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Conserved domains on  [gi|1160555209|ref|XP_020437546|]
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hypothetical protein PPL_02442 [Heterostelium album PN500]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CBM_2 super family cl21579
Cellulose binding domain; Two tryptophan residues are involved in cellulose binding. Cellulose ...
 1105-1185 9.35e-06

Cellulose binding domain; Two tryptophan residues are involved in cellulose binding. Cellulose binding domain found in bacteria.


The actual alignment was detected with superfamily member smart01063:

Pssm-ID: 451319 [Multi-domain]  Cd Length: 84  Bit Score: 44.96  E-value: 9.35e-06
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160555209  1105 VSQTKEDTWQNaDGTYSTQVTFLLCNTGQLPITSFQF--DVIGEPLKNYYDFVLVSGNTYTIQSYLLPIKPGECRTLGYI 1182
Cdd:smart01063    2 ITQTITSSWVD-NNVTYTQYDVTITNNGNKPIKSITIgtDNNLRDSGSIWNVERLSNGSLTLPSYQNSIAPGSSYTFGYI 80


                    ...
gi 1160555209  1183 TNG 1185
Cdd:smart01063   81 IKG 83
 
Name Accession Description Interval E-value
CBM49 smart01063
Carbohydrate binding domain CBM49; This domain is found at the C terminal of cellulases and in ...
 1105-1185 9.35e-06

Carbohydrate binding domain CBM49; This domain is found at the C terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose.


Pssm-ID: 215005 [Multi-domain]  Cd Length: 84  Bit Score: 44.96  E-value: 9.35e-06
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160555209  1105 VSQTKEDTWQNaDGTYSTQVTFLLCNTGQLPITSFQF--DVIGEPLKNYYDFVLVSGNTYTIQSYLLPIKPGECRTLGYI 1182
Cdd:smart01063    2 ITQTITSSWVD-NNVTYTQYDVTITNNGNKPIKSITIgtDNNLRDSGSIWNVERLSNGSLTLPSYQNSIAPGSSYTFGYI 80


                    ...
gi 1160555209  1183 TNG 1185
Cdd:smart01063   81 IKG 83
CBM49 pfam09478
Carbohydrate binding domain CBM49; This domain is found at the C terminal of cellulases and in ...
 1105-1182 7.56e-05

Carbohydrate binding domain CBM49; This domain is found at the C terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose.


Pssm-ID: 286553  Cd Length: 80  Bit Score: 42.30  E-value: 7.56e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1160555209 1105 VSQTKEDTWqNADGTYSTQVTFLLCNTGQLPITSFQFdVIGEPLKNYYDFVLVSGNTYTIQSYLLPIKPGECRTLGYI 1182
Cdd:pfam09478    3 ISQTITSSW-IDNGVTYYQYSVTITNNGSKTIKSLTI-SIDNLYGPIWGVEKVSGNTYSFPSWLPSLPPGASFSFGYI 78
 
Name Accession Description Interval E-value
CBM49 smart01063
Carbohydrate binding domain CBM49; This domain is found at the C terminal of cellulases and in ...
 1105-1185 9.35e-06

Carbohydrate binding domain CBM49; This domain is found at the C terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose.


Pssm-ID: 215005 [Multi-domain]  Cd Length: 84  Bit Score: 44.96  E-value: 9.35e-06
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1160555209  1105 VSQTKEDTWQNaDGTYSTQVTFLLCNTGQLPITSFQF--DVIGEPLKNYYDFVLVSGNTYTIQSYLLPIKPGECRTLGYI 1182
Cdd:smart01063    2 ITQTITSSWVD-NNVTYTQYDVTITNNGNKPIKSITIgtDNNLRDSGSIWNVERLSNGSLTLPSYQNSIAPGSSYTFGYI 80


                    ...
gi 1160555209  1183 TNG 1185
Cdd:smart01063   81 IKG 83
CBM49 pfam09478
Carbohydrate binding domain CBM49; This domain is found at the C terminal of cellulases and in ...
 1105-1182 7.56e-05

Carbohydrate binding domain CBM49; This domain is found at the C terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose.


Pssm-ID: 286553  Cd Length: 80  Bit Score: 42.30  E-value: 7.56e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1160555209 1105 VSQTKEDTWqNADGTYSTQVTFLLCNTGQLPITSFQFdVIGEPLKNYYDFVLVSGNTYTIQSYLLPIKPGECRTLGYI 1182
Cdd:pfam09478    3 ISQTITSSW-IDNGVTYYQYSVTITNNGSKTIKSLTI-SIDNLYGPIWGVEKVSGNTYSFPSWLPSLPPGASFSFGYI 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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