MAG: phosphohydrolase [Desulfobacca sp. 4484_104]
HD domain-containing protein( domain architecture ID 10487852)
HD domain-containing protein may function as a metal dependent phosphohydrolase
List of domain hits
Name | Accession | Description | Interval | E-value | |||
RnaY | COG1418 | HD superfamily phosphodieaserase, includes HD domain of RNase Y [Translation, ribosomal ... |
99-202 | 6.69e-20 | |||
HD superfamily phosphodieaserase, includes HD domain of RNase Y [Translation, ribosomal structure and biogenesis, General function prediction only]; : Pssm-ID: 441028 [Multi-domain] Cd Length: 191 Bit Score: 84.18 E-value: 6.69e-20
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RPC10 | COG1996 | DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ... |
20-50 | 3.83e-04 | |||
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase : Pssm-ID: 441599 Cd Length: 48 Bit Score: 37.37 E-value: 3.83e-04
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Name | Accession | Description | Interval | E-value | |||
RnaY | COG1418 | HD superfamily phosphodieaserase, includes HD domain of RNase Y [Translation, ribosomal ... |
99-202 | 6.69e-20 | |||
HD superfamily phosphodieaserase, includes HD domain of RNase Y [Translation, ribosomal structure and biogenesis, General function prediction only]; Pssm-ID: 441028 [Multi-domain] Cd Length: 191 Bit Score: 84.18 E-value: 6.69e-20
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HD | pfam01966 | HD domain; HD domains are metal dependent phosphohydrolases. |
99-183 | 2.68e-10 | |||
HD domain; HD domains are metal dependent phosphohydrolases. Pssm-ID: 460398 [Multi-domain] Cd Length: 110 Bit Score: 56.09 E-value: 2.68e-10
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HDc | smart00471 | Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic ... |
99-205 | 4.28e-10 | |||
Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit). Pssm-ID: 214679 [Multi-domain] Cd Length: 124 Bit Score: 55.77 E-value: 4.28e-10
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HDc | cd00077 | Metal dependent phosphohydrolases with conserved 'HD' motif |
99-219 | 3.27e-09 | |||
Metal dependent phosphohydrolases with conserved 'HD' motif Pssm-ID: 238032 [Multi-domain] Cd Length: 145 Bit Score: 53.88 E-value: 3.27e-09
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HDIG | TIGR00277 | HDIG domain; This domain is found in a few known nucleotidyltransferes and in a large number ... |
100-184 | 1.40e-06 | |||
HDIG domain; This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG. This model may annotate homologous domains in which one or more of the His residues is conserved but misaligned, and some probable false-positive hits. Pssm-ID: 272994 [Multi-domain] Cd Length: 80 Bit Score: 45.02 E-value: 1.40e-06
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PRK10119 | PRK10119 | putative hydrolase; Provisional |
100-200 | 7.42e-05 | |||
putative hydrolase; Provisional Pssm-ID: 182251 Cd Length: 231 Bit Score: 42.80 E-value: 7.42e-05
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RPC10 | COG1996 | DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ... |
20-50 | 3.83e-04 | |||
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase Pssm-ID: 441599 Cd Length: 48 Bit Score: 37.37 E-value: 3.83e-04
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Name | Accession | Description | Interval | E-value | |||
RnaY | COG1418 | HD superfamily phosphodieaserase, includes HD domain of RNase Y [Translation, ribosomal ... |
99-202 | 6.69e-20 | |||
HD superfamily phosphodieaserase, includes HD domain of RNase Y [Translation, ribosomal structure and biogenesis, General function prediction only]; Pssm-ID: 441028 [Multi-domain] Cd Length: 191 Bit Score: 84.18 E-value: 6.69e-20
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HD | pfam01966 | HD domain; HD domains are metal dependent phosphohydrolases. |
99-183 | 2.68e-10 | |||
HD domain; HD domains are metal dependent phosphohydrolases. Pssm-ID: 460398 [Multi-domain] Cd Length: 110 Bit Score: 56.09 E-value: 2.68e-10
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HDc | smart00471 | Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic ... |
99-205 | 4.28e-10 | |||
Metal dependent phosphohydrolases with conserved 'HD' motif; Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit). Pssm-ID: 214679 [Multi-domain] Cd Length: 124 Bit Score: 55.77 E-value: 4.28e-10
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HDc | cd00077 | Metal dependent phosphohydrolases with conserved 'HD' motif |
99-219 | 3.27e-09 | |||
Metal dependent phosphohydrolases with conserved 'HD' motif Pssm-ID: 238032 [Multi-domain] Cd Length: 145 Bit Score: 53.88 E-value: 3.27e-09
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HDGYP | COG2206 | HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant) [Signal ... |
72-183 | 9.07e-08 | |||
HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant) [Signal transduction mechanisms]; Pssm-ID: 441808 [Multi-domain] Cd Length: 316 Bit Score: 51.90 E-value: 9.07e-08
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HDIG | TIGR00277 | HDIG domain; This domain is found in a few known nucleotidyltransferes and in a large number ... |
100-184 | 1.40e-06 | |||
HDIG domain; This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG. This model may annotate homologous domains in which one or more of the His residues is conserved but misaligned, and some probable false-positive hits. Pssm-ID: 272994 [Multi-domain] Cd Length: 80 Bit Score: 45.02 E-value: 1.40e-06
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HDOD | pfam08668 | HDOD domain; |
96-185 | 9.56e-06 | |||
HDOD domain; Pssm-ID: 430141 [Multi-domain] Cd Length: 196 Bit Score: 44.91 E-value: 9.56e-06
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HDOD | COG1639 | HD-like signal output (HDOD) domain, no enzymatic activity [Signal transduction mechanisms]; |
85-207 | 3.24e-05 | |||
HD-like signal output (HDOD) domain, no enzymatic activity [Signal transduction mechanisms]; Pssm-ID: 441246 [Multi-domain] Cd Length: 244 Bit Score: 43.80 E-value: 3.24e-05
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PRK10119 | PRK10119 | putative hydrolase; Provisional |
100-200 | 7.42e-05 | |||
putative hydrolase; Provisional Pssm-ID: 182251 Cd Length: 231 Bit Score: 42.80 E-value: 7.42e-05
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RPC10 | COG1996 | DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ... |
20-50 | 3.83e-04 | |||
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase Pssm-ID: 441599 Cd Length: 48 Bit Score: 37.37 E-value: 3.83e-04
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COG3294 | COG3294 | Metal-dependent phosphatase/phosphodiesterase, HD supefamily [General function prediction only] ... |
102-187 | 1.12e-03 | |||
Metal-dependent phosphatase/phosphodiesterase, HD supefamily [General function prediction only]; Pssm-ID: 442523 Cd Length: 259 Bit Score: 39.12 E-value: 1.12e-03
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Cas3''_I | cd09641 | CRISPR/Cas system-associated protein Cas3''; CRISPR (Clustered Regularly Interspaced Short ... |
101-217 | 1.55e-03 | |||
CRISPR/Cas system-associated protein Cas3''; CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; HD-like nuclease, specifically digesting double-stranded oligonucleotides and preferably cleaving at G:C pairs; signature gene for Type I Pssm-ID: 193608 [Multi-domain] Cd Length: 200 Bit Score: 38.41 E-value: 1.55e-03
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nadD | PRK07152 | nicotinate-nucleotide adenylyltransferase; |
96-149 | 2.51e-03 | |||
nicotinate-nucleotide adenylyltransferase; Pssm-ID: 235947 [Multi-domain] Cd Length: 342 Bit Score: 38.39 E-value: 2.51e-03
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PRK03381 | PRK03381 | PII uridylyl-transferase; Provisional |
102-182 | 3.51e-03 | |||
PII uridylyl-transferase; Provisional Pssm-ID: 235123 [Multi-domain] Cd Length: 774 Bit Score: 38.43 E-value: 3.51e-03
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cas3_HD | TIGR01596 | CRISPR-associated endonuclease Cas3-HD; CRISPR/Cas systems are widespread, mobile systems for ... |
97-244 | 7.88e-03 | |||
CRISPR-associated endonuclease Cas3-HD; CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein. Pssm-ID: 273711 [Multi-domain] Cd Length: 176 Bit Score: 36.03 E-value: 7.88e-03
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Blast search parameters | ||||
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