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Conserved domains on  [gi|117450|sp|P02530|]
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RecName: Full=Gamma-crystallin 1; AltName: Full=Gamma-crystallin I

Protein Classification

beta/gamma crystallin family protein( domain architecture ID 10644142)

beta/gamma crystallin family protein such as beta- and gamma-crystallins, which are structural components of the vertebrate eye lens

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
 48-129 1.43e-39

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


:

Pssm-ID: 459639  Cd Length: 82  Bit Score: 127.61  E-value: 1.43e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117450      48 RLRIYEREEFRGQMMEFTEDCPQVHEEFNYHDIHSCNVLEGHWILYEQPNYRGRQYYLRPGEYRRYTEWGAVTPRVGAFR 127
Cdd:pfam00030   1 KIVLYEKENFQGRSIELTDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSLR 80


                  ..
gi 117450     128 RV 129
Cdd:pfam00030  81 PI 82
XTALbg smart00247
Beta/gamma crystallins; Beta/gamma crystallins
 1-40 6.68e-19

Beta/gamma crystallins; Beta/gamma crystallins


:

Pssm-ID: 214583  Cd Length: 82  Bit Score: 74.85  E-value: 6.68e-19
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 117450        1 WMLYEHPNYTGHQYFLRRGEYPDFQQWMGLNDSIRSCRVI 40
Cdd:smart00247  43 WVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQISSIRRI 82
 
Name Accession Description Interval E-value
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
 48-129 1.43e-39

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


Pssm-ID: 459639  Cd Length: 82  Bit Score: 127.61  E-value: 1.43e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117450      48 RLRIYEREEFRGQMMEFTEDCPQVHEEFNYHDIHSCNVLEGHWILYEQPNYRGRQYYLRPGEYRRYTEWGAVTPRVGAFR 127
Cdd:pfam00030   1 KIVLYEKENFQGRSIELTDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSLR 80


                  ..
gi 117450     128 RV 129
Cdd:pfam00030  81 PI 82
XTALbg smart00247
Beta/gamma crystallins; Beta/gamma crystallins
 48-129 2.25e-37

Beta/gamma crystallins; Beta/gamma crystallins


Pssm-ID: 214583  Cd Length: 82  Bit Score: 121.85  E-value: 2.25e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117450       48 RLRIYEREEFRGQMMEFTEDCPQVHEEFNYHDIHSCNVLEGHWILYEQPNYRGRQYYLRPGEYRRYTEWGAVTPRVGAFR 127
Cdd:smart00247   1 KITLYEDENFQGRSYELSDDCPSLQDYGSRDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQISSIR 80


                   ..
gi 117450      128 RV 129
Cdd:smart00247  81 RI 82
XTALbg smart00247
Beta/gamma crystallins; Beta/gamma crystallins
 1-40 6.68e-19

Beta/gamma crystallins; Beta/gamma crystallins


Pssm-ID: 214583  Cd Length: 82  Bit Score: 74.85  E-value: 6.68e-19
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 117450        1 WMLYEHPNYTGHQYFLRRGEYPDFQQWMGLNDSIRSCRVI 40
Cdd:smart00247  43 WVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQISSIRRI 82
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
 1-40 9.22e-18

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


Pssm-ID: 459639  Cd Length: 82  Bit Score: 72.14  E-value: 9.22e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 117450       1 WMLYEHPNYTGHQYFLRRGEYPDFQQWMGLNDSIRSCRVI 40
Cdd:pfam00030  43 WVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSLRPI 82
 
Name Accession Description Interval E-value
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
 48-129 1.43e-39

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


Pssm-ID: 459639  Cd Length: 82  Bit Score: 127.61  E-value: 1.43e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117450      48 RLRIYEREEFRGQMMEFTEDCPQVHEEFNYHDIHSCNVLEGHWILYEQPNYRGRQYYLRPGEYRRYTEWGAVTPRVGAFR 127
Cdd:pfam00030   1 KIVLYEKENFQGRSIELTDDCPSLQERGFNSRVNSIRVLSGAWVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSLR 80


                  ..
gi 117450     128 RV 129
Cdd:pfam00030  81 PI 82
XTALbg smart00247
Beta/gamma crystallins; Beta/gamma crystallins
 48-129 2.25e-37

Beta/gamma crystallins; Beta/gamma crystallins


Pssm-ID: 214583  Cd Length: 82  Bit Score: 121.85  E-value: 2.25e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117450       48 RLRIYEREEFRGQMMEFTEDCPQVHEEFNYHDIHSCNVLEGHWILYEQPNYRGRQYYLRPGEYRRYTEWGAVTPRVGAFR 127
Cdd:smart00247   1 KITLYEDENFQGRSYELSDDCPSLQDYGSRDNVSSVRVESGCWVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQISSIR 80


                   ..
gi 117450      128 RV 129
Cdd:smart00247  81 RI 82
XTALbg smart00247
Beta/gamma crystallins; Beta/gamma crystallins
 1-40 6.68e-19

Beta/gamma crystallins; Beta/gamma crystallins


Pssm-ID: 214583  Cd Length: 82  Bit Score: 74.85  E-value: 6.68e-19
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 117450        1 WMLYEHPNYTGHQYFLRRGEYPDFQQWMGLNDSIRSCRVI 40
Cdd:smart00247  43 WVLYEQPNYRGRQYVLEPGEYPDYQEWGGFNDQISSIRRI 82
Crystall pfam00030
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ...
 1-40 9.22e-18

Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low.


Pssm-ID: 459639  Cd Length: 82  Bit Score: 72.14  E-value: 9.22e-18
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 117450       1 WMLYEHPNYTGHQYFLRRGEYPDFQQWMGLNDSIRSCRVI 40
Cdd:pfam00030  43 WVLYEHPNFRGRQYVLEPGEYPDWSDWGAPNDRIGSLRPI 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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