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Conserved domains on  [gi|1162457081|ref|XP_020404214|]
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pentatricopeptide repeat-containing protein At1g63070, mitochondrial [Zea mays]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 205-573 1.26e-27

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 119.60  E-value: 1.26e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  205 PSPNVCSYSILMSMYTHGERSclEEAFELLCEMESNGVRPNATTYGTYLYGLCRSRQVTSAWDFLQTLSQSGGPCSNYCF 284
Cdd:PLN03218   433 RNPTLSTFNMLMSVCASSQDI--DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF 510

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  285 NAVIHGFCCEGQVDKAIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMARNG--ICPNQVSYSSLLHGLC 362
Cdd:PLN03218   511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACA 590

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  363 KTGQVALALKIFKNLQDHGFEHDQINYSIILHGCCQHLDLKAISDLWFDMIHHNIAPDVYNYTSLIYALCRHRNLQDALG 442
Cdd:PLN03218   591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  443 VFELMLENGLSPNIVTCTILVDSFSKQGLVGEAF-LFLDRmhQSLGIVPNLCMYRVMINGLCKTNKYSGVWNVFADMIKR 521
Cdd:PLN03218   671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALeLYEDI--KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1162457081  522 GYVPDVVLYSIIIEGFVKALKLQEALRLYHKMLDEGVKPNIFTYSSLInGLC 573
Cdd:PLN03218   749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 596-644 3.15e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.53  E-value: 3.15e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1162457081 596 DNVLYTSIIACYCRRLNMKAAMEWLKEMERSGVLPDAFVYTCMIDGYSK 644
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 630-679 6.46e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.06  E-value: 6.46e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1162457081 630 PDAFVYTCMIDGYSKLPAMDAARLMMEEMEKRKLKPTIVTYTALIIGYLK 679
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 super family cl38385
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 665-701 1.21e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam13041:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 42.74  E-value: 1.21e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1162457081 665 PTIVTYTALIIGYLKMGDEKEACMMYESMRHVGIAPD 701
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPN 37
PPR_2 super family cl38385
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 177-219 8.16e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam13041:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.42  E-value: 8.16e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1162457081 177 CNFLLKCLVEGNQIMYARSLFDDMKSCGPSPNVCSYSILMSMY 219
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 563-593 5.51e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


:

Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.75  E-value: 5.51e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1162457081 563 FTYSSLINGLCNDDRLPEAMGLIRDMIGEDL 593
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 205-573 1.26e-27

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 119.60  E-value: 1.26e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  205 PSPNVCSYSILMSMYTHGERSclEEAFELLCEMESNGVRPNATTYGTYLYGLCRSRQVTSAWDFLQTLSQSGGPCSNYCF 284
Cdd:PLN03218   433 RNPTLSTFNMLMSVCASSQDI--DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF 510

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  285 NAVIHGFCCEGQVDKAIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMARNG--ICPNQVSYSSLLHGLC 362
Cdd:PLN03218   511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACA 590

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  363 KTGQVALALKIFKNLQDHGFEHDQINYSIILHGCCQHLDLKAISDLWFDMIHHNIAPDVYNYTSLIYALCRHRNLQDALG 442
Cdd:PLN03218   591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  443 VFELMLENGLSPNIVTCTILVDSFSKQGLVGEAF-LFLDRmhQSLGIVPNLCMYRVMINGLCKTNKYSGVWNVFADMIKR 521
Cdd:PLN03218   671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALeLYEDI--KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1162457081  522 GYVPDVVLYSIIIEGFVKALKLQEALRLYHKMLDEGVKPNIFTYSSLInGLC 573
Cdd:PLN03218   749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 525-574 6.56e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 72.01  E-value: 6.56e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1162457081 525 PDVVLYSIIIEGFVKALKLQEALRLYHKMLDEGVKPNIFTYSSLINGLCN 574
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 596-644 3.15e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.53  E-value: 3.15e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1162457081 596 DNVLYTSIIACYCRRLNMKAAMEWLKEMERSGVLPDAFVYTCMIDGYSK 644
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 630-679 6.46e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.06  E-value: 6.46e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1162457081 630 PDAFVYTCMIDGYSKLPAMDAARLMMEEMEKRKLKPTIVTYTALIIGYLK 679
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 282-316 2.12e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.45  E-value: 2.12e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1162457081 282 YCFNAVIHGFCCEGQVDKAIEVFHGMKKCGYVPDV 316
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 665-701 1.21e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 42.74  E-value: 1.21e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1162457081 665 PTIVTYTALIIGYLKMGDEKEACMMYESMRHVGIAPD 701
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPN 37
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 668-701 6.64e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.52  E-value: 6.64e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1162457081 668 VTYTALIIGYLKMGDEKEACMMYESMRHVGIAPD 701
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 598-632 8.00e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.13  E-value: 8.00e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1162457081 598 VLYTSIIACYCRRLNMKAAMEWLKEMERSGVLPDA 632
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 177-219 8.16e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.42  E-value: 8.16e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1162457081 177 CNFLLKCLVEGNQIMYARSLFDDMKSCGPSPNVCSYSILMSMY 219
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 563-593 5.51e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.75  E-value: 5.51e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1162457081 563 FTYSSLINGLCNDDRLPEAMGLIRDMIGEDL 593
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 205-573 1.26e-27

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 119.60  E-value: 1.26e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  205 PSPNVCSYSILMSMYTHGERSclEEAFELLCEMESNGVRPNATTYGTYLYGLCRSRQVTSAWDFLQTLSQSGGPCSNYCF 284
Cdd:PLN03218   433 RNPTLSTFNMLMSVCASSQDI--DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF 510

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  285 NAVIHGFCCEGQVDKAIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMARNG--ICPNQVSYSSLLHGLC 362
Cdd:PLN03218   511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACA 590

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  363 KTGQVALALKIFKNLQDHGFEHDQINYSIILHGCCQHLDLKAISDLWFDMIHHNIAPDVYNYTSLIYALCRHRNLQDALG 442
Cdd:PLN03218   591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  443 VFELMLENGLSPNIVTCTILVDSFSKQGLVGEAF-LFLDRmhQSLGIVPNLCMYRVMINGLCKTNKYSGVWNVFADMIKR 521
Cdd:PLN03218   671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALeLYEDI--KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1162457081  522 GYVPDVVLYSIIIEGFVKALKLQEALRLYHKMLDEGVKPNIFTYSSLInGLC 573
Cdd:PLN03218   749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 227-710 4.57e-25

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 111.51  E-value: 4.57e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  227 LEEAFELLCEMESNGVRPNATTYGTYLYGLCRS-RQVTSAWDFLQ-----TLSQsggpcsnycFNAVIhGFCCEGQ-VDK 299
Cdd:PLN03218   386 IKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKqRAVKEAFRFAKlirnpTLST---------FNMLM-SVCASSQdIDG 455

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  300 AIEVFHGMKKCGYVPDVHSYSILVDGLCKQG--DLLkgYDMLEEMARNGICPNQVSYSSLLHGLCKTGQVALALKIFKNL 377
Cdd:PLN03218   456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGkvDAM--FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  378 QDHGFEHDQINYSIILHGCCQHLDLKAISDLWFDMIH--HNIAPDVYNYTSLIYALCRHRNLQDALGVFELMLENGLSPN 455
Cdd:PLN03218   534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAetHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  456 IVTCTILVDSFSKQGLVGEAFLFLDRMHQSlGIVPNLCMYRVMINGLCKTNKYSGVWNVFADMIKRGYVPDVVLYSIIIE 535
Cdd:PLN03218   614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  536 GFVKALKLQEALRLYHKMLDEGVKPNIFTYSSLINGLCNDDRLPEAMglirdmigedllldnvlytsiiacycrrlnmka 615
Cdd:PLN03218   693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL--------------------------------- 739

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  616 amEWLKEMERSGvlpdafvytcmidgysklpamdaarlmmeemekrkLKPTIVTYTALIIGYLKMGDEKEACMMYESMRH 695
Cdd:PLN03218   740 --EVLSEMKRLG-----------------------------------LCPNTITYSILLVASERKDDADVGLDLLSQAKE 782

                          490
                   ....*....|....*.
gi 1162457081  696 VGIAPDGKLC-CILGI 710
Cdd:PLN03218   783 DGIKPNLVMCrCITGL 798
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 222-593 8.92e-24

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 107.66  E-value: 8.92e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  222 GERSCLEEAFELLCEM--ESNGVRPNATTYGTYLYGLCRSRQVTSAWDFLQTLSQSGGPCSNYCFNAVIHGFCCEGQVDK 299
Cdd:PLN03218   553 GQSGAVDRAFDVLAEMkaETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  300 AIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMARNGICPNQVSYSSLLHGLCKTGQVALALKIFKnlqd 379
Cdd:PLN03218   633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE---- 708

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  380 hgfehdqinysiilhgccqhlDLKAIsdlwfdmihhNIAPDVYNYTSLIYALCRHRNLQDALGVFELMLENGLSPNIVTC 459
Cdd:PLN03218   709 ---------------------DIKSI----------KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  460 TILVDSFSKQglvGEAFLFLDRMHQSL--GIVPNLCMYRVMInGLCktnkysgvwnvfadmiKRGYVPDVVLYSIIIEgf 537
Cdd:PLN03218   758 SILLVASERK---DDADVGLDLLSQAKedGIKPNLVMCRCIT-GLC----------------LRRFEKACALGEPVVS-- 815

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1162457081  538 VKALKLQ-------EALRLYHKMLDEGVKPNIFTYSSLINGLcnddRLPEAMGLiRDMIGEDL 593
Cdd:PLN03218   816 FDSGRPQienkwtsWALMVYRETISAGTLPTMEVLSQVLGCL----QLPHDATL-RNRLIENL 873
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 192-401 4.91e-18

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 89.17  E-value: 4.91e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  192 YARSLFDDMKSCGPSPNVCSYSILMSMYTHGERscLEEAFELLCEMESNGVRPNATTYGTYLyglcrsrqvtsawdflqt 271
Cdd:PLN03218   632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD--LDKAFEILQDARKQGIKLGTVSYSSLM------------------ 691

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  272 lsqsgGPCSNycfnavihgfccEGQVDKAIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMARNGICPNQ 351
Cdd:PLN03218   692 -----GACSN------------AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1162457081  352 VSYSSLLHGLCKTGQVALALKIFKNLQDHGFEHDQINYSIILHGCCQHLD 401
Cdd:PLN03218   755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFE 804
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 525-574 6.56e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 72.01  E-value: 6.56e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1162457081 525 PDVVLYSIIIEGFVKALKLQEALRLYHKMLDEGVKPNIFTYSSLINGLCN 574
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03077 PLN03077
Protein ECB2; Provisional
 178-674 1.17e-15

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 81.05  E-value: 1.17e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 178 NFLLKCLVEGNQIMYARSLFDDMkscgPSPNVCSYSILMSMYThgERSCLEEAFELLCEMESNGVRPNATTYGTylyglc 257
Cdd:PLN03077  226 NALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYF--ENGECLEGLELFFTMRELSVDPDLMTITS------ 293

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 258 rsrqVTSAWDFL---------QTLSQSGGPCSNYCF-NAVIHGFCCEGQVDKAIEVFHGMKkcgyVPDVHSYSILVDGLC 327
Cdd:PLN03077  294 ----VISACELLgderlgremHGYVVKTGFAVDVSVcNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYE 365

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 328 KQGDLLKGYDMLEEMARNGICPNQVSYSSLLHGLCKTGQVALALKIFKNLQDHGFehdqINYSII------LHGCCQHLD 401
Cdd:PLN03077  366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL----ISYVVVanalieMYSKCKCID 441

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 402 lKAISdlwfdmIHHNIA-PDVYNYTSLIYALC-RHRNLQdALGVFELMLENgLSPNIVTctiLVDSFSKQGLVGeAFLFL 479
Cdd:PLN03077  442 -KALE------VFHNIPeKDVISWTSIIAGLRlNNRCFE-ALIFFRQMLLT-LKPNSVT---LIAALSACARIG-ALMCG 508

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 480 DRMHQSL--------GIVPN--LCMYrvminglCKTNKYSGVWNVFADMIKrgyvpDVVLYSIIIEGFVKALKLQEALRL 549
Cdd:PLN03077  509 KEIHAHVlrtgigfdGFLPNalLDLY-------VRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVEL 576

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 550 YHKMLDEGVKPNIFTYSSLInglcnddrlpeamglirdmigedllldnvlytsiiaCYCRRLNM-KAAMEWLKEMERS-G 627
Cdd:PLN03077  577 FNRMVESGVNPDEVTFISLL------------------------------------CACSRSGMvTQGLEYFHSMEEKyS 620

                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*..
gi 1162457081 628 VLPDAFVYTCMIDGYSKLPAMDAARLMMEEMekrKLKPTIVTYTALI 674
Cdd:PLN03077  621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALL 664
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 122-585 1.89e-14

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 77.22  E-value: 1.89e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 122 ELFELApmlvsNLGQSMTL-LQVYAAVIR--IFVESSMFEDALLTYIQAKNIGVDRRLCNFLLKCLVEGNQIMYARSLFD 198
Cdd:PLN03081  108 ELFEIL-----EAGCPFTLpASTYDALVEacIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 199 DMkscgPSPNVCSYSILMSMYThgERSCLEEAFELLCEMESNGVRPNATTYGTYLyglcrsRQVTSAWDF-----LQTLS 273
Cdd:PLN03081  183 EM----PERNLASWGTIIGGLV--DAGNYREAFALFREMWEDGSDAEPRTFVVML------RASAGLGSAragqqLHCCV 250

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 274 QSGGPCSN-YCFNAVIHGFCCEGQVDKAIEVFHGMKKCGYVpdvhSYSILVDGLCKQGDLLKGYDMLEEMARNGICPNQV 352
Cdd:PLN03081  251 LKTGVVGDtFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 353 SYSSLLHGLCKTGQVALALKIFKNLQDHGFEHDQINYSIILHGCCQHLDLKAISDLWFDMIHHNIApdvyNYTSLIYALC 432
Cdd:PLN03081  327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYG 402

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 433 RHRNLQDALGVFELMLENGLSPNIVTCTILVDSFSKQGLVGEAFLFLDRMHQSLGIVPNLCMYRVMINGLCKtnkySGVW 512
Cdd:PLN03081  403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----EGLL 478

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1162457081 513 NVFADMIKRG-YVPDVVLYSIIIegfvKALKLQEALRLyHKMLDE---GVKP-NIFTYSSLINGLCNDDRLPEAMGLI 585
Cdd:PLN03081  479 DEAYAMIRRApFKPTVNMWAALL----TACRIHKNLEL-GRLAAEklyGMGPeKLNNYVVLLNLYNSSGRQAEAAKVV 551
PLN03077 PLN03077
Protein ECB2; Provisional
 282-701 2.28e-14

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 77.20  E-value: 2.28e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 282 YCFNAVIHGFCCEGQVDKAIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMARNGICPNQVSYSSLLHGL 361
Cdd:PLN03077  153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 362 CKTGQVALALKIFknlqDHGFEHDQINYSIILHGCCQHLDLKAISDLWFDMIHHNIAPDVYNYTSLIYALCRHRNLQDAL 441
Cdd:PLN03077  233 VKCGDVVSARLVF----DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 442 GVFELMLENGLSPNIVTCTILVDSFSKQGLVGEAFLFLDRMHQSlgivpNLCMYRVMINGLCKTNKYSGVWNVFADMIKR 521
Cdd:PLN03077  309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-----DAVSWTAMISGYEKNGLPDKALETYALMEQD 383

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 522 GYVPD-----------------------------------VVLYSIIIEGFVKALKLQEALRLYHKMLDEgvkpNIFTYS 566
Cdd:PLN03077  384 NVSPDeitiasvlsacaclgdldvgvklhelaerkglisyVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWT 459

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 567 SLINGLCNDDRLPEAMGLIRDMIGeDLLLDNVLYTSIIACYCRRLNMKAAMEWLKEMERSGVLPDAFVYTCMIDGYSKLP 646
Cdd:PLN03077  460 SIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1162457081 647 AMDAARLMMEEMEKrklkpTIVTYTALIIGYLKMGDEKEACMMYESMRHVGIAPD 701
Cdd:PLN03077  539 RMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 283-328 3.84e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 64.31  E-value: 3.84e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1162457081 283 CFNAVIHGFCCEGQVDKAIEVFHGMKKCGYVPDVHSYSILVDGLCK 328
Cdd:pfam13041   5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 314-363 4.49e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 63.92  E-value: 4.49e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1162457081 314 PDVHSYSILVDGLCKQGDLLKGYDMLEEMARNGICPNQVSYSSLLHGLCK 363
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 370-701 6.13e-13

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 72.21  E-value: 6.13e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 370 ALKIFKNLQDHG-FEHDQINYSIILHGCCQHLDLKAISDLWFDMIHHNIAPDVY--NYTSLIYALCRHrnLQDALGVFEL 446
Cdd:PLN03081  106 ALELFEILEAGCpFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYmmNRVLLMHVKCGM--LIDARRLFDE 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 447 MLENglspNIVTCTILVDSFSKQGLVGEAFLFLDRMHQSLGIVPNLcMYRVMINGLcktnkySGVWNVFAD------MIK 520
Cdd:PLN03081  184 MPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR-TFVVMLRAS------AGLGSARAGqqlhccVLK 252

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 521 RGYVPDVVLYSIIIEGFVKALKLQEALRLYHKMLDEGVkpniFTYSSLINGLCNDDRLPEAMGLIRDMIGEDLLLDNVLY 600
Cdd:PLN03081  253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 601 TSIIACYCRRLNMKAAMEWLKEMERSGVLPDAFVYTCMIDGYSKLPAMDAARLMMEEMEKRklkpTIVTYTALIIGYLKM 680
Cdd:PLN03081  329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNH 404

                         330       340
                  ....*....|....*....|.
gi 1162457081 681 GDEKEACMMYESMRHVGIAPD 701
Cdd:PLN03081  405 GRGTKAVEMFERMIAEGVAPN 425
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 282-698 6.68e-13

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 72.21  E-value: 6.68e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 282 YCFNAVIHGFCCEGQVDKAIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMARNGICPNQVSYSSLLHGL 361
Cdd:PLN03081  190 ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 362 CKTGQVALALKIFKNL-QDHGFEHDQINYSIILHGCCQhldlKAIsDLWFDMIHHNIAPDVYNYTSLIYALCRHRNLQDA 440
Cdd:PLN03081  270 SKCGDIEDARCVFDGMpEKTTVAWNSMLAGYALHGYSE----EAL-CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 441 LGVFELMLENGLSPNIVTCTILVDSFSKQGLVGEAFLFLDRMHQSlgivpNLCMYRVMINGLCKTNKYSGVWNVFADMIK 520
Cdd:PLN03081  345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-----NLISWNALIAGYGNHGRGTKAVEMFERMIA 419

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 521 RGYVPDVVLYSIIIEGFVKALKLQEALRLYHKML-DEGVKPNIFTYSSLINGLCNDDRLPEAMGLIRDmigedllldnvl 599
Cdd:PLN03081  420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSeNHRIKPRAMHYACMIELLGREGLLDEAYAMIRR------------ 487

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 600 ytsiiACYCRRLNMKAAMewlkemersgvlpdafVYTCMIDGYSKLPAMDAARLMMEEMEKrklkptIVTYTALIIGYLK 679
Cdd:PLN03081  488 -----APFKPTVNMWAAL----------------LTACRIHKNLELGRLAAEKLYGMGPEK------LNNYVVLLNLYNS 540

                         410
                  ....*....|....*....
gi 1162457081 680 MGDEKEACMMYESMRHVGI 698
Cdd:PLN03081  541 SGRQAEAAKVVETLKRKGL 559
PLN03077 PLN03077
Protein ECB2; Provisional
 355-701 2.39e-12

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 70.65  E-value: 2.39e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 355 SSLLHGLCKTGQVALALKIFKNLQDHGFEHDQINYSIILHGCCQHLDLKAISDLWFDMIHHNIAPDVYNYTSLIYALCRH 434
Cdd:PLN03077   55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 435 RNLQDALGVFELMLENglspNIVTCTILVDSFSKQGLVGEAFLFLDRMHQSlGIVPNLCMYRVMINGLCKTNKYSGVWNV 514
Cdd:PLN03077  135 GELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREV 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 515 FADMIKRGYVPDVVLYSIIIEGFVKALKLQEALRLYHKMldegVKPNIFTYSSLINGLCNDDRLPEAMGLIRDMIGEDLL 594
Cdd:PLN03077  210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 595 LDNVLYTSII-ACycrrlNMKAAMEWLKEME----RSGVLPDAFVYTCMIDGYSKLPAMDAARLMMEEMEKRKlkptIVT 669
Cdd:PLN03077  286 PDLMTITSVIsAC-----ELLGDERLGREMHgyvvKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD----AVS 356

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1162457081 670 YTALIIGYLKMGDEKEACMMYESMRHVGIAPD 701
Cdd:PLN03077  357 WTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
PLN03077 PLN03077
Protein ECB2; Provisional
 117-518 5.26e-12

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 69.49  E-value: 5.26e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 117 GNAGSELF------ELAPMLvsnlgqsMTLLQVYAAvirifveSSMFEDALL-----TYIQAKNIGVDRRLCNFLLKCLV 185
Cdd:PLN03077  269 CLEGLELFftmrelSVDPDL-------MTITSVISA-------CELLGDERLgremhGYVVKTGFAVDVSVCNSLIQMYL 334

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 186 EGNQIMYARSLFDDMKScgpsPNVCSYSILMSMYthgERSCL-EEAFELLCEMESNGVRPNATTYGTYLYGlCRSRQVTS 264
Cdd:PLN03077  335 SLGSWGEAEKVFSRMET----KDAVSWTAMISGY---EKNGLpDKALETYALMEQDNVSPDEITIASVLSA-CACLGDLD 406

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 265 AWDFLQTLSQSGGPCSnYCF--NAVIHGFCCEGQVDKAIEVFHGMKKcgyvPDVHSYSILVDGLCKQGDLLKGYDMLEEM 342
Cdd:PLN03077  407 VGVKLHELAERKGLIS-YVVvaNALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQM 481

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 343 ARNgICPNQVSYSSLLHGLCKTGqvalALKIFKNLQDH------GFEHDQINYSIILHGCCQHLDLKaisdlWFDMIHHn 416
Cdd:PLN03077  482 LLT-LKPNSVTLIAALSACARIG----ALMCGKEIHAHvlrtgiGFDGFLPNALLDLYVRCGRMNYA-----WNQFNSH- 550

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 417 iAPDVYNYTSLIYALCRHRNLQDALGVFELMLENGLSPNIVTCTILVDSFSKQGLVGEAFLFLDRMHQSLGIVPNLCMYR 496
Cdd:PLN03077  551 -EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629

                         410       420
                  ....*....|....*....|..
gi 1162457081 497 VMINGLCKTNKYSGVWNVFADM 518
Cdd:PLN03077  630 CVVDLLGRAGKLTEAYNFINKM 651
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 596-644 3.15e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.53  E-value: 3.15e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1162457081 596 DNVLYTSIIACYCRRLNMKAAMEWLKEMERSGVLPDAFVYTCMIDGYSK 644
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 419-468 1.38e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 56.99  E-value: 1.38e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1162457081 419 PDVYNYTSLIYALCRHRNLQDALGVFELMLENGLSPNIVTCTILVDSFSK 468
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 630-679 6.46e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.06  E-value: 6.46e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1162457081 630 PDAFVYTCMIDGYSKLPAMDAARLMMEEMEKRKLKPTIVTYTALIIGYLK 679
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 490-539 6.46e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.06  E-value: 6.46e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1162457081 490 PNLCMYRVMINGLCKTNKYSGVWNVFADMIKRGYVPDVVLYSIIIEGFVK 539
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 349-398 1.20e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 54.29  E-value: 1.20e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1162457081 349 PNQVSYSSLLHGLCKTGQVALALKIFKNLQDHGFEHDQINYSIILHGCCQ 398
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 207-258 6.32e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 52.37  E-value: 6.32e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1162457081 207 PNVCSYSILMSMYTHGERscLEEAFELLCEMESNGVRPNATTYGTYLYGLCR 258
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGK--VEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 454-504 6.84e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 51.98  E-value: 6.84e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1162457081 454 PNIVTCTILVDSFSKQGLVGEAFLFLDRMhQSLGIVPNLCMYRVMINGLCK 504
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEM-KKRGVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 411-458 3.11e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 50.82  E-value: 3.11e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1162457081 411 DMIHHNIAPDVYNYTSLIYALCRHRNLQDALGVFELMLENGLSPNIVT 458
Cdd:pfam13812   5 EMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDT 52
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 178-260 6.49e-08

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 56.42  E-value: 6.49e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081  178 NFLLKCLVEGNQIMYARSLFDDMKSCGPSPNVCSYSILMsmythgeRSC-----LEEAFELLCEMESNGVRPNATTYGTy 252
Cdd:PLN03218   723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL-------VASerkddADVGLDLLSQAKEDGIKPNLVMCRC- 794


                   ....*...
gi 1162457081  253 LYGLCRSR 260
Cdd:PLN03218   795 ITGLCLRR 802
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 353-700 9.02e-08

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 55.65  E-value: 9.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 353 SYSSLLHGLCKTGQVALALKIFKNLQDHGFEHDQ--INYSIILHGCCQHL-DLKAISDlwfDMIHHNIapdvYNYTSLIY 429
Cdd:PLN03081  125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQymMNRVLLMHVKCGMLiDARRLFD---EMPERNL----ASWGTIIG 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 430 ALCRHRNLQDALGVFELMLENGLSPNIVTCTILVDSFSKQGLVGEAflflDRMH---QSLGIVPNLCMYRVMINGLCKTN 506
Cdd:PLN03081  198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG----QQLHccvLKTGVVGDTFVSCALIDMYSKCG 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 507 KYSGVWNVFADMIKRgyvpDVVLYSIIIEGFVKALKLQEALRLYHKMLDEGVKPNIFTYSSLINGLCNDDRLPEA----M 582
Cdd:PLN03081  274 DIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAkqahA 349

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 583 GLIRDMIGedllLDNVLYTSIIACYCRRLNMKAAMEWLKEMERSGVLPdafvYTCMIDGYSKLPAMDAARLMMEEMEKRK 662
Cdd:PLN03081  350 GLIRTGFP----LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS----WNALIAGYGNHGRGTKAVEMFERMIAEG 421

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1162457081 663 LKPTIVTYTALIIGYLKMGDEKEACMMYESMRHV-GIAP 700
Cdd:PLN03081  422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENhRIKP 460
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 556-588 1.69e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 47.73  E-value: 1.69e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1162457081 556 EGVKPNIFTYSSLINGLCNDDRLPEAMGLIRDM 588
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 282-316 2.12e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.45  E-value: 2.12e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1162457081 282 YCFNAVIHGFCCEGQVDKAIEVFHGMKKCGYVPDV 316
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 546-700 3.42e-07

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 51.63  E-value: 3.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 546 ALRLYHKMLDEGVKPNIFTYSSLINGLCNDDRLPEAMglirdmigedllldnvlytsiiacycRRLNMKAAMEWLKEMER 625
Cdd:pfam17177  30 ALALYDAAKAEGVRLAQYHYNVLLYLCSKAADATDLK--------------------------PQLAADRGFEVFEAMKA 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1162457081 626 SGVLPDAFVYTCMIDGYSKLPAMDAARLMMEEMEKRKLKPTIVTYTALIIGYLKMGDEKEACMMYESMRHVGIAP 700
Cdd:pfam17177  84 QGVSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVEL 158
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 311-342 4.24e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 46.57  E-value: 4.24e-07
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1162457081 311 GYVPDVHSYSILVDGLCKQGDLLKGYDMLEEM 342
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 514-570 6.61e-07

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 46.97  E-value: 6.61e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1162457081 514 VFADMIKRGYVPDVVLYSIIIEGFVKALKLQEALRLYHKMLDEGVKPNIFTYSSLIN 570
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 193-351 1.08e-06

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 50.09  E-value: 1.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 193 ARSLFDDMKSCGPSPNVCSYSILMSMYTHGE-------RSCLEEAFELLCEMESNGVRPNATTYgTYLYGLC-RSRQVTS 264
Cdd:pfam17177  30 ALALYDAAKAEGVRLAQYHYNVLLYLCSKAAdatdlkpQLAADRGFEVFEAMKAQGVSPNEATY-TAVARLAaAKGDGDL 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 265 AWDFLQTLSQSGGPCSNYCFNAVIHGFCCEGQVDKAIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMAR 344
Cdd:pfam17177 109 AFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRADKVYAYLHRLRD 188


                  ....*..
gi 1162457081 345 NGICPNQ 351
Cdd:pfam17177 189 AVRQVSE 195
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 328-489 5.12e-06

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 48.16  E-value: 5.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 328 KQGDLLKGYDMLEEMARNGICPNQVSYSSLLHgLCKTGQVALALK----------IFKNLQDHGFEHDQINYSIILHGCC 397
Cdd:pfam17177  23 KHADATGALALYDAAKAEGVRLAQYHYNVLLY-LCSKAADATDLKpqlaadrgfeVFEAMKAQGVSPNEATYTAVARLAA 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 398 QhldlKAISDLWFDMIHH----NIAPDVYNYTSLIYALCRHRNLQDALGVFELMLENGLSPNIVTCTILVDSFSKQGLVG 473
Cdd:pfam17177 102 A----KGDGDLAFDLVKEmeaaGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVSAKAGRAD 177

                         170
                  ....*....|....*.
gi 1162457081 474 EAFLFLDRMHQSLGIV 489
Cdd:pfam17177 178 KVYAYLHRLRDAVRQV 193
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 620-680 9.63e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 43.50  E-value: 9.63e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1162457081 620 LKEMERSGVLPDAFVYTCMIDGYSKLPAMDAARLMMEEMEKRKLKPTIVTYTALIIGYLKM 680
Cdd:pfam13812   3 LREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 424-456 9.79e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.83  E-value: 9.79e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1162457081 424 YTSLIYALCRHRNLQDALGVFELMLENGLSPNI 456
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 665-701 1.21e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 42.74  E-value: 1.21e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1162457081 665 PTIVTYTALIIGYLKMGDEKEACMMYESMRHVGIAPD 701
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPN 37
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 282-308 1.45e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 42.33  E-value: 1.45e-05
                          10        20
                  ....*....|....*....|....*..
gi 1162457081 282 YCFNAVIHGFCCEGQVDKAIEVFHGMK 308
Cdd:pfam12854   8 VTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 230-393 1.94e-05

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 46.24  E-value: 1.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 230 AFELLCEMESNGVRPNATTYGTYLYgLCrsrqvtsawdflqtlSQSGGPCSNYCFNAVIHGFccegqvdkaiEVFHGMKK 309
Cdd:pfam17177  30 ALALYDAAKAEGVRLAQYHYNVLLY-LC---------------SKAADATDLKPQLAADRGF----------EVFEAMKA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 310 CGYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMARNGICPNQVSYSSLLHGLCKTGQVALALKIFKNLQDHGFEHDQINY 389
Cdd:pfam17177  84 QGVSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPEL 163


                  ....
gi 1162457081 390 SIIL 393
Cdd:pfam17177 164 AALL 167
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 317-350 2.69e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 41.67  E-value: 2.69e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1162457081 317 HSYSILVDGLCKQGDLLKGYDMLEEMARNGICPN 350
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 450-482 2.99e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 41.18  E-value: 2.99e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1162457081 450 NGLSPNIVTCTILVDSFSKQGLVGEAFLFLDRM 482
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 653-700 3.77e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 41.96  E-value: 3.77e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1162457081 653 LMMEEMEKRKLKPTIVTYTALIIGYLKMGDEKEACMMYESMRHVGIAP 700
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKP 48
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 493-527 3.98e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.90  E-value: 3.98e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1162457081 493 CMYRVMINGLCKTNKYSGVWNVFADMIKRGYVPDV 527
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 345-375 4.47e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 40.79  E-value: 4.47e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1162457081 345 NGICPNQVSYSSLLHGLCKTGQVALALKIFK 375
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLD 31
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 388-556 4.72e-05

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 45.08  E-value: 4.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 388 NYSIILHGCCQHLDLKAISDLWFDMIHHNIAPDVYNYTSLIYaLC----------RHRNLQDALGVFELMLENGLSPNIV 457
Cdd:pfam17177  13 ELRFQLDKCSKHADATGALALYDAAKAEGVRLAQYHYNVLLY-LCskaadatdlkPQLAADRGFEVFEAMKAQGVSPNEA 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 458 TCTILVDSFSKQGLVGEAFLFLDRMhQSLGIVPNLCMYRVMINGLCKTNKYSGVWNVFADMIKRGYVPDVVLYSIIIEGF 537
Cdd:pfam17177  92 TYTAVARLAAAKGDGDLAFDLVKEM-EAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALLKVS 170

                         170
                  ....*....|....*....
gi 1162457081 538 VKALKLQEALRLYHKMLDE 556
Cdd:pfam17177 171 AKAGRADKVYAYLHRLRDA 189
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 668-701 6.64e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.52  E-value: 6.64e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1162457081 668 VTYTALIIGYLKMGDEKEACMMYESMRHVGIAPD 701
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 528-562 6.90e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.52  E-value: 6.90e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1162457081 528 VLYSIIIEGFVKALKLQEALRLYHKMLDEGVKPNI 562
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 521-553 7.30e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 40.41  E-value: 7.30e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1162457081 521 RGYVPDVVLYSIIIEGFVKALKLQEALRLYHKM 553
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 598-632 8.00e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.13  E-value: 8.00e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1162457081 598 VLYTSIIACYCRRLNMKAAMEWLKEMERSGVLPDA 632
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 177-219 8.16e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.42  E-value: 8.16e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1162457081 177 CNFLLKCLVEGNQIMYARSLFDDMKSCGPSPNVCSYSILMSMY 219
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 415-447 1.11e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 39.64  E-value: 1.11e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1162457081 415 HNIAPDVYNYTSLIYALCRHRNLQDALGVFELM 447
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 244-292 1.12e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.04  E-value: 1.12e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1162457081 244 PNATTYGTYLYGLCRSRQVTSAWDFLQTLSQSGGPCSNYCFNAVIHGFC 292
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 282-311 1.27e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.37  E-value: 1.27e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 1162457081 282 YCFNAVIHGFCCEGQVDKAIEVFHGMKKCG 311
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKG 30
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 598-628 2.03e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.99  E-value: 2.03e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1162457081 598 VLYTSIIACYCRRLNMKAAMEWLKEMERSGV 628
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 495-630 2.92e-04

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 42.77  E-value: 2.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 495 YRVMINGLCKTNKYSGVWNVFADMIKRG-----YVPDVVLY----SIIIEGFVKALKLQEALRLYHKMLDEGVKPNIFTY 565
Cdd:pfam17177  14 LRFQLDKCSKHADATGALALYDAAKAEGvrlaqYHYNVLLYlcskAADATDLKPQLAADRGFEVFEAMKAQGVSPNEATY 93

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1162457081 566 SSLINgLCNDDRLPE-AMGLIRDMIGEDLLLDNVLYTSIIACYCRRLNMKAAMEWLKEMERSGVLP 630
Cdd:pfam17177  94 TAVAR-LAAAKGDGDlAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVEL 158
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 424-452 4.58e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.83  E-value: 4.58e-04
                          10        20
                  ....*....|....*....|....*....
gi 1162457081 424 YTSLIYALCRHRNLQDALGVFELMLENGL 452
Cdd:pfam01535   3 YNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 338-396 6.58e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 38.49  E-value: 6.58e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1162457081 338 MLEEMARNGICPNQVSYSSLLHGLCKTGQVALALKIFKNLQDHGFEHDQINYSIILHGC 396
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 318-347 1.20e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 36.67  E-value: 1.20e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1162457081 318 SYSILVDGLCKQGDLLKGYDMLEEMARNGI 347
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 668-698 1.45e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 36.67  E-value: 1.45e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1162457081 668 VTYTALIIGYLKMGDEKEACMMYESMRHVGI 698
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 352-385 1.79e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.28  E-value: 1.79e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1162457081 352 VSYSSLLHGLCKTGQVALALKIFKNLQDHGFEHD 385
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 195-260 3.00e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 36.57  E-value: 3.00e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1162457081 195 SLFDDMKSCGPSPNVCSYSILMSMYTHGERscLEEAFELLCEMESNGVRPNATTYgTYLYGLCRSR 260
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGN--LKLALEIFERMKKKGIKPTLDTY-NAILGVIGGR 63
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 528-558 3.02e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.52  E-value: 3.02e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1162457081 528 VLYSIIIEGFVKALKLQEALRLYHKMLDEGV 558
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 352-382 4.06e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.13  E-value: 4.06e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1162457081 352 VSYSSLLHGLCKTGQVALALKIFKNLQDHGF 382
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 210-246 5.44e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.12  E-value: 5.44e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1162457081 210 CSYSILMSMYTHGERscLEEAFELLCEMESNGVRPNA 246
Cdd:TIGR00756   1 VTYNTLIDGLCKAGR--VEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 563-593 5.51e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.75  E-value: 5.51e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1162457081 563 FTYSSLINGLCNDDRLPEAMGLIRDMIGEDL 593
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 457-491 5.71e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.12  E-value: 5.71e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1162457081 457 VTCTILVDSFSKQGLVGEAFLFLDRMHQSlGIVPN 491
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKER-GIEPD 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 663-694 5.98e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.01  E-value: 5.98e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1162457081 663 LKPTIVTYTALIIGYLKMGDEKEACMMYESMR 694
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 303-362 6.72e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 35.80  E-value: 6.72e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162457081 303 VFHGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMARNGICPNQVSYSSLLhGLC 362
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL-GVI 60
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 443-500 6.93e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 35.41  E-value: 6.93e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1162457081 443 VFELMLENGLSPNIVTCTILVDSFSKQGLVGEAFLFLDRMHQSlGIVPNLCMYRVMIN 500
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKK-GIKPTLDTYNAILG 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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