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Conserved domains on  [gi|1162465010|ref|XP_020406307|]
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uncharacterized protein LOC103651765 [Zea mays]

Protein Classification

transposase family protein( domain architecture ID 229435)

transposase family protein might bind to the end of a transposon and catalyze the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0004803
PubMed:  20615441

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDE_Tnp_1_3 super family cl46860
Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. ...
 194-301 4.11e-60

Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.


The actual alignment was detected with superfamily member pfam04827:

Pssm-ID: 481200  Cd Length: 205  Bit Score: 192.89  E-value: 4.11e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162465010 194 AEGEGPQVKYNINGHDYSMGYYLADGIYPSWATFVKTIPEPQGNKKKYFAKAQEACRKDVERAFGVLQSRFAIVRGPARL 273
Cdd:pfam04827  98 LQGTAPRVRYTVNGRQYNMGYYLADGIYPEWATFVKSIRLPQLEKHKLFAQQQEACRKDVERAFGVLQARFKIVATPARL 177

                          90       100
                  ....*....|....*....|....*...
gi 1162465010 274 WDEDTLHDIMMACIILHNMIVEDERDEY 301
Cdd:pfam04827 178 WNQSDLSNIMTACIILHNMIVEDERDLD 205
 
Name Accession Description Interval E-value
Plant_tran pfam04827
Plant transposon protein; This family contains plant transposases which are putative members ...
 194-301 4.11e-60

Plant transposon protein; This family contains plant transposases which are putative members of the PIF / Ping-Pong family.


Pssm-ID: 203098  Cd Length: 205  Bit Score: 192.89  E-value: 4.11e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162465010 194 AEGEGPQVKYNINGHDYSMGYYLADGIYPSWATFVKTIPEPQGNKKKYFAKAQEACRKDVERAFGVLQSRFAIVRGPARL 273
Cdd:pfam04827  98 LQGTAPRVRYTVNGRQYNMGYYLADGIYPEWATFVKSIRLPQLEKHKLFAQQQEACRKDVERAFGVLQARFKIVATPARL 177

                          90       100
                  ....*....|....*....|....*...
gi 1162465010 274 WDEDTLHDIMMACIILHNMIVEDERDEY 301
Cdd:pfam04827 178 WNQSDLSNIMTACIILHNMIVEDERDLD 205
 
Name Accession Description Interval E-value
Plant_tran pfam04827
Plant transposon protein; This family contains plant transposases which are putative members ...
 194-301 4.11e-60

Plant transposon protein; This family contains plant transposases which are putative members of the PIF / Ping-Pong family.


Pssm-ID: 203098  Cd Length: 205  Bit Score: 192.89  E-value: 4.11e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162465010 194 AEGEGPQVKYNINGHDYSMGYYLADGIYPSWATFVKTIPEPQGNKKKYFAKAQEACRKDVERAFGVLQSRFAIVRGPARL 273
Cdd:pfam04827  98 LQGTAPRVRYTVNGRQYNMGYYLADGIYPEWATFVKSIRLPQLEKHKLFAQQQEACRKDVERAFGVLQARFKIVATPARL 177

                          90       100
                  ....*....|....*....|....*...
gi 1162465010 274 WDEDTLHDIMMACIILHNMIVEDERDEY 301
Cdd:pfam04827 178 WNQSDLSNIMTACIILHNMIVEDERDLD 205
DDE_Tnp_4 pfam13359
DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are ...
 253-291 5.60e-05

DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.


Pssm-ID: 463855 [Multi-domain]  Cd Length: 158  Bit Score: 43.03  E-value: 5.60e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1162465010 253 VERAFGVLQSRFAIVRGPARLWDEDTLHDIMMACIILHN 291
Cdd:pfam13359 120 VERVIGRLKGRFRILRGRLPISLPERLDKIVTVCCVLHN 158
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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