrome b; Provisional
 1-126 2.44e-73

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 222.86  E-value: 2.44e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   1 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHAN 80
Cdd:MTH00145   7 KSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHAN 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 117501768  81 GASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00145  87 GASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGY 132
CYTB MTH00016
cytochrome b; Validated
 1-126 8.05e-72

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 218.78  E-value: 8.05e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   1 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHAN 80
Cdd:MTH00016   7 KTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHAN 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 117501768  81 GASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00016  87 GASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGY 132
CYTB MTH00224
cytochrome b; Provisional
 2-126 4.80e-62

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 193.98  E-value: 4.80e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   2 THPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHANG 81
Cdd:MTH00224   8 THPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANG 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 117501768  82 ASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00224  88 ASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGY 132
CYTB MTH00022
cytochrome b; Validated
 1-126 2.94e-60

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 189.14  E-value: 2.94e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   1 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHAN 80
Cdd:MTH00022   5 KENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHAN 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 117501768  81 GASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00022  85 GASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGY 130
CYTB MTH00053
cytochrome b; Provisional
 1-126 1.69e-57

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 182.21  E-value: 1.69e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   1 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHAN 80
Cdd:MTH00053   7 KENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHAN 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 117501768  81 GASMFFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00053  87 GASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGY 132
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 4-126 1.35e-52

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 164.08  E-value: 1.35e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   4 PLMKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHANGAS 83
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 117501768  84 MFFICLFLHVGRGIYYGSY--TFMETWNIGIILLFAVMATAFMGY 126
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGY 125
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
13-126 1.41e-46

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 148.68  E-value: 1.41e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   13 FIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 92
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 117501768   93 VGRGIYYG--SYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGY 116
CYTB MTH00033
cytochrome b; Provisional
 14-126 2.60e-45

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 150.86  E-value: 2.60e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768  14 IDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 93
Cdd:MTH00033  16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                         90       100       110
                 ....*....|....*....|....*....|...
gi 117501768  94 GRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00033  96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGY 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
4-126 1.18e-42

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 144.16  E-value: 1.18e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   4 PLMKIINHsFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHANGAS 83
Cdd:COG1290   19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 117501768  84 MFFICLFLHVGRGIYYGSYTF-ME-TWNIGIILLFAVMATAFMGY 126
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYKKpRElNWIIGVLLLLLTMAEAFTGY 142
CYTB MTH00086
cytochrome b; Provisional
 7-126 8.40e-36

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 125.44  E-value: 8.40e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   7 KIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHANGASMFF 86
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 117501768  87 ICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGY 120
CYTB MTH00046
cytochrome b; Validated
 5-126 1.26e-24

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 95.82  E-value: 1.26e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768   5 LMKIINHSFIDLPAPSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHANGASM 84
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 117501768  85 FFICLFLHVGRGIYYGSYTFMETWNIGIILLFAVMATAFMGY 126
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGY 122
PRK03735 PRK03735
cytochrome b6; Provisional
 28-126 4.45e-21

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 83.99  E-value: 4.45e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768  28 FGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGIYYGSYTFME- 106
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100
                 ....*....|....*....|.
gi 117501768 107 -TWNIGIILLFAVMATAFMGY 126
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGY 144
petB CHL00070
cytochrome b6
 19-123 8.06e-15

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 67.44  E-value: 8.06e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117501768  19 PSNISSWWNFGSLLGVCLIIQIATGLFLAMHYTSDTATAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGIY 98
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100
                 ....*....|....*....|....*..
gi 117501768  99 YGSYTFME--TWNIGIILlfAVMATAF 123
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVL--AVLTVSF 131
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
83-126 1.85e-06

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 44.54  E-value: 1.85e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 117501768   83 SMFFICLFLHVGRGIYYGSYTFME--TWNIGIILLFAVMATAFMGY 126
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGY 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH