|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
2-503 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 681.92 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 2 LDAADFPETPPALTGLPLSFMKRFLALPVEIADDRVVVVMADPMDFSTREIISRTFDRPVLIRRAEAETISQYIYRWFEA 81
Cdd:COG2804 66 VDLDELEIDPEVLELLPEELARRHRVLPLRLEGGTLTVAMADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGS 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 82 EVDMAANEGSAGGELDFEDqlwDSPEHLKDMASEAPIIRLVNHLISRAVSLNASDIHIEPRKSHVQIRYRIDGVLHNMES 161
Cdd:COG2804 146 ESSIEELLEELAEDLTSEE---EDLEDLLEEADDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLR 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 162 INIKLKSAIISRVKLIAKMDIAEMRLPQDGRIRFAGGGHDIDIRVSSIPAFFGESLVLRLLKQDEINLDLDSLGFPDTIR 241
Cdd:COG2804 223 LPKSLAPALVSRIKIMANLDIAERRLPQDGRIKLRLGGREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQL 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 242 RQFEQAIKLPYGMILVTGPTGSGKTTTLYAALNTLNQPDVKIVTVEDPVEYQLDGVNQVQVQSAIGLTFSNLLRSFLRQD 321
Cdd:COG2804 303 ERLRRLIRRPHGIILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQD 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 322 PDIMLVGEIRDVETADIAIQSALTGHMVFSTLHTNDSLGAITRLEDMGVERFMVASAVVAVLAQRLVRRVCPDCSATVEL 401
Cdd:COG2804 383 PDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEP 462
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 402 TDGEREQLALELQIPVSrvlPTYQRGRGCKTCGDTGYRGRIGIYEYLLLDEKVRRAISRGDNlESTLRRSREDGGIPTLR 481
Cdd:COG2804 463 DPEELERLGLPPEELAP---LTFYRGVGCEHCNGTGYKGRTGIYELLVIDDELRELIAEGAS-AAELREAARKEGMRTLR 538
|
490 500
....*....|....*....|..
gi 1162406145 482 DDGIDKVAQGITTYEEILRVTR 503
Cdd:COG2804 539 EDGLEKVLQGITTLEEVLRVTG 560
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
14-502 |
0e+00 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 555.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 14 LTGLPLSFMKRFLALPVEIADDRVVVVMADPMDFSTREIISRTFDRPVLIRRAEAETISQYIYRWFEAEVDMAANE-GSA 92
Cdd:TIGR02533 1 VRRLPIGFAKQSRVLPLSEHDGTLVVAVSDPLDLAALDEVRRLFGAPVQLIIATASEIDDAINSVYARTGSAAAQIvEEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 93 GGELDFEDQLWDSP--EHLKDMASEAPIIRLVNHLISRAVSLNASDIHIEPRKSHVQIRYRIDGVLHNMESINIKLKSAI 170
Cdd:TIGR02533 81 EGEDDLSALELDEPkiEDLLDLEDDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 171 ISRVKLIAKMDIAEMRLPQDGRIRFAGGGHDIDIRVSSIPAFFGESLVLRLLKQDEINLDLDSLGFPDTIRRQFEQAIKL 250
Cdd:TIGR02533 161 VSRVKIMAKLNIAEKRLPQDGRISLRVGGRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 251 PYGMILVTGPTGSGKTTTLYAALNTLNQPDVKIVTVEDPVEYQLDGVNQVQVQSAIGLTFSNLLRSFLRQDPDIMLVGEI 330
Cdd:TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 331 RDVETADIAIQSALTGHMVFSTLHTNDSLGAITRLEDMGVERFMVASAVVAVLAQRLVRRVCPDCSATVELTDGEREQLA 410
Cdd:TIGR02533 321 RDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATPEEIALFG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 411 LELQIPVsrvlpTYQRGRGCKTCGDTGYRGRIGIYEYLLLDEKVRRAISRGDNlESTLRRSREDGGIPTLRDDGIDKVAQ 490
Cdd:TIGR02533 401 ISPEGPI-----NLYRPVGCPHCNHTGYLGRTGIYELLIVDDDLRSLIHSRAD-EGEIKEIARAAGMRTLRDDGLRKVLA 474
|
490
....*....|..
gi 1162406145 491 GITTYEEILRVT 502
Cdd:TIGR02533 475 GITTIEEVLRVT 486
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
111-502 |
1.15e-139 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 410.09 E-value: 1.15e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 111 DMASEAPIIRLVNHLISRAVSLNASDIHIEPRKSHVQIRYRIDGVLHNMESINIKLKSAIISRVKLIAKMDIAEMRLPQD 190
Cdd:PRK10436 77 DQEKDTPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNLDIAERRLPQD 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 191 GRIRFAGGGHDIDIRVSSIPAFFGESLVLRLLKQDEINLDLDSLGFPDTIRRQFEQAIKLPYGMILVTGPTGSGKTTTLY 270
Cdd:PRK10436 157 GQFTVELAGNAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLY 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 271 AALNTLNQPDVKIVTVEDPVEYQLDGVNQVQVQSAIGLTFSNLLRSFLRQDPDIMLVGEIRDVETADIAIQSALTGHMVF 350
Cdd:PRK10436 237 SALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 351 STLHTNDSLGAITRLEDMGVERFMVASAVVAVLAQRLVRRVCPDCsatveltdgeREQLALELQIPVS---RVLPTYQrG 427
Cdd:PRK10436 317 STLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHC----------RQQASEPIHLPPNiwpGPLPHWQ-A 385
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1162406145 428 RGCKTCGdTGYRGRIGIYEYLLLDEKVRRAISRG---DNLESTLRRSredgGIPTLRDDGIDKVAQGITTYEEILRVT 502
Cdd:PRK10436 386 VGCEHCY-HGYYGRTALFEVLPITPVLQQAIASNaspEELETHARQQ----GMTTLFENGLLAVEQGLTTLEELYRVL 458
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
123-390 |
2.94e-115 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 340.80 E-value: 2.94e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 123 NHLISRAVSLNASDIHIEPRKSHVQIRYRIDGVLHNMESINIKLKSAIISRVKLIAKMDIAEMRLPQDGRIRFAGGGHDI 202
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRIGGKGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 203 DIRVSSIPAFFGESLVLRLLKQDEINLDLDSLGFPDTIRRQFEQAIKLPYGMILVTGPTGSGKTTTLYAALNTLNQPDVK 282
Cdd:pfam00437 81 RVRVSTLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDEN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 283 IVTVEDPVEYQLDGVNQVQVQSAIGLTFSNLLRSFLRQDPDIMLVGEIRDVETADIAIQSALTGHMVFSTLHTNDSLGAI 362
Cdd:pfam00437 161 IVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGAL 240
|
250 260
....*....|....*....|....*...
gi 1162406145 363 TRLEDMGVERFMVASAVVAVLAQRLVRR 390
Cdd:pfam00437 241 TRLQDMGVPPFELASSLLLVIAQRLVRK 268
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
123-372 |
1.79e-93 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 284.73 E-value: 1.79e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 123 NHLISRAVSLNASDIHIEPRKSHVQIRYRIDGVLHNMESINIKLKSAIISRVKLIAKMDIAEMRLPQDGRIRFAGGGHDI 202
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 203 DIRVSSIPAFFG-ESLVLRLLKQDEINLDLDslgFPDTIRRQFEQAIKLPYGMILVTGPTGSGKTTTLY--AALNTLNQp 279
Cdd:NF041000 81 SLRLSTVGDFLGrESLVIRLLYQLEQIKPQL---FFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYslARKLALNK- 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 280 dvKIVTVEDPVEYQLDGVNQVQVQSAIGLTFSNLLRSFLRQDPDIMLVGEIRDVETADIAIQSALTGHMVFSTLHTNDSL 359
Cdd:NF041000 157 --QVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAA 234
|
250
....*....|...
gi 1162406145 360 GAITRLEDMGVER 372
Cdd:NF041000 235 GVIYRLLELGISK 247
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
243-391 |
1.67e-83 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 255.10 E-value: 1.67e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 243 QFEQAIKLPYGMILVTGPTGSGKTTTLYAALNTLNQPDVKIVTVEDPVEYQLDGVNQVQVQSAIGLTFSNLLRSFLRQDP 322
Cdd:cd01129 2 RLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQDP 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1162406145 323 DIMLVGEIRDVETADIAIQSALTGHMVFSTLHTNDSLGAITRLEDMGVERFMVASAVVAVLAQRLVRRV 391
Cdd:cd01129 82 DIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGRT 150
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
251-330 |
6.31e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 40.43 E-value: 6.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 251 PYGMILVTGPTGSGKTTTLYAALNTLNQP--DVKIVTVEDPVEYQLDGVNQVQVQSAIGLTFS----NLLRSFLRQ-DPD 323
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPggGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGelrlRLALALARKlKPD 80
|
....*..
gi 1162406145 324 IMLVGEI 330
Cdd:smart00382 81 VLILDEI 87
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
2-503 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 681.92 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 2 LDAADFPETPPALTGLPLSFMKRFLALPVEIADDRVVVVMADPMDFSTREIISRTFDRPVLIRRAEAETISQYIYRWFEA 81
Cdd:COG2804 66 VDLDELEIDPEVLELLPEELARRHRVLPLRLEGGTLTVAMADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGS 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 82 EVDMAANEGSAGGELDFEDqlwDSPEHLKDMASEAPIIRLVNHLISRAVSLNASDIHIEPRKSHVQIRYRIDGVLHNMES 161
Cdd:COG2804 146 ESSIEELLEELAEDLTSEE---EDLEDLLEEADDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLR 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 162 INIKLKSAIISRVKLIAKMDIAEMRLPQDGRIRFAGGGHDIDIRVSSIPAFFGESLVLRLLKQDEINLDLDSLGFPDTIR 241
Cdd:COG2804 223 LPKSLAPALVSRIKIMANLDIAERRLPQDGRIKLRLGGREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQL 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 242 RQFEQAIKLPYGMILVTGPTGSGKTTTLYAALNTLNQPDVKIVTVEDPVEYQLDGVNQVQVQSAIGLTFSNLLRSFLRQD 321
Cdd:COG2804 303 ERLRRLIRRPHGIILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQD 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 322 PDIMLVGEIRDVETADIAIQSALTGHMVFSTLHTNDSLGAITRLEDMGVERFMVASAVVAVLAQRLVRRVCPDCSATVEL 401
Cdd:COG2804 383 PDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEP 462
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 402 TDGEREQLALELQIPVSrvlPTYQRGRGCKTCGDTGYRGRIGIYEYLLLDEKVRRAISRGDNlESTLRRSREDGGIPTLR 481
Cdd:COG2804 463 DPEELERLGLPPEELAP---LTFYRGVGCEHCNGTGYKGRTGIYELLVIDDELRELIAEGAS-AAELREAARKEGMRTLR 538
|
490 500
....*....|....*....|..
gi 1162406145 482 DDGIDKVAQGITTYEEILRVTR 503
Cdd:COG2804 539 EDGLEKVLQGITTLEEVLRVTG 560
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
14-502 |
0e+00 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 555.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 14 LTGLPLSFMKRFLALPVEIADDRVVVVMADPMDFSTREIISRTFDRPVLIRRAEAETISQYIYRWFEAEVDMAANE-GSA 92
Cdd:TIGR02533 1 VRRLPIGFAKQSRVLPLSEHDGTLVVAVSDPLDLAALDEVRRLFGAPVQLIIATASEIDDAINSVYARTGSAAAQIvEEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 93 GGELDFEDQLWDSP--EHLKDMASEAPIIRLVNHLISRAVSLNASDIHIEPRKSHVQIRYRIDGVLHNMESINIKLKSAI 170
Cdd:TIGR02533 81 EGEDDLSALELDEPkiEDLLDLEDDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 171 ISRVKLIAKMDIAEMRLPQDGRIRFAGGGHDIDIRVSSIPAFFGESLVLRLLKQDEINLDLDSLGFPDTIRRQFEQAIKL 250
Cdd:TIGR02533 161 VSRVKIMAKLNIAEKRLPQDGRISLRVGGRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 251 PYGMILVTGPTGSGKTTTLYAALNTLNQPDVKIVTVEDPVEYQLDGVNQVQVQSAIGLTFSNLLRSFLRQDPDIMLVGEI 330
Cdd:TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 331 RDVETADIAIQSALTGHMVFSTLHTNDSLGAITRLEDMGVERFMVASAVVAVLAQRLVRRVCPDCSATVELTDGEREQLA 410
Cdd:TIGR02533 321 RDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATPEEIALFG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 411 LELQIPVsrvlpTYQRGRGCKTCGDTGYRGRIGIYEYLLLDEKVRRAISRGDNlESTLRRSREDGGIPTLRDDGIDKVAQ 490
Cdd:TIGR02533 401 ISPEGPI-----NLYRPVGCPHCNHTGYLGRTGIYELLIVDDDLRSLIHSRAD-EGEIKEIARAAGMRTLRDDGLRKVLA 474
|
490
....*....|..
gi 1162406145 491 GITTYEEILRVT 502
Cdd:TIGR02533 475 GITTIEEVLRVT 486
|
|
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
1-503 |
4.10e-167 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 484.13 E-value: 4.10e-167
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 1 MLDAADFPETPPALTGLPLSFMKRFLALPVEIADDRVVVVMADPMDFSTREIISRTFDRPVLIRRAEAETISQYIYRWFE 80
Cdd:TIGR02538 58 LLDLNAFDPDALPVQLVSEELIQKHQALPLFKRGNTLFVAVSDPTNISALDDIRFATGLNVEVVIVEEDKLSALIEKYYG 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 81 AEVDMAANEG----SAGGELDFEDQLWDSP--EHLKDMASEAPIIRLVNHLISRAVSLNASDIHIEPRKSHVQIRYRIDG 154
Cdd:TIGR02538 138 GSDSLAKELGdediGDLEELDVDAIDDEGPddIEQDAVDDDAPIVKFVNKILLDAIRKGASDIHFEPYEKSYRVRFRIDG 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 155 VLHNMESINIKLKSAIISRVKLIAKMDIAEMRLPQDGRIRFA-GGGHDIDIRVSSIPAFFGESLVLRLLKQDEINLDLDS 233
Cdd:TIGR02538 218 ILHEVAQPPLALANRIAARIKVMSRLDIAEKRIPQDGRIKLKlSKSKAIDFRVSTLPTLFGEKVVLRILDSSAAQLDIDK 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 234 LGFPDTIRRQFEQAIKLPYGMILVTGPTGSGKTTTLYAALNTLNQPDVKIVTVEDPVEYQLDGVNQVQVQSAIGLTFSNL 313
Cdd:TIGR02538 298 LGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 314 LRSFLRQDPDIMLVGEIRDVETADIAIQSALTGHMVFSTLHTNDSLGAITRLEDMGVERFMVASAVVAVLAQRLVRRVCP 393
Cdd:TIGR02538 378 LRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSVNLIMAQRLARRLCS 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 394 DCSATVELTdgerEQLALELQIPVSRvLPTYQ--RGRGCKTCGDTGYRGRIGIYEYLLLDEKVRRAISRGDNLESTLRRS 471
Cdd:TIGR02538 458 HCKAPEEVP----AEALLELGFTQED-LADLKlyGPVGCDECSNTGYKGRVGIYEVMPMSEEIAELILKGGNALQIAELA 532
|
490 500 510
....*....|....*....|....*....|..
gi 1162406145 472 REDgGIPTLRDDGIDKVAQGITTYEEILRVTR 503
Cdd:TIGR02538 533 QKE-GMRTLRRSGLLKVKQGVTSLEEVLRVTV 563
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
111-502 |
1.15e-139 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 410.09 E-value: 1.15e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 111 DMASEAPIIRLVNHLISRAVSLNASDIHIEPRKSHVQIRYRIDGVLHNMESINIKLKSAIISRVKLIAKMDIAEMRLPQD 190
Cdd:PRK10436 77 DQEKDTPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNLDIAERRLPQD 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 191 GRIRFAGGGHDIDIRVSSIPAFFGESLVLRLLKQDEINLDLDSLGFPDTIRRQFEQAIKLPYGMILVTGPTGSGKTTTLY 270
Cdd:PRK10436 157 GQFTVELAGNAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLY 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 271 AALNTLNQPDVKIVTVEDPVEYQLDGVNQVQVQSAIGLTFSNLLRSFLRQDPDIMLVGEIRDVETADIAIQSALTGHMVF 350
Cdd:PRK10436 237 SALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 351 STLHTNDSLGAITRLEDMGVERFMVASAVVAVLAQRLVRRVCPDCsatveltdgeREQLALELQIPVS---RVLPTYQrG 427
Cdd:PRK10436 317 STLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHC----------RQQASEPIHLPPNiwpGPLPHWQ-A 385
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1162406145 428 RGCKTCGdTGYRGRIGIYEYLLLDEKVRRAISRG---DNLESTLRRSredgGIPTLRDDGIDKVAQGITTYEEILRVT 502
Cdd:PRK10436 386 VGCEHCY-HGYYGRTALFEVLPITPVLQQAIASNaspEELETHARQQ----GMTTLFENGLLAVEQGLTTLEELYRVL 458
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
123-390 |
2.94e-115 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 340.80 E-value: 2.94e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 123 NHLISRAVSLNASDIHIEPRKSHVQIRYRIDGVLHNMESINIKLKSAIISRVKLIAKMDIAEMRLPQDGRIRFAGGGHDI 202
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRIGGKGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 203 DIRVSSIPAFFGESLVLRLLKQDEINLDLDSLGFPDTIRRQFEQAIKLPYGMILVTGPTGSGKTTTLYAALNTLNQPDVK 282
Cdd:pfam00437 81 RVRVSTLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDEN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 283 IVTVEDPVEYQLDGVNQVQVQSAIGLTFSNLLRSFLRQDPDIMLVGEIRDVETADIAIQSALTGHMVFSTLHTNDSLGAI 362
Cdd:pfam00437 161 IVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGAL 240
|
250 260
....*....|....*....|....*...
gi 1162406145 363 TRLEDMGVERFMVASAVVAVLAQRLVRR 390
Cdd:pfam00437 241 TRLQDMGVPPFELASSLLLVIAQRLVRK 268
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
123-372 |
1.79e-93 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 284.73 E-value: 1.79e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 123 NHLISRAVSLNASDIHIEPRKSHVQIRYRIDGVLHNMESINIKLKSAIISRVKLIAKMDIAEMRLPQDGRIRFAGGGHDI 202
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 203 DIRVSSIPAFFG-ESLVLRLLKQDEINLDLDslgFPDTIRRQFEQAIKLPYGMILVTGPTGSGKTTTLY--AALNTLNQp 279
Cdd:NF041000 81 SLRLSTVGDFLGrESLVIRLLYQLEQIKPQL---FFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYslARKLALNK- 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 280 dvKIVTVEDPVEYQLDGVNQVQVQSAIGLTFSNLLRSFLRQDPDIMLVGEIRDVETADIAIQSALTGHMVFSTLHTNDSL 359
Cdd:NF041000 157 --QVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAA 234
|
250
....*....|...
gi 1162406145 360 GAITRLEDMGVER 372
Cdd:NF041000 235 GVIYRLLELGISK 247
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
243-391 |
1.67e-83 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 255.10 E-value: 1.67e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 243 QFEQAIKLPYGMILVTGPTGSGKTTTLYAALNTLNQPDVKIVTVEDPVEYQLDGVNQVQVQSAIGLTFSNLLRSFLRQDP 322
Cdd:cd01129 2 RLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQDP 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1162406145 323 DIMLVGEIRDVETADIAIQSALTGHMVFSTLHTNDSLGAITRLEDMGVERFMVASAVVAVLAQRLVRRV 391
Cdd:cd01129 82 DIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGRT 150
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
122-500 |
8.47e-66 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 216.11 E-value: 8.47e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 122 VNHLISRAVSLNASDIHIeprKSHVQIRYRIDGVLhnmesinIKLKSAIISRVKLiakMDIAEMRLPQDGRIRFAGGGhD 201
Cdd:COG2805 5 LDELLKLAVEQGASDLHL---TVGSPPMLRIDGEL-------VPLDDPPLTPEDL---EALLKEILTEEQRERLEEEG-E 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 202 ID----------IRVSsipAFF---GESLVLRLLKqDEInLDLDSLGFPDTIRRqfeqAIKLPYGMILVTGPTGSGKTTT 268
Cdd:COG2805 71 LDfsyslpglgrFRVN---IFRqrgGVAAVLRLIP-SEI-PTLEELGLPPVLKE----LAELPRGLVLVTGPTGSGKSTT 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 269 LYAALNTLNQ-PDVKIVTVEDPVEYQLDGVNQVQVQSAIG---LTFSNLLRSFLRQDPDIMLVGEIRDVETADIAIQSAL 344
Cdd:COG2805 142 LAAMIDYINEtRAKHIITIEDPIEFVHKHKKSLINQREVGrdtPSFANALRAALREDPDVILVGEMRDLETIEAALTAAE 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 345 TGHMVFSTLHTNDSLGAITRLEDM--GVERFMVasavvavlaqrlvrrvcpdcsatveltdgeREQLALELQIPVS-RVL 421
Cdd:COG2805 222 TGHLVFATLHTNSAAQTIDRIIDVfpPEEQAQI------------------------------RSQLAESLRGVISqRLL 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 422 PTyqrgrgcktcgdTGYRGRIGIYEYLLLDEKVRRAISRGD--NLESTLRRSREDGGIpTLRDDGIDKVAQGITTYEEIL 499
Cdd:COG2805 272 PR------------ADGGGRVAAREILVNTPAVRNLIREGKthQIPSLIQTGKKLGMQ-TMDQSLAELVKEGLITEETAL 338
|
.
gi 1162406145 500 R 500
Cdd:COG2805 339 A 339
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
125-416 |
4.98e-48 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 169.04 E-value: 4.98e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 125 LISRAVSLNASDIHIeprKSHVQIRYRIDGVlhnMESINIKLKSAIISRVKLIAKMDIAEMR-LPQDGRIRFAGGGHD-I 202
Cdd:TIGR01420 5 ILREAVKLGASDIHL---TAGAPPAMRIDGD---LVRIEFEPLTPEDTQKLAREILSEKQREeFEENGELDFSFSLPGvG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 203 DIRVSSIPAFFGESLVLRLLKQDEINLDldSLGFPDTirrqFEQAIKLPYGMILVTGPTGSGKTTTLYAALNTLNQ-PDV 281
Cdd:TIGR01420 79 RFRVNAFYQRGGVALVLRLIPSKIPTFE--ELGLPPV----LRELAERPRGLILVTGPTGSGKSTTLASMIDYINKnKAY 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 282 KIVTVEDPVEYQLDGVNQVQVQSAIG---LTFSNLLRSFLRQDPDIMLVGEIRDVETADIAIQSALTGHMVFSTLHTNDS 358
Cdd:TIGR01420 153 HIITIEDPIEYVHTNKRSLINQREVGedtLSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLHTNSA 232
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1162406145 359 LGAITRLEDMGVE------RFMVASAVVAVLAQRLVRRvcpdcsatvelTDGEREQLALELQIP 416
Cdd:TIGR01420 233 AQTIERIIDVFPAeeqeqiRTQLAESLVAIISQRLLPK-----------ADGGGRVLAVEILIN 285
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
229-475 |
6.55e-47 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 162.32 E-value: 6.55e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 229 LDLDSLGFPDTIrrqfEQAIKLPYGMILVTGPTGSGKTTTLYAALNTLNQP-DVKIVTVEDPVEY----QLDGVNQVQVq 303
Cdd:cd01131 2 PTFEELGLPPVL----KDLALKPRGLVLVTGPTGSGKSTTLAAMIDYINETrSKHIITIEDPIEFvhkhKKSLINQREV- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 304 saiGL---TFSNLLRSFLRQDPDIMLVGEIRDVETADIAIQSALTGHMVFSTLHTNDSLGAITRLEDMgverfmvasavV 380
Cdd:cd01131 77 ---GRdteSFAAALRAALREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDV-----------F 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 381 AVLAQRLVrrvcpdcsatveltdgeREQLALELQIPVS-RVLPTYQRGrgcktcgdtgyrGRIGIYEYLLLDEKVRRAIS 459
Cdd:cd01131 143 PPEQQEQV-----------------RIQLASSLRGVISqRLLPKKDGG------------GRVAAFEILINTPAIRNLIR 193
|
250
....*....|....*...
gi 1162406145 460 RG--DNLESTLRRSREDG 475
Cdd:cd01131 194 EGktHQIPSLIQTGARDG 211
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
244-369 |
5.98e-32 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 120.58 E-value: 5.98e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 244 FEQAIKLPyGMILVTGPTGSGKTTTLYAALNTLNQPDvKIVTVEDPVEYQL---DGVNQVQVQSAIglTFSNLLRSFLRQ 320
Cdd:cd19477 3 IKDGIAIG-KNVIVCGGTGSGKTTYIKSILEFIPKEE-RIISIEDTEEIVFkhhKNYTQLFFGGNI--TSADCLKSCLRQ 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1162406145 321 DPDIMLVGEIRDvETADIAIQSALTGH-MVFSTLHTNDSLGAITRLEDMG 369
Cdd:cd19477 79 RPDRIILGELRS-SEAYDFYNVLCSGHkGTLTTLHAGSSEEAFIRLAN*S 127
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
253-372 |
2.76e-31 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 119.02 E-value: 2.76e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 253 GMILVTGPTGSGKTTTLYAALNTL---NQPDVKIVTVEDPVEYQLDGVNQ---VQVQSAIGLTFSNL---LRSFLRQDPD 323
Cdd:cd19516 12 GLVYVAGATGSGKSTLLAAIYRYIlenDPPDRKIITYEDPIEFVYDGIKSkhsIIVQSQIPRHFKSFakaVREALRRKPS 91
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1162406145 324 IMLVGEIRDVETADIAIQSALTGHMVFSTLHTNDSLGAITRLEDM--GVER 372
Cdd:cd19516 92 LIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISLfpPEER 142
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
129-364 |
2.95e-27 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 112.50 E-value: 2.95e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 129 AVSLNASDIHIeprKSHVQIRYRIDGVLHNMEsiNIKLKSAiisRVKLIAK--MD---IAE--------MRLPQDGRIRF 195
Cdd:COG5008 10 MVEKKASDLFI---TAGAPPSIKIDGKLTPLS--QQPLTPE---QVRELAYsiMNeeqREEfertkecnFAISLPGVGRF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 196 aggghdidiRVSsipAFF--GE-SLVLRLLKQDeInLDLDSLGFPDTIRrqfeQAIKLPYGMILVTGPTGSGKTTTLyAA 272
Cdd:COG5008 82 ---------RVN---AFRqrGSvGMVLRRIETE-I-PTLDELGLPPVLK----DLIMEKRGLVLFVGATGSGKSTTL-AA 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 273 L----NTlNQPDvKIVTVEDPVEY--QLDG--VNQVQVqsaiGL---TFSNLLRSFLRQDPDIMLVGEIRDVETADIAIQ 341
Cdd:COG5008 143 MidhrNE-NSSG-HILTIEDPIEFvhKHKKsiVTQREV----GVdteSYEVALKNALRQAPDVILIGEIRDRETMEHAIA 216
|
250 260
....*....|....*....|...
gi 1162406145 342 SALTGHMVFSTLHTNDSLGAITR 364
Cdd:COG5008 217 FAETGHLCLATLHANNANQALDR 239
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
253-368 |
1.27e-23 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 102.19 E-value: 1.27e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 253 GMILVTGPTGSGKTTTLYAALNTL--NQPDVKIVTVEDPVEYQLDGVNQV--QVQSAIGL---TFSNLLRSFLRQDPDIM 325
Cdd:TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCgeTYPDRKIVTYEDPIEYILGSPDDLlpPAQSQIGRdvdSFANGIRLALRRAPKII 229
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1162406145 326 LVGEIRDVETADIAIQSALTGHMVFSTLHTNDSLGAITRLEDM 368
Cdd:TIGR02525 230 GVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISRCLQM 272
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
255-371 |
2.03e-23 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 96.84 E-value: 2.03e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 255 ILVTGPTGSGKTTTLYAALNTLNqPDVKIVTVEDPVEYQLDGVNQVQ------VQSAIGLTFSNLLRSFLRQDPDIMLVG 328
Cdd:cd01130 15 ILISGGTGSGKTTLLNALLSFIP-PDERIVTIEDTRELQLPHPNVVHlltrpgGGEKGEVTMADLLKAALRMRPDRIIVG 93
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1162406145 329 EIRDVETADiAIQSALTGHM-VFSTLHTNDSLGAITRLEDMGVE 371
Cdd:cd01130 94 EVRGGEAYD-MLQAMNTGHPgSITTIHANSAEDAIDRLATLVLE 136
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
252-374 |
1.46e-21 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 97.07 E-value: 1.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 252 YGM-ILVTGPTGSGKTTTLYAALNTLNqPDVKIVTVEDPVEYQLDGVNQVQV---------QSAIGLTfsNLLRSFLRQD 321
Cdd:COG0630 289 NGKsVLVAGGTASGKTTLLNALLSFIP-PDAKIVTIEDTRELNLPHENWISLvtresfggeEGDVTMF--DLLKAALRQR 365
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1162406145 322 PDIMLVGEIRDVEtADIAIQSALTGHMVFSTLHTNDSLGAITRL--EDMGVERFM 374
Cdd:COG0630 366 PDYIVVGEVRGEE-AYTLFQAMATGHGVLSTFHADSVESAINRLtsPPINVPRTL 419
|
|
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
216-369 |
2.71e-18 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 86.76 E-value: 2.71e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 216 SLVLRLLKQDEINL-DLDSLG-FPDTIRRQFEQAIKLPYGmILVTGPTGSGKTTTLyAALNTLNQPDVKIVTVEDPVEYQ 293
Cdd:COG4962 145 SLSIRKFRKRPLTLeDLVALGsLTPEMAEFLRAAVRARLN-ILVSGGTGSGKTTLL-NALSGFIPPDERIVTIEDAAELQ 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 294 LDGVNQVQVQS---------AIGLtfSNLLRSFLRQDPDIMLVGEIRDVETADIaIQSALTGH---MvfSTLHTNDSLGA 361
Cdd:COG4962 223 LQHPHVVRLETrppnvegagEVTL--RDLVRNALRMRPDRIIVGEVRGAEALDM-LQAMNTGHdgsM--STLHANSARDA 297
|
....*...
gi 1162406145 362 ITRLEDMG 369
Cdd:COG4962 298 LARLETLA 305
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
255-365 |
1.49e-15 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 77.47 E-value: 1.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 255 ILVTGPTGSGKTTTLYAALNTL--NQPDVKIVTVEDPVEYQLDGVNQVQVQSAIGLTFSNLLRSFLRQDPDIMLVGEIRD 332
Cdd:PRK13894 151 ILVIGGTGSGKTTLVNAIINEMviQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEVRG 230
|
90 100 110
....*....|....*....|....*....|....
gi 1162406145 333 VETADIaIQSALTGHM-VFSTLHTNDSLGAITRL 365
Cdd:PRK13894 231 PEALDL-LMAWNTGHEgGAATLHANNAKAGLDRL 263
|
|
| VirB11 |
TIGR02788 |
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of ... |
255-368 |
7.81e-13 |
|
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Pssm-ID: 274301 Cd Length: 308 Bit Score: 69.30 E-value: 7.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 255 ILVTGPTGSGKTTTLYAALNTLnqP-DVKIVTVEDPVEYQLDGVNQVQ------VQSAIGLTFSNLLRSFLRQDPDIMLV 327
Cdd:TIGR02788 147 IIISGGTGSGKTTFLKSLVDEI--PkDERIITIEDTREIFLPHPNYVHlfyskgGQGLAKVTPKDLLQSCLRMRPDRIIL 224
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1162406145 328 GEIRDVETADIaIQSALTGHM-VFSTLHTNDSLGAITRLEDM 368
Cdd:TIGR02788 225 GELRGDEAFDF-IRAVNTGHPgSITTLHAGSPEEAFEQLALM 265
|
|
| T2SSE_N |
pfam05157 |
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the ... |
2-82 |
4.44e-12 |
|
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the N-terminus of members of the Type II secretion system protein E. Proteins in this subfamily are typically involved in Type 4 pilus biogenesis, though some are involved in other processes; for instance aggregation in Myxococcus xanthus. The structure of this domain is now known.
Pssm-ID: 428339 [Multi-domain] Cd Length: 108 Bit Score: 62.74 E-value: 4.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 2 LDAADFPETPPALTGLPLSFMKRFLALPVEIADDRVVVVMADPMDFSTREIISRTFDRPVLIRRAEAETISQYIYRWFEA 81
Cdd:pfam05157 25 VDLEALEIDPELLRLLPREFARRHRVLPLREDGGTLVVAVADPLDLALLDELRFLTGKRVEPVLATPSDIRRALERLYGS 104
|
.
gi 1162406145 82 E 82
Cdd:pfam05157 105 E 105
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
255-371 |
4.77e-11 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 64.05 E-value: 4.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 255 ILVTGPTGSGKTTTLYAALNTL--NQPDVKIVTVEDPVEYQLDGVNQVQVQSAIGLTFSNLLRSFLRQDPDIMLVGEIRD 332
Cdd:PRK13833 147 IVISGGTGSGKTTLANAVIAEIvaSAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEVRD 226
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1162406145 333 vETADIAIQSALTGHM-VFSTLHTNDSLGAITRLEDMGVE 371
Cdd:PRK13833 227 -GAALTLLKAWNTGHPgGVTTIHSNTAMSALRRLEQLTAE 265
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
255-365 |
4.23e-08 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 54.90 E-value: 4.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 255 ILVTGPTGSGKTT---TLYAALntlnQPDVKIVTVEDPVEYQLDGVNQVQV---QSAIGL---TFSNLLRSFLRQDPDIM 325
Cdd:PRK13851 165 MLLCGPTGSGKTTmskTLISAI----PPQERLITIEDTLELVIPHENHVRLlysKNGAGLgavTAEHLLQASLRMRPDRI 240
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1162406145 326 LVGEIRDvETADIAIQSALTGHM-VFSTLHTNDSLGAITRL 365
Cdd:PRK13851 241 LLGEMRD-DAAWAYLSEVVSGHPgSISTIHGANPVQGFKKL 280
|
|
| PRK13900 |
PRK13900 |
type IV secretion system ATPase VirB11; Provisional |
223-368 |
4.92e-07 |
|
type IV secretion system ATPase VirB11; Provisional
Pssm-ID: 184381 Cd Length: 332 Bit Score: 51.68 E-value: 4.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 223 KQDEINLDLDSLGFPDTIRRQFEQAIKLPYGmILVTGPTGSGKTTTLYAALNTLNQpDVKIVTVEDPVEYQL-DGVNQVQ 301
Cdd:PRK13900 132 LVDEDDVILNELLAEKKIKEFLEHAVISKKN-IIISGGTSTGKTTFTNAALREIPA-IERLITVEDAREIVLsNHPNRVH 209
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1162406145 302 VQSAIG------LTFSNLLRSFLRQDPDIMLVGEIRDVEtADIAIQSALTGHM-VFSTLHTNDSLGAITRLEDM 368
Cdd:PRK13900 210 LLASKGgqgrakVTTQDLIEACLRLRPDRIIVGELRGAE-AFSFLRAINTGHPgSISTLHADSPAMAIEQLKLM 282
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
253-289 |
6.00e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 40.02 E-value: 6.00e-04
10 20 30
....*....|....*....|....*....|....*..
gi 1162406145 253 GMILVTGPTGSGKTTTLYAALNTLNQPDVKIVTVEDP 289
Cdd:pfam13401 6 GILVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDLP 42
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
251-330 |
6.31e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 40.43 E-value: 6.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 251 PYGMILVTGPTGSGKTTTLYAALNTLNQP--DVKIVTVEDPVEYQLDGVNQVQVQSAIGLTFS----NLLRSFLRQ-DPD 323
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPggGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGelrlRLALALARKlKPD 80
|
....*..
gi 1162406145 324 IMLVGEI 330
Cdd:smart00382 81 VLILDEI 87
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
245-289 |
9.67e-04 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 40.93 E-value: 9.67e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1162406145 245 EQAIKLPYGMILVTGPTGSGKTTTLYAALNTLNqPDVKIVTVEDP 289
Cdd:COG3267 36 EYALAQGGGFVVLTGEVGTGKTTLLRRLLERLP-DDVKVAYIPNP 79
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
238-330 |
6.45e-03 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 37.51 E-value: 6.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162406145 238 DTIRRQFEQAIKLPYGM-ILVTGPTGSGKTTTLYAALNTLNQPDVKIVTVEDPVEYQLDgvnqvQVQSAIGLTFSNLLRS 316
Cdd:cd00009 4 EEAIEALREALELPPPKnLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGL-----VVAELFGHFLVRLLFE 78
|
90
....*....|....*
gi 1162406145 317 FLRQ-DPDIMLVGEI 330
Cdd:cd00009 79 LAEKaKPGVLFIDEI 93
|
|
| |
