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Conserved domains on  [gi|117320535|ref|NP_079539|]
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proline-rich protein 3 isoform a [Homo sapiens]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 10457906)

zinc finger CCCH domain-containing protein similar to Homo sapiens proline-rich protein 3 (PRR3)

CATH:  4.10.1000.10
Gene Ontology:  GO:0046872|GO:0003676
PubMed:  12665246|27990022
SCOP:  3001741

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
157-181 6.62e-04

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 35.63  E-value: 6.62e-04
                          10        20
                  ....*....|....*....|....*
gi 117320535  157 DRPVCRHFAKKGHCRYEDLCAFYHP 181
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHG 26
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
157-181 6.62e-04

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 35.63  E-value: 6.62e-04
                          10        20
                  ....*....|....*....|....*
gi 117320535  157 DRPVCRHFAKKGHCRYEDLCAFYHP 181
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHG 26
ZnF_C3H1 smart00356
zinc finger;
159-181 9.69e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 32.60  E-value: 9.69e-03
                           10        20
                   ....*....|....*....|...
gi 117320535   159 PVCRHFaKKGHCRYEDLCAFYHP 181
Cdd:smart00356   5 ELCKFF-KRGYCPRGDRCKFAHP 26
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
157-181 6.62e-04

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 35.63  E-value: 6.62e-04
                          10        20
                  ....*....|....*....|....*
gi 117320535  157 DRPVCRHFAKKGHCRYEDLCAFYHP 181
Cdd:pfam00642   2 KTELCRFFLRTGYCKYGDRCKFAHG 26
ZnF_C3H1 smart00356
zinc finger;
159-181 9.69e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 32.60  E-value: 9.69e-03
                           10        20
                   ....*....|....*....|...
gi 117320535   159 PVCRHFaKKGHCRYEDLCAFYHP 181
Cdd:smart00356   5 ELCKFF-KRGYCPRGDRCKFAHP 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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