NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|11693176|ref|NP_071797|]
View 

large ribosomal subunit protein uL10 [Rattus norvegicus]

Protein Classification

uL10 family ribosomal protein( domain architecture ID 11488073)

uL10 family ribosomal protein is an essential element of the ribosomal GTPase-associated center responsible for the interplay with translational factors during various stages of protein synthesis

Gene Ontology:  GO:0003735|GO:0000027
PubMed:  24524803

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PTZ00135 PTZ00135
60S acidic ribosomal protein P0; Provisional
 1-317 1.32e-135

60S acidic ribosomal protein P0; Provisional


:

Pssm-ID: 240285 [Multi-domain]  Cd Length: 310  Bit Score: 386.68  E-value: 1.32e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176    1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLP 80
Cdd:PTZ00135   1 MAKPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176   81 HIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQL 160
Cdd:PTZ00135  81 HVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPIDVVIPAGPTGMDPSQTSFFQALGIATKIVKGQIEITNEVHL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176  161 IKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVASVPHS 240
Cdd:PTZ00135 161 IKEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDNGSIYDAKVLDITDEDIVAKFQEGVQNVAAISLAAGYPTEASAPHS 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 11693176  241 IINGYKRVLALSVETDYTFPLAEKVKAFLadpsafaAAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD 317
Cdd:PTZ00135 241 ILNAFKNLAAIGLESGFTFPLAEKIKEAL-------ANPSAAAAAAAAAAAAAAAAAAAPAEEEEEEEDDMGFGLFD 310
 
Name Accession Description Interval E-value
PTZ00135 PTZ00135
60S acidic ribosomal protein P0; Provisional
 1-317 1.32e-135

60S acidic ribosomal protein P0; Provisional


Pssm-ID: 240285 [Multi-domain]  Cd Length: 310  Bit Score: 386.68  E-value: 1.32e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176    1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLP 80
Cdd:PTZ00135   1 MAKPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176   81 HIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQL 160
Cdd:PTZ00135  81 HVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPIDVVIPAGPTGMDPSQTSFFQALGIATKIVKGQIEITNEVHL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176  161 IKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVASVPHS 240
Cdd:PTZ00135 161 IKEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDNGSIYDAKVLDITDEDIVAKFQEGVQNVAAISLAAGYPTEASAPHS 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 11693176  241 IINGYKRVLALSVETDYTFPLAEKVKAFLadpsafaAAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD 317
Cdd:PTZ00135 241 ILNAFKNLAAIGLESGFTFPLAEKIKEAL-------ANPSAAAAAAAAAAAAAAAAAAAPAEEEEEEEDDMGFGLFD 310
Ribosomal_P0_L10e cd05795
Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal ...
 9-182 1.07e-98

Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.


Pssm-ID: 240221 [Multi-domain]  Cd Length: 175  Bit Score: 287.93  E-value: 1.07e-98
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176   9 WKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGF 88
Cdd:cd05795   2 WKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVGF 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176  89 VFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVG 168
Cdd:cd05795  82 IFTNGDPFEIRKILEENKVPAPAKPGAIAPCDVVVPAGPTGMPPGPTSFFQALGIPTKIEKGKIEIISDVVVVKKGEKVG 161

                       170
                ....*....|....
gi 11693176 169 ASEATLLNMLNISP 182
Cdd:cd05795 162 ASEATLLNKLNIKP 175
RL10P_insert pfam17777
Insertion domain in 60S ribosomal protein L10P; This domain is found in prokaryotic and ...
 118-180 1.50e-19

Insertion domain in 60S ribosomal protein L10P; This domain is found in prokaryotic and archaeal ribosomal L10 protein.


Pssm-ID: 465500 [Multi-domain]  Cd Length: 71  Bit Score: 81.10  E-value: 1.50e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 11693176   118 PCEVTVPAQNTGLGPEKT-SFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Cdd:pfam17777   8 TEDVVLPAGPTGLAPGPIePQLRALGIPTKIKKGKIEITKDYTVCKEGEKLTPEQANLLKLLGI 71
RplJ COG0244
Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L10 ...
 38-94 2.65e-04

Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L10 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440014  Cd Length: 172  Bit Score: 40.82  E-value: 2.65e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 11693176  38 KQMQQIRMSLRGK-AVVLMGKNTMMRKAIRGHlennpALEKLLPHIRGNVGFVFTKED 94
Cdd:COG0244  34 AQMTELRRKLREAgVEYKVVKNTLARIALEGT-----GFEGLDDLLKGPTAIAFSYED 86
 
Name Accession Description Interval E-value
PTZ00135 PTZ00135
60S acidic ribosomal protein P0; Provisional
 1-317 1.32e-135

60S acidic ribosomal protein P0; Provisional


Pssm-ID: 240285 [Multi-domain]  Cd Length: 310  Bit Score: 386.68  E-value: 1.32e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176    1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLP 80
Cdd:PTZ00135   1 MAKPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176   81 HIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQL 160
Cdd:PTZ00135  81 HVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPIDVVIPAGPTGMDPSQTSFFQALGIATKIVKGQIEITNEVHL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176  161 IKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVASVPHS 240
Cdd:PTZ00135 161 IKEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDNGSIYDAKVLDITDEDIVAKFQEGVQNVAAISLAAGYPTEASAPHS 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 11693176  241 IINGYKRVLALSVETDYTFPLAEKVKAFLadpsafaAAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD 317
Cdd:PTZ00135 241 ILNAFKNLAAIGLESGFTFPLAEKIKEAL-------ANPSAAAAAAAAAAAAAAAAAAAPAEEEEEEEDDMGFGLFD 310
Ribosomal_P0_L10e cd05795
Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal ...
 9-182 1.07e-98

Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.


Pssm-ID: 240221 [Multi-domain]  Cd Length: 175  Bit Score: 287.93  E-value: 1.07e-98
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176   9 WKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGF 88
Cdd:cd05795   2 WKKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVGF 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176  89 VFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVG 168
Cdd:cd05795  82 IFTNGDPFEIRKILEENKVPAPAKPGAIAPCDVVVPAGPTGMPPGPTSFFQALGIPTKIEKGKIEIISDVVVVKKGEKVG 161

                       170
                ....*....|....
gi 11693176 169 ASEATLLNMLNISP 182
Cdd:cd05795 162 ASEATLLNKLNIKP 175
PTZ00240 PTZ00240
60S ribosomal protein P0; Provisional
 1-259 2.51e-67

60S ribosomal protein P0; Provisional


Pssm-ID: 140267 [Multi-domain]  Cd Length: 323  Bit Score: 213.67  E-value: 2.51e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176    1 MPREDRAtwKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPA--LEKL 78
Cdd:PTZ00240   1 MPSITTA--KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKAsaEAKL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176   79 LPH-------IRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGT 151
Cdd:PTZ00240  79 FNDqceeknlLSGNTGLIFTNNEVQEITSVLDSHRVKAPARVGAIAPCDVIVPAGSTGMEPTQTSFFQALNIATKIAKGM 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176  152 IEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGY 231
Cdd:PTZ00240 159 VEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVEVLSVWDRGVLFTREDLSMTEDVVEKMLMEGLSNVAAMSLGAGI 238

                        250       260
                 ....*....|....*....|....*...
gi 11693176  232 PTVASVPHSIINGYKRVLALSVETDYTF 259
Cdd:PTZ00240 239 PTAATIGPMLVDAFKNLLAVSVATSYEF 266
rplP0 PRK04019
acidic ribosomal protein P0; Validated
 9-257 7.37e-49

acidic ribosomal protein P0; Validated


Pssm-ID: 179712 [Multi-domain]  Cd Length: 330  Bit Score: 165.81  E-value: 7.37e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176    9 WKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAirghLEN--NPALEKLLPHIRGNV 86
Cdd:PRK04019   7 WKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRA----LEEagEEDLEKLEDYLEGQV 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176   87 GFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGL--GPeKTSFFQALGITTKISRGTIEILSDVQLIKTG 164
Cdd:PRK04019  83 ALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAPEDIVVPAGPTGFppGP-ILSELQKLGIPARIQKGKIVIKKDTVVAKAG 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176  165 DKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVASVPHSIING 244
Cdd:PRK04019 162 EVISPELANVLQKLGIKPIEVGLDLKAAYEDGVIYTPEVLAIDEEKYRSDIQEAAQNAFNLAVNAAYPTPETLETLIQKA 241

                        250
                 ....*....|...
gi 11693176  245 YKRVLALSVETDY 257
Cdd:PRK04019 242 FREAKALAVEAGI 254
Ribosomal_L10_P0 cd00379
Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in ...
 9-181 1.82e-27

Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.


Pssm-ID: 238222 [Multi-domain]  Cd Length: 155  Bit Score: 104.57  E-value: 1.82e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176   9 WKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVL-MGKNTMMRKAIRGHLEnnpalEKLLPHIRGNVG 87
Cdd:cd00379   2 KKEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLkVGKNTLMRRALKGTGF-----EELKPLLKGPTA 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176  88 FVFTKEDLTEIRDMLLANKVPAAARAGA--IAPCEVTVPAQNTGLGPEKTsffQALGITTKISRGTIEIlsdvqliktgd 165
Cdd:cd00379  77 LAFTNEDPVEVAKVLKDFAKENKKLFAKggVVAGKVLDPAGVTALAKLPS---REELLAMLIGLLKAPI----------- 142

                       170
                ....*....|....*.
gi 11693176 166 kvgASEATLLNMLNIS 181
Cdd:cd00379 143 ---AKLARLLNALGIG 155
RL10P_insert pfam17777
Insertion domain in 60S ribosomal protein L10P; This domain is found in prokaryotic and ...
 118-180 1.50e-19

Insertion domain in 60S ribosomal protein L10P; This domain is found in prokaryotic and archaeal ribosomal L10 protein.


Pssm-ID: 465500 [Multi-domain]  Cd Length: 71  Bit Score: 81.10  E-value: 1.50e-19
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 11693176   118 PCEVTVPAQNTGLGPEKT-SFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Cdd:pfam17777   8 TEDVVLPAGPTGLAPGPIePQLRALGIPTKIKKGKIEITKDYTVCKEGEKLTPEQANLLKLLGI 71
Ribosomal_L10 pfam00466
Ribosomal protein L10;
1-102 7.00e-19

Ribosomal protein L10;


Pssm-ID: 459822 [Multi-domain]  Cd Length: 99  Bit Score: 79.89  E-value: 7.00e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176     1 MPREdratWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVL-MGKNTMMRKAIRGHlennpALEKLL 79
Cdd:pfam00466   1 KTRE----KKEELVEELKELLKEYKSVVVVDYRGLTVAQLTELRKKLRENGAELkVGKNTLMRRALEET-----GEEKLE 71

                          90       100
                  ....*....|....*....|...
gi 11693176    80 PHIRGNVGFVFTKEDLTEIRDML 102
Cdd:pfam00466  72 DYLKGPTALLFTNEDPVAVAKVL 94
Ribosomal_P0_like cd05796
Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized ...
 9-167 1.68e-15

Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.


Pssm-ID: 240222 [Multi-domain]  Cd Length: 163  Bit Score: 72.61  E-value: 1.68e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176   9 WKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGkAVVLMGKNTMMRKAIrGHLENN---PALEKLLPHIRGN 85
Cdd:cd05796   2 LKQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKD-SRFFFGKNKVMQVAL-GRTPEDeykPNLHKLSKYLKGQ 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176  86 VGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAqntglGP--------EKTsfFQALGITTKISRGTIEILSD 157
Cdd:cd05796  80 VGLLFTNEPPEEVIEYFDSYSEPDFARAGSIATETVTLPE-----GPleqfphsmEPQ--LRKLGLPTKLKKGVITLEAD 152

                       170
                ....*....|
gi 11693176 158 VQLIKTGDKV 167
Cdd:cd05796 153 YVVCEEGKVL 162
Ribosomal_L10 cd05797
Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and ...
 16-94 3.81e-05

Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These bacteria and eukaryotic sequences have no additional C-terminal domain, present in other eukaryotic and archaeal orthologs.


Pssm-ID: 240223  Cd Length: 157  Bit Score: 43.26  E-value: 3.81e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11693176  16 KIIQLLDDYPkcFIVGADNVG--SKQMQQIRMSLRGKAVVLM-GKNTMMRKAIRGHlennpALEKLLPHIRGNVGFVFTK 92
Cdd:cd05797  11 ELKEKLKEAK--SVVVADYRGltVAQLTELRKELREAGVKLKvVKNTLAKRALEGT-----GFEDLDDLLKGPTAIAFSE 83


                ..
gi 11693176  93 ED 94
Cdd:cd05797  84 ED 85
RplJ COG0244
Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L10 ...
 38-94 2.65e-04

Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L10 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440014  Cd Length: 172  Bit Score: 40.82  E-value: 2.65e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 11693176  38 KQMQQIRMSLRGK-AVVLMGKNTMMRKAIRGHlennpALEKLLPHIRGNVGFVFTKED 94
Cdd:COG0244  34 AQMTELRRKLREAgVEYKVVKNTLARIALEGT-----GFEGLDDLLKGPTAIAFSYED 86
rplJ PRK00099
50S ribosomal protein L10; Reviewed
 38-94 5.14e-03

50S ribosomal protein L10; Reviewed


Pssm-ID: 234632  Cd Length: 172  Bit Score: 37.04  E-value: 5.14e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 11693176   38 KQMQQIRMSLRGKAVVLM-GKNTMMRKAirghLENNPaLEKLLPHIRGNVGFVFTKED 94
Cdd:PRK00099  34 AQMTELRKKLREAGVEYKvVKNTLARRA----LEGTG-FEGLDDLLKGPTAIAFSYED 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH