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Conserved domains on  [gi|116734738|ref|YP_842412|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Pandion haliaetus]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-323 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 608.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738   3 WSPTLTNMVMTLSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTP 82
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  83 MLALLLALTIWIPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIL 162
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 163 LSGNYTLHTLSVTQEPLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 243 TLTTILFLNPSSLNMPPQLFTVILTTKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPTSYAGIP 322
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 .
gi 116734738 323 P 323
Cdd:MTH00111 321 P 321
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 608.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738   3 WSPTLTNMVMTLSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTP 82
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  83 MLALLLALTIWIPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIL 162
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 163 LSGNYTLHTLSVTQEPLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 243 TLTTILFLNPSSLNMPPQLFTVILTTKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPTSYAGIP 322
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 .
gi 116734738 323 P 323
Cdd:MTH00111 321 P 321
NADHdh pfam00146
NADH dehydrogenase;
14-310 3.59e-114

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 332.52  E-value: 3.59e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738   14 LSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPMLALLLALTIW 93
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738   94 --IPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSGNYTLHT 171
Cdd:pfam00146  83 avIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  172 LSVTQEPLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFL- 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLg 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734738  251 -NPSSLNMPPQLFTVIlttKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:pfam00146 243 gWLGPFPLPGLLWFLL---KVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-306 4.95e-103

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 305.13  E-value: 4.95e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738   1 MSW--SPTLTNMVMTLSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLF 78
Cdd:COG1005    1 MSLllAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  79 TMTPMLALLLALTIWIPLPL--PFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAII 156
Cdd:COG1005   81 LLAPILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 157 LLSVILLSGNYTLHTLSVTQE-PLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEY 235
Cdd:COG1005  161 LLGVVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEY 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734738 236 ANIMLMNTLTTILFL-------NPSSLNMPPQLFTVILttKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLA 306
Cdd:COG1005  241 ANMFLVSALATTLFLggwlgpfPILPLGGLPGILWFLL--KTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 608.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738   3 WSPTLTNMVMTLSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTP 82
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  83 MLALLLALTIWIPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIL 162
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 163 LSGNYTLHTLSVTQEPLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 243 TLTTILFLNPSSLNMPPQLFTVILTTKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPTSYAGIP 322
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 .
gi 116734738 323 P 323
Cdd:MTH00111 321 P 321
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 4-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 514.16  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738   4 SPTLTNMVMTLSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPM 83
Cdd:MTH00134   3 STLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPM 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  84 LALLLALTIWIPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILL 163
Cdd:MTH00134  83 LALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 164 SGNYTLHTLSVTQEPLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNT 243
Cdd:MTH00134 163 TGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNT 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 244 LTTILFLNPSSLNMPPQLFTVILTTKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPTSYAGIPP 323
Cdd:MTH00134 243 LSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPP 322
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 5-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 511.47  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738   5 PTLTNMVMTLSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPML 84
Cdd:MTH00071   3 TLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTM 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  85 ALLLALTIWIPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLS 164
Cdd:MTH00071  83 ALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLT 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 165 GNYTLHTLSVTQEPLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTL 244
Cdd:MTH00071 163 GGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTL 242

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734738 245 TTILFLNPSSLNMPPQLFTVILTTKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPTSYAGIPP 323
Cdd:MTH00071 243 STILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 10-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 508.01  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  10 MVMTLSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPMLALLLA 89
Cdd:MTH00104   3 MINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  90 LTIWIPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSGNYTL 169
Cdd:MTH00104  83 LTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 170 HTLSVTQEPLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILF 249
Cdd:MTH00104 163 STLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILF 242

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116734738 250 LNPSSLNMPPQLFTVILTTKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPTSYAGIPP 323
Cdd:MTH00104 243 LGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPP 316
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 6-323 7.21e-150

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 423.17  E-value: 7.21e-150
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738   6 TLTNMVMTLSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPMLA 85
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  86 LLLALTIWIPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSG 165
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 166 NYTLHTLSVTQEPLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00218 161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734738 246 TILFLNPSSLnmppqlfTVILTTKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPTSYAGIPP 323
Cdd:MTH00218 241 VILFLGTSLT-------TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 13-323 4.72e-140

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 398.97  E-value: 4.72e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  13 TLSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPMLALLLALTI 92
Cdd:MTH00040  10 LLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  93 WIPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSGNYTLHTL 172
Cdd:MTH00040  90 WSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSI 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 173 SVTQEPLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLNP 252
Cdd:MTH00040 170 SNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVILFLGG 249

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116734738 253 SS-LNMPPQLFTVILTTKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPTSYAGIPP 323
Cdd:MTH00040 250 GSpFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 10-320 1.11e-115

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 336.33  E-value: 1.11e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  10 MVMTLSYAI----PILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPMLA 85
Cdd:MTH00195   1 WMISVIHFLiqivPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  86 LLLALTIWIPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSG 165
Cdd:MTH00195  81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 166 NYTLHTLSVTQEPLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00195 161 SFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734738 246 TILFLNPSSlnmppqlfTVILTTKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPTSYAG 320
Cdd:MTH00195 241 TILFLGGGG--------TIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 20-307 2.64e-115

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 335.30  E-value: 2.64e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  20 ILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPMLALLLALTIWIPLPLP 99
Cdd:MTH00143  14 VLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 100 FSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSGNYTLHTLSVTQEPL 179
Cdd:MTH00143  94 FSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSV 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 180 CLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLnpSSLNMPP 259
Cdd:MTH00143 174 WLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFF--GGSSVLF 251

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 116734738 260 QLFTVILTTKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLAL 307
Cdd:MTH00143 252 LLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
NADHdh pfam00146
NADH dehydrogenase;
14-310 3.59e-114

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 332.52  E-value: 3.59e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738   14 LSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPMLALLLALTIW 93
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738   94 --IPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSGNYTLHT 171
Cdd:pfam00146  83 avIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  172 LSVTQEPLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFL- 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLg 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734738  251 -NPSSLNMPPQLFTVIlttKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:pfam00146 243 gWLGPFPLPGLLWFLL---KVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 10-314 1.97e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 330.58  E-value: 1.97e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  10 MVMTLSY---AIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPMLAL 86
Cdd:MTH00193   2 MMMLINFlllIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  87 LLALTIWIPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSGN 166
Cdd:MTH00193  82 FLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 167 YTLHTLSVTQEPLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTT 246
Cdd:MTH00193 162 FNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFV 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734738 247 ILFLNPSSLNMppqlftvILTTKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSM 314
Cdd:MTH00193 242 LMFLGGDLLSL-------LFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGL 302
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 9-313 3.80e-106

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 312.35  E-value: 3.80e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738   9 NMVMTLSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPMLALLL 88
Cdd:MTH00225   3 FLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLIL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  89 ALTIWIPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSGNYT 168
Cdd:MTH00225  83 SLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYN 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 169 LHTLSVTQEPLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTIL 248
Cdd:MTH00225 163 LFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSIL 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116734738 249 FLNPSSLNMPpqlftVILTTKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTS 313
Cdd:MTH00225 243 FFGGFFVTID-----LFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 13-324 1.14e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 308.97  E-value: 1.14e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  13 TLSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPMLALLLALTI 92
Cdd:MTH00054   8 ILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIA 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  93 W--IPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSGNYTLH 170
Cdd:MTH00054  88 WgvIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLT 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 171 TLSVTQEPLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFL 250
Cdd:MTH00054 168 EIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFL 247

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116734738 251 NPSSLNMPPQLF---TVILTTKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPTSYAGIPPA 324
Cdd:MTH00054 248 GGWLVISGPTSYfsnFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPPF 324
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 10-323 7.29e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 307.05  E-value: 7.29e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  10 MVMTLSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPMLALLLA 89
Cdd:MTH00216   9 LIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  90 LTIWIPLPLP--FSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSGNY 167
Cdd:MTH00216  89 LIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSL 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 168 TLHTLSVTQEP-LCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTT 246
Cdd:MTH00216 169 SITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTT 248

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734738 247 ILFLNpSSLNMPPQLF--TVILTTKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPTSYAGIPP 323
Cdd:MTH00216 249 ILFLG-GWLSPIKYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-306 4.95e-103

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 305.13  E-value: 4.95e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738   1 MSW--SPTLTNMVMTLSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLF 78
Cdd:COG1005    1 MSLllAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  79 TMTPMLALLLALTIWIPLPL--PFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAII 156
Cdd:COG1005   81 LLAPILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 157 LLSVILLSGNYTLHTLSVTQE-PLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEY 235
Cdd:COG1005  161 LLGVVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEY 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116734738 236 ANIMLMNTLTTILFL-------NPSSLNMPPQLFTVILttKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLA 306
Cdd:COG1005  241 ANMFLVSALATTLFLggwlgpfPILPLGGLPGILWFLL--KTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
18-310 4.14e-98

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 292.48  E-value: 4.14e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  18 IPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPMLALLLALTIWIPLP 97
Cdd:PRK06076  21 VVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIP 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  98 L--PFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSGNYTLHTLSVT 175
Cdd:PRK06076 101 FgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDIVEA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 176 QEPLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLN---- 251
Cdd:PRK06076 181 QFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLGgwlp 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116734738 252 --PSSLNMPPQLFTVIlttKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:PRK06076 261 pfPLGGGIPGAIWFVL---KVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-323 5.81e-87

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 264.57  E-value: 5.81e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738   1 MSWSPTLTNMVMTLSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTM 80
Cdd:MTH00029   1 MTIYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  81 TPMLALLLALTIW--IPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILL 158
Cdd:MTH00029  81 APIISFTLAILAWaiVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIII 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 159 SVILLSGNYTLHTLSVTQEPLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANI 238
Cdd:MTH00029 161 SVILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNI 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 239 MLMNTLTTILFLNP--SSLNMPPQLFTVILTTKVLLLSSG--------------FLWVRASYPRFRYDQLMHLLWKNFLP 302
Cdd:MTH00029 241 ILMSCMMTIFFLGGwlSPLDGIPTPPEAFSIFEQIASSKSsfwfftkssifilfFIWSRASFPRIRYDQLMKLLWKTYLP 320

                        330       340
                 ....*....|....*....|.
gi 116734738 303 LTLALCLWHTSMPTSYAGIPP 323
Cdd:MTH00029 321 LSLGLVILTAGILIGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 12-309 6.26e-81

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 248.16  E-value: 6.26e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  12 MTLSYaIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPMLALLLALT 91
Cdd:MTH00010   9 ILLSY-VMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  92 IWIPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSGNYTLHT 171
Cdd:MTH00010  88 LWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSK 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 172 LSVTQEPLCLIFSSwPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLN 251
Cdd:MTH00010 168 IIMSQYSWILLMII-PLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFTS 246

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 116734738 252 psslNMPPQLFT-VILTTKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCL 309
Cdd:MTH00010 247 ----FIPSIFISdLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM 301
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 12-305 2.47e-63

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 202.05  E-value: 2.47e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  12 MTLSYAIPILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPMLALLLALT 91
Cdd:MTH00090   1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  92 IWIPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSGNYTLht 171
Cdd:MTH00090  81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSF-- 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 172 lsVTQEPLCLIFSSWPLAMMwytsTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLN 251
Cdd:MTH00090 159 --VSSFSLSLFVIYLPFLIM----IIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 116734738 252 PSSLNmppqlftvilttkVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTL 305
Cdd:MTH00090 233 FSFLM-------------LFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
 18-313 3.00e-50

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 170.52  E-value: 3.00e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  18 IPILVAVAFLTL-------VERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPMLA---LL 87
Cdd:CHL00032  31 VPILTLVLGITIgvlvivwLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAvisIL 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  88 LALTIwIPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSGny 167
Cdd:CHL00032 111 LSYLV-IPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSN-- 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 168 TLHTLSVTQEPLCLIFSSWPL------AMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLM 241
Cdd:CHL00032 188 SLSTVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVS 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 242 NTLTTILFLNPSSLNMP----PQLFTVILTTKVLLLSSGFLWV--------------RASYPRFRYDQLMHLLWKNFLPL 303
Cdd:CHL00032 268 SLFVTVLYLGGWNLSIPyifiPELFEINKTGGVFGTTIGIFITlaktylflfisittRWTLPRLRMDQLLNLGWKFLLPI 347

                        330
                 ....*....|
gi 116734738 304 TLALCLWHTS 313
Cdd:CHL00032 348 SLGNLLLTTS 357
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 20-305 4.88e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 162.79  E-value: 4.88e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  20 ILVAVAFLTLVERKVLSYMQSRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPFLFTMTPMLALLLALTIWIPLPLP 99
Cdd:MTH00058  14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 100 FSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLSGNYTLHTLSVTQEPL 179
Cdd:MTH00058  94 YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLS 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 180 CLIFssWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTTILFLNpSSLNMPP 259
Cdd:MTH00058 174 VLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFG-GGFVSIM 250

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 116734738 260 QLFTVILttkvlllssgFLWVRASYPRFRYDQLMHLLWKNFLPLTL 305
Cdd:MTH00058 251 LLFHLLF----------FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
7-310 2.93e-32

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 121.83  E-value: 2.93e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738   7 LTNMVMTLSYAIPILVAVAFLTLVERKVLSYMQSRKGPnivgpfGLLQPVADGVKLFIKEPIRPSTSSpFLFTMTPMLAL 86
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETAS-WLFRAAPYVAL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738  87 --LLALTIWIPLPLPFSLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVILLS 164
Cdd:COG0650   74 aaMLLAALLVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLA 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116734738 165 GNYTLHTLSVTQE---PLCLIFSSWPLAMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLM 241
Cdd:COG0650  154 GSTSLSDIVAYQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVL 233

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116734738 242 NTLTTILFLnPSSLNMPPQLFTVILTTKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:COG0650  234 LSLFVNLFL-PWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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