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Conserved domains on  [gi|115494889|ref|YP_778670|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Rusa unicolor swinhoei]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 6.36e-179

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 499.37  E-value: 6.36e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   1 MNPIIFILILSTMMMGTIMVMISSHWLLVWIGFEMNMLAIIPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMF 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  81 SGQWTVMKLFNPVASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQIFPSINLDMILTISIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 161 SIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYIIMTSTMFTLFMANSTTTTLSLSHTWNKMPVM 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 241 TILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRLTYSTALTMFPSTNNMKMKWQFSTT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*..
gi 115494889 321 KQMTLLPTMVVLSTMLLPLTPILSVLE 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 6.36e-179

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 499.37  E-value: 6.36e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   1 MNPIIFILILSTMMMGTIMVMISSHWLLVWIGFEMNMLAIIPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMF 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  81 SGQWTVMKLFNPVASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQIFPSINLDMILTISIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 161 SIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYIIMTSTMFTLFMANSTTTTLSLSHTWNKMPVM 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 241 TILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRLTYSTALTMFPSTNNMKMKWQFSTT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*..
gi 115494889 321 KQMTLLPTMVVLSTMLLPLTPILSVLE 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 6-296 2.62e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 120.22  E-value: 2.62e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   6 FILILSTMMMGTIMVMISSHWLLVWIGFEMNMLAI-IPIMMKKHNPRATEAATKYLLTQSTAS--MLLMMAVI------- 75
Cdd:COG1007  104 FYALLLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSgfLLYGISLLygatgsl 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  76 ----INLMFSGQWTVMKLFnPVASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQI----FP 147
Cdd:COG1007  184 nlagIAAALAAGGANSPLL-LLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveaFP 262

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 148 SINLD---MILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWM-TAVLPYNPTM---MLLNLIIYIIMTSTMFTLFM 220
Cdd:COG1007  263 GLAADwqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLGvsaALFYLLAYLFMNLGAFAVIL 342

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 221 ANSTTTTLSLSH-----TWNKMPVMTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMR 295
Cdd:COG1007  343 LLSRKGGEAEEIedlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422


                 .
gi 115494889 296 L 296
Cdd:COG1007  423 V 423
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-286 2.17e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.24  E-value: 2.17e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   23 SSHWLLVWIGFEMNMLAIIPIM-MKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMFSGQWTVMKLFNPVASM----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   97 ------FMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILL-TWQKMAP-----MSVLYQIFPSINLDMILTISILSIMI 164
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  165 GGWGGLNQTQLRKIMAYSSIAHMGWMTAVL----PYNPTMMLLNLIIYIIMTSTMFTLFMA-----NSTTTTLSLSHTWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 115494889  236 KMPVMTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITA 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 18-296 5.44e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 105.03  E-value: 5.44e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   18 IMVMISS-HWLLVWIGFEMNMLAI-IPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMFSGQWTVMKLFNPVAS 95
Cdd:TIGR01770 115 IFLLVSSnDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSN 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   96 ------------MFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQIFPSI-------NLDMILT 156
Cdd:TIGR01770 195 gmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIFLAI 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  157 ISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTM----MLLNLIIYIIMTSTMFTLFMA------NSTTT 226
Cdd:TIGR01770 275 IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLlrsykdEWIEY 354

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  227 TLSLSHTWNKMPVMTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRL 296
Cdd:TIGR01770 355 ISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 6.36e-179

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 499.37  E-value: 6.36e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   1 MNPIIFILILSTMMMGTIMVMISSHWLLVWIGFEMNMLAIIPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMF 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  81 SGQWTVMKLFNPVASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQIFPSINLDMILTISIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 161 SIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYIIMTSTMFTLFMANSTTTTLSLSHTWNKMPVM 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 241 TILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRLTYSTALTMFPSTNNMKMKWQFSTT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*..
gi 115494889 321 KQMTLLPTMVVLSTMLLPLTPILSVLE 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 7.60e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 382.62  E-value: 7.60e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   1 MNPIIFILILSTMMMGTIMVMISSHWLLVWIGFEMNMLAIIPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMF 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  81 SGQWTVMKLFNPVASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQIFPSiNLDMILTISIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 161 SIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYIIMTSTMFTLFMANSTTTTLSLSHTWNKMPVM 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 241 TILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRLTYSTALTMFPSTNNMKMKWQFSTT 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*.
gi 115494889 321 KQMTLLPTMVVLSTMLLPLTPILSVL 346
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILAL 345
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-343 1.36e-117

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 343.83  E-value: 1.36e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   1 MNPIIFILILSTMMMGTIMVMISSHWLLVWIGFEMNMLAIIPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMF 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  81 SGQWTVMKLFNPVASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQIFPSINLDMILTISIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 161 SIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYIIMTSTMFTLFMANSTTTTLSLSHTWNKMPVM 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 241 TILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRLTYSTALTMFPSTNNMKMKWQFSTT 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|...
gi 115494889 321 KQMtLLPTMVVLSTMLLPLTPIL 343
Cdd:MTH00070 321 TNN-LLSLTIILSLMLLPITPTI 342
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-343 3.75e-116

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 339.88  E-value: 3.75e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   1 MNPIIFILILSTMMMGTIMVMISSHWLLVWIGFEMNMLAIIPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMF 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  81 SGQWTVMKLFNPVASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQIFPSINLDMILTISIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 161 SIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYIIMTSTMFTLFMANSTTTTLSLSHTWNKMPVM 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 241 TILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRLTYSTALTMFPSTNNMKMKWQFsTT 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRT-KP 319

                        330       340
                 ....*....|....*....|...
gi 115494889 321 KQMTLLPTMVVLSTMLLPLTPIL 343
Cdd:MTH00112 320 KKNTLTATLTTLSTLLLPLSPMI 342
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-343 2.36e-93

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 282.20  E-value: 2.36e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   1 MNPIIFILILSTMMMGTIMVMISSHWLLVWIGFEMNMLAIIPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMF 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  81 SGQWTVMKLFNPVASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQIFPSINLDMILTISIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 161 SIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYIIMTSTMFTLFMANSTTTTLSLSHTWNKMPVM 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 241 TILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRLTYSTALTMFPS-----TNNMKMKW 315
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQhsislFSWRNSGN 320

                        330       340
                 ....*....|....*....|....*...
gi 115494889 316 QFSTTKQMTLLPTMVVLSTMLLPLTPIL 343
Cdd:MTH00041 321 ITVYGVILSILSSISILGLLLIPLFLSF 348
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 2.88e-83

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 256.05  E-value: 2.88e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   1 MNPIIFILILSTMMMGTIMVMISSHWLLVWIGFEMNMLAIIPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMF 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  81 SGQWTVMKLFNPVASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQIFPSINLDMILTISIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 161 SIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYIIMTSTMFTLFMANSTTTTLSLSHTWNKMPVM 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 241 TILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRLTYSTALTMFPSTNNMKMKWQFSTT 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 115494889 321 KQMtLLPTMVVLSTMLLPLTPILSVL 346
Cdd:MTH00200 321 SNL-LVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-343 8.87e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 187.72  E-value: 8.87e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   1 MNPIIFILILSTMMMGTIMVMISSHWLLVWIGFEMNMLAIIPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMF 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  81 sgqwtvMKLFNPVASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQIFpsiNLDMILTISIL 160
Cdd:MTH00160  82 ------LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI---NNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 161 SIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYIIMTSTMFTLFMANSTTTTLSLSHTWNKMPVM 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 241 TILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRLTYStalTMFPSTNNMKMKWQFSTT 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYS---SLMLNYNKNKWNLKKKKN 309

                        330       340
                 ....*....|....*....|...
gi 115494889 321 KQMTLLPTMVVLSTMLLPLTPIL 343
Cdd:MTH00160 310 KFSLILNFLSFISLFGLILSSLL 332
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 6-318 3.25e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 170.45  E-value: 3.25e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   6 FILILSTMMMGTIMVMISSHWLLVWIGFEMNMLAIIPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMFSGQWT 85
Cdd:MTH00144   6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  86 VMklfnpvasMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQIFPSINLDMIL-TISILSIMI 164
Cdd:MTH00144  86 SM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLcVISVLSALV 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 165 GGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYiIMTSTMFTLFMANSTTTTLSLSHTWNKMPVMTILV 244
Cdd:MTH00144 158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIY-IVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSI 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 115494889 245 LITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRLTYSTALTMFPSTNNMKMKWQFS 318
Cdd:MTH00144 237 ISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNS 310
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 8-299 7.03e-46

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 159.17  E-value: 7.03e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   8 LILSTMMMGTIMVMISSHWLLVWIGFEMNMLAIIPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMFSGQWTVm 87
Cdd:MTH00011  10 LFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLKN- 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  88 klfnpVASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQIFPSINLDMILTISILSIMIGGW 167
Cdd:MTH00011  89 -----ITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 168 GGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYIIMTSTMFTLFMANSTTTTLSLSHTWNKMPVMTILVLIT 247
Cdd:MTH00011 164 GGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIM 243

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 115494889 248 LLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRLTYS 299
Cdd:MTH00011 244 LLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-300 1.16e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 137.11  E-value: 1.16e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   8 LILSTMMMGTIMVMISSHWLLVWIGFEMNMLAIIPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIinLMFSGQWtvm 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLY--- 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  88 klFNPVASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLyqIFPSINLDMILTISILSIMIGGW 167
Cdd:MTH00197  77 --LSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 168 GGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYIIMTSTMFTLFMANSTTTTLSLSHTWNKMPVMTILVLIT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 115494889 248 LLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRLTYST 300
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS 285
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 6-296 2.62e-30

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 120.22  E-value: 2.62e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   6 FILILSTMMMGTIMVMISSHWLLVWIGFEMNMLAI-IPIMMKKHNPRATEAATKYLLTQSTAS--MLLMMAVI------- 75
Cdd:COG1007  104 FYALLLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSgfLLYGISLLygatgsl 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  76 ----INLMFSGQWTVMKLFnPVASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQI----FP 147
Cdd:COG1007  184 nlagIAAALAAGGANSPLL-LLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveaFP 262

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 148 SINLD---MILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWM-TAVLPYNPTM---MLLNLIIYIIMTSTMFTLFM 220
Cdd:COG1007  263 GLAADwqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLlLGLAAGTPLGvsaALFYLLAYLFMNLGAFAVIL 342

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 221 ANSTTTTLSLSH-----TWNKMPVMTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMR 295
Cdd:COG1007  343 LLSRKGGEAEEIedlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422


                 .
gi 115494889 296 L 296
Cdd:COG1007  423 V 423
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 4-296 7.33e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 113.19  E-value: 7.33e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   4 IIFILILSTMMMgtimvMISSHWLLVWIGFEMNMLAI-IPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMFSG 82
Cdd:MTH00199 102 LILIVALGSLLL-----VSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTG 176

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  83 QWTVMK----LFNPVASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQIFPSINLdmILTIS 158
Cdd:MTH00199 177 ETSIQGinsiLTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNV--VLICA 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 159 ILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNP----TMMLLNLIIYIIMTSTMFT--LFMANSTTTTLSLSH 232
Cdd:MTH00199 255 VLSIIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSiiLSLKLTKGLIVEVSG 334

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 115494889 233 TWNKMPVMTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRL 296
Cdd:MTH00199 335 LSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 15-296 8.05e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 111.66  E-value: 8.05e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  15 MGTIMVMISSHWLLVWIGFEMNMLAI-IPIMMKKHNPRATEAATKYLLTQSTASMLLMMAV-------------IINLMF 80
Cdd:MTH00196   4 LGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsYINLVL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  81 SGQWTVMKLFNPVASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQIFPSINLDMILTisIL 160
Cdd:MTH00196  84 NSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGG--LF 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 161 SIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNP----TMMLLNLIIYIIMTSTMFTLFMA--NSTTTTLSLSHTW 234
Cdd:MTH00196 162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILAlnVYKNLIIEFSGLS 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 115494889 235 NKMPVMTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRL 296
Cdd:MTH00196 242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-286 2.17e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.24  E-value: 2.17e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   23 SSHWLLVWIGFEMNMLAIIPIM-MKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMFSGQWTVMKLFNPVASM----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   97 ------FMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILL-TWQKMAP-----MSVLYQIFPSINLDMILTISILSIMI 164
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  165 GGWGGLNQTQLRKIMAYSSIAHMGWMTAVL----PYNPTMMLLNLIIYIIMTSTMFTLFMA-----NSTTTTLSLSHTWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 115494889  236 KMPVMTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITA 286
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
6-296 7.75e-26

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 107.60  E-value: 7.75e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   6 FILILstMMMGTIMVMISS-HWLLVWIGFEMNMLAI-IPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMFSGQ 83
Cdd:PRK05777 106 YLLVL--FALLGMMVMVSAnDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGS 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  84 WTVMKLFNPVAS------------MFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMS----VLYQIFP 147
Cdd:PRK05777 184 LSFAGIAKALADgsgnsllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAvllrLLVVAFG 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 148 SINLD---MILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWM-TAVLPYNPTM---MLLNLIIYIIMTSTMFT-LF 219
Cdd:PRK05777 264 GLSEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlVGLAAGTAEGysaVLFYLLAYLFMTLGAFGvIS 343

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 220 MANSTTTTLSLSHTWN----KMPVMTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMR 295
Cdd:PRK05777 344 LLRRKGGEAESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLR 423


                 .
gi 115494889 296 L 296
Cdd:PRK05777 424 V 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 18-296 5.44e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 105.03  E-value: 5.44e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   18 IMVMISS-HWLLVWIGFEMNMLAI-IPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMFSGQWTVMKLFNPVAS 95
Cdd:TIGR01770 115 IFLLVSSnDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSN 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   96 ------------MFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQIFPSI-------NLDMILT 156
Cdd:TIGR01770 195 gmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfseaWQIFLAI 274

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  157 ISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTM----MLLNLIIYIIMTSTMFTLFMA------NSTTT 226
Cdd:TIGR01770 275 IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLlrsykdEWIEY 354

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  227 TLSLSHTWNKMPVMTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRL 296
Cdd:TIGR01770 355 ISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 5-296 2.57e-24

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 102.53  E-value: 2.57e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   5 IFILILSTMMMGTIMVMISSHWLLVWIGFEMNMLAIIPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMFSGQW 84
Cdd:COG0651  108 RFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTL 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  85 T------VMKLFNP----VASMFMTMALTMKMGMAPFHFWVPEVTQGIP-----LSSGLILltwqKMAPMS---VLYQIF 146
Cdd:COG0651  188 NmadlaaRLAELDPglllAAFALLLVGFGIKAALFPLHFWLPDAYPAAPspvsaLLSGLLT----KVGVYAilrVLTLLF 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 147 PSINL----DMILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYIIMTSTM-FTLFMA 221
Cdd:COG0651  264 GADPAlflgTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAkALLFLA 343

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 222 NSTTTTLSLSH-------TWNKMPVMTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYM 294
Cdd:COG0651  344 AGAIERATGTRdldklggLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFV 423


                 ..
gi 115494889 295 RL 296
Cdd:COG0651  424 RI 425
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
6-295 2.00e-14

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 73.93  E-value: 2.00e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   6 FILILSTMMMGTIMVMISSHWLLVWIGFEMnmLAIIPIMMK---KHNPRATEAATKYLLTQSTASMLLMMAVIINLMFSG 82
Cdd:PRK02504 112 FAAILLTATLGGMFLSGATELVMIFISLET--LSIASYLLTgymKRDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSG 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  83 QWTVMKLFNP-----------VASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMA----PMSVLYQIFP 147
Cdd:PRK02504 190 GSTQLSAIALalitspslglaLALVFVIAGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFP 269

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 148 SINLD--MILTI-SILSIMIGGWGGLNQTQLRKIMAYSSIAHMGW----MTAVLPYNPTMMLLNLIIYIIMTSTMFT--- 217
Cdd:PRK02504 270 SFDEQwkLLFTAlAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvmigLVAGTEAGYASMVFYLLAYLFMNLGAFAcvi 349

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 115494889 218 LF-MANSTTTTLSLSHTWNKMPVMTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMR 295
Cdd:PRK02504 350 LFsLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIR 428
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-267 1.17e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 71.81  E-value: 1.17e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  15 MGTIMVMISSHWLLVWIGFEMNMLAIIPIMMKKHNPRAT---------EAATKYLLTQSTASMLLMMAVIINLMFSGQWT 85
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNEG 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  86 VMKLF--------------NPVASMFMTMALTMKMGMAPFHFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQIFpsINL 151
Cdd:MTH00198 279 MLGTIlsatlettnielrqGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLV--ITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 152 DMILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLN----LIIYIIMTSTMFTLFMA------ 221
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQAswtyAVTYLVSALASFTVICTleefgt 436

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 115494889 222 ---------------NSTTTTLSLSHTWNKMPVMTILVLITLLSMGGLPPLSGFMPKWMII 267
Cdd:MTH00198 437 rtptsrqrdgsfgnyNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-341 1.49e-12

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 61.50  E-value: 1.49e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 115494889  291 YFYMRLTYSTALTMFPSTNNMKMKWQFSTTKQMTLLPTMVVLSTMLLPLTP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 49-298 4.51e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 66.83  E-value: 4.51e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  49 NPRATEAATKYLLTQSTASMLLMMAVIINLMFSGQWTV-----MKLFNP---VASMFMTMALTMKMGMAPFHFWVPEV-T 119
Cdd:PRK08375 151 DRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMadlagALAENPtvvTAFGFVLLALALKAAVFPLHTWLPRAyP 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 120 QGIPLSSGLILLTWQKMAP---MSVLYQIFPSINLD------MILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWM 190
Cdd:PRK08375 231 AAPPVVTALLSGLVTKVAVyalIRIYFTVFGGDFRFalglgwLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYI 310

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 191 TAVLPYNPTMMLLNLIIYI----IMTSTMF----TLFMANSTTTTLSLSHTWNKMPVMTILVLITLLSMGGLPPLSGFMP 262
Cdd:PRK08375 311 LLGLALLTPLALAAGLLHLlhhaLMKGALFlaagAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVS 390

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 115494889 263 KWMIIQELTKNDSLILPTLMAITALLNLYFYMRLTY 298
Cdd:PRK08375 391 KWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 50-299 2.62e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 64.35  E-value: 2.62e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  50 PRATEAATKYLLTQSTASMLLMMAVII-----NLMFSGQWTVMKLFNP-----VASMFMTMALTMKMGMAPFHFWVPEVT 119
Cdd:PRK08376 168 WEAIEAGIKYMFVGSLASSMVLLGIALlygqyGTLNMAYLAVKMSENPtvvakIALALFIAGLAMKSGAVPVHMWLPDAY 247

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 120 QGIPLSSGLILLTWQK---MAPMSVLYQIF-PSINLD----MILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWM- 190
Cdd:PRK08376 248 PAAPSSISAMLLVIKQaglYALARVLFSIYgPAINLAtvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMl 327

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 191 ----TAVLPYNPT------MMLLNLIIYIIMTSTMFT--LFMANSTTTTLSLSHTWNK-------MPVMTILVLITLLSM 251
Cdd:PRK08376 328 lglgVGLAALGDPamasygEIALAGGIYHIVNHALYKalLFLTAGAVIYETGTRNLNElgglartMPKTTIAFLIGAAAI 407

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 115494889 252 GGLPPLSGFMPKWMIIqELTKNDSLILPTLMAITALLNLYFYMRLTYS 299
Cdd:PRK08376 408 VGLPPFNGFASKWLIY-ESSALFNPILGVIAMIGSVLTLASFVKVFHT 454
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 4-268 3.16e-11

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 64.19  E-value: 3.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889    4 IIFILILSTMMMGtimVMISSHWLLVWIGFEMN---MLAIIPIMMKKHNPRAteaATKYLLTQSTASmLLMMAVIINLMF 80
Cdd:TIGR01972 109 YALLLLLEAGVIG---VFLALDLFLFYVFWEAMlipMYLLIGVWGGPNRIYA---AMKFFLYTLAGS-LLMLLAILGLYF 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   81 SGQWTV------MKLFNPVASMFMTMAL----TMKMGMAPFHFWVPEV-----TQGIPLSSGLILltwqKMAP---MSVL 142
Cdd:TIGR01972 182 LGGGTFdllellNLPLPFGVQTWLFLAFfiafAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTygfLRFN 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  143 YQIFPS---INLDMILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMT-AVLPYNPTMM---LLNLIIYIIMTSTM 215
Cdd:TIGR01972 258 LPLFPDaslYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLlGIFSFNELGIsgaVFQMISHGLITAAL 337

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 115494889  216 F----TLFMANSTTTTLSLSHTWNKMPVMTILVLITLLSMGGLPPLSGFMPKWMIIQ 268
Cdd:TIGR01972 338 FllvgVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILL 394
ndhB CHL00049
NADH dehydrogenase subunit 2
 47-296 7.52e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 63.10  E-value: 7.52e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  47 KHNPRATEAATKYLLTQSTASMLLMM-----------AVIINLMFSGqWTVMKLFNPVAS----MFMTMALTMKMGMAPF 111
Cdd:CHL00049 155 KKDVRSNEATMKYLLMGGASSSILVYgfswlyglsggEIELQEIVNG-LINTQMYNSPGIsialIFITVGIGFKLSLAPF 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 112 HFWVPEVTQGIPLSSGLILLTWQKMAPMSVLYQI----FPSINLD--MILTI-SILSIMIGGWGGLNQTQLRKIMAYSSI 184
Cdd:CHL00049 234 HQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIfdipFYFSSNEwhLLLEIlAILSMILGNLIAITQTSMKRMLAYSSI 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 185 AHMGW-MTAVLPYNP----TMMLLNLIIYIIMTSTMF---TLF-MANSTTTTLSLSHTWNKMPVMTILVLITLLSMGGLP 255
Cdd:CHL00049 314 GQIGYvIIGIIVGDSndgyASMITYMLFYIFMNLGTFaciVLFgLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIP 393

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 115494889 256 PLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRL 296
Cdd:CHL00049 394 PLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 43-342 1.25e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 62.30  E-value: 1.25e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  43 IMMKKHNPRATEAATKYLLTQSTASMLLMMAVII-------------NLMFSGQW---TVMKLFNPVASMFMTMAL---- 102
Cdd:PRK12667 153 VAYYRDRGDAVEAAIKYALIGAVGTTLYFLALAFlyatfgtlnmadlSAKIRGLSfplTGGLAGNPPLALGVALALalwa 232

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 103 -TMKMGMAPFHFWVPEVTQGIP-----LSSGLILLTwQKMAPMSVLYQIF--PSINLDMILTISIL-------SIMIGGW 167
Cdd:PRK12667 233 fTIKAAIFPNHFWLPDAHPAAPspvsaMLSGLVVNV-GAYAIIRFLYTIFgiSPSLIDFRAALSPIliilgavSAIIGAL 311

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 168 GGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYIIMTSTMFT-LFMANSTTTTLS-------LSHTWNKMPV 239
Cdd:PRK12667 312 MMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSlLFLASGVFIHAAgtrdideLAGLGRKMPI 391

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 240 MTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRLTYSTALTMFPSTNNMKMKWQFST 319
Cdd:PRK12667 392 ASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVEHKESPSM 471

                        330       340
                 ....*....|....*....|...
gi 115494889 320 TKQMTLLPTMVVLSTMLLPLTPI 342
Cdd:PRK12667 472 SVVILVLALAVLILGILALFLPE 494
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 5-267 4.12e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.78  E-value: 4.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   5 IFILILSTMMMGtimVMISSHWLLVWIGFEmnmLAIIP----IMMKKHNPRAtEAATKYLLTQSTASMLLMMAVIINLMF 80
Cdd:COG1008  115 ALLLLLEAGMIG---VFLALDLFLFYVFWE---LMLIPmyflIGIWGGERRI-YAAIKFFLYTLAGSLLMLVAILALYFL 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  81 SGQWT------VMKLFNPVASMF----MTMALTMKMGMAPFHFWVPEV-----TQGIPLSSGLILltwqKMAPMSVL--- 142
Cdd:COG1008  188 AGALTfdiaelAAAPLPLTAQLLlflaFFIAFAVKVPMFPFHTWLPDAhveapTAGSVLLAGVLL----KMGGYGLLrfa 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 143 YQIFP---SINLDMILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMT-AVLPYNPTMM---LLNLIIYIIMTSTM 215
Cdd:COG1008  264 LPLFPeasAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLlGIFALNPLGLqgaVLQMVSHGLITAAL 343

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 115494889 216 F-----------TLFMANsttttlsLSHTWNKMPVMTILVLITLLSMGGLPPLSGFMPKWMII 267
Cdd:COG1008  344 FllvgvlydrthTRDIAD-------LGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL 399
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-300 1.07e-08

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 56.70  E-value: 1.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  48 HNPRATEAATKYLLTQSTASMLLMMAVIINLMFSGQWTVMKLFN----PVASMFMTMALTM-------KMGMAPFHFWVP 116
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptILSSPLLTLILLLlllgafgKSAQFPLHFWLP 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 117 E-----------------VTQGIPLssglilltwqkMAPMSVLYQIFPSInLDMILTISILSIMIGGWGGLNQTQLRKIM 179
Cdd:COG1009  236 DamegptpvsallhaatmVKAGVYL-----------LARLSPLFALSPVW-LTVVAIIGAITALFAALIALAQTDIKRVL 303

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 180 AYSSIAHMGWMTAVLpynpTMMLLNLIIYIIMTSTMF--TLFM-------ANSTTTTLSLSHTWNKMPVMTILVLITLLS 250
Cdd:COG1009  304 AYSTVSQLGYMFLAL----GVGAYVAALFHLLTHAFFkaLLFLgagsvihATGTRDIRKMGGLRKKMPITAITFLIGALS 379

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 115494889 251 MGGLPPLSGFMPKWMIIQEL--TKNDSLILPTLMAITALLNLYFYMRLTYST 300
Cdd:COG1009  380 LAGIPPFAGFFSKEAILEAAleAGGLGPLLLAVALLGAFLTAFYSFRLFFLV 431
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-307 1.46e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 56.16  E-value: 1.46e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   2 NPIIFILILSTMMMGTIMVMISSHWLLVWIGFEMNMLAIIpIMMKKHNPRATEAATKYLLTQSTASMLLMMAV------- 74
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSF-MMVPMGKKESRKASLKYFVLSAIGAYAMLYAIfliyakt 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  75 -------IINLMFSGQWTVMKLFnpvASMFMTMALTMKMGMAPFHFWVPEVTQGIP------LSSGLI------------ 129
Cdd:PRK08668 175 gtfdfadISQGLINDTSTGFALI---VFLFLLAFGVAKAGIFPLHVWAPDAYSEAPqsfsavLSGQLSklgaygfllvly 251

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 130 LLTWQKMAPMSVLYQIFPSINLdMILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVL----PYNPTMMLLNL 205
Cdd:PRK08668 252 VLPGTKLFSEFGTYRGVPLFNY-ILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLglgtSLGFAGGLFHV 330

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 206 IIYIIMTSTMFTLFMANSTTTTLSLSHTWN----KMPVMTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTL 281
Cdd:PRK08668 331 FNHALFKGLFFLIFAAVIYRTGTTKISEMGglieKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFM 410

                        330       340
                 ....*....|....*....|....*.
gi 115494889 282 MAITALLNLYFYMRLTYSTALTMFPS 307
Cdd:PRK08668 411 AFFGSIGSFLYVFRPLAGVFLGQLPS 436
PRK12650 PRK12650
DUF4040 family protein;
6-263 1.47e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 53.12  E-value: 1.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   6 FILILSTMMMGTIMVMISSHWLLVWIGFEMNMLAIIpIMMKKHNPRATEAATKYLLTQSTASMLLMMAVII--------- 76
Cdd:PRK12650 112 FYLLMTAFMAAMLLLVLADDVVVLFVAWELVSLASF-FLIARSGSGGEAGSIRTLILTFFGGLTLLAAVAIaatqtgtts 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  77 --NLMFSGQWTVMKLFNPVASMFMTMALTMKMGMAPFHFWVPEVTQGI-PLSS----------GLILLTwqkmaPMSVLY 143
Cdd:PRK12650 191 lsGILHSDVWAEKPGLTTVVAVLIAVAAFTKSAQFPFHFWLPEAMAAItPVSAflhaaavvkaGIYLLL-----RFSPVF 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 144 QIFPSINLDMIlTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVL----PYNPTMMLLNLIIYIIMTSTMFTLF 219
Cdd:PRK12650 266 HDVAVWNWLLI-IVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIgvgtPFALTAAVVHTLAHALFKSSLFMLI 344

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 115494889 220 ----MANSTTTTLSLSHTWNKMPVMTILVLITLLSMGGLPPLSGFMPK 263
Cdd:PRK12650 345 gvvdHQAGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
139-296 1.58e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 52.64  E-value: 1.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 139 MSVLYQIFPSINLDMILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIY-----IIMTS 213
Cdd:PRK12663 260 FTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYlvhdmVVKTA 339

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 214 TMFTLFMANSTTTTLSLSHT---WNKMPVMTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNL 290
Cdd:PRK12663 340 LFLIAGSLVRLTGYRSLQYLgglYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITM 419


                 ....*.
gi 115494889 291 YFYMRL 296
Cdd:PRK12663 420 YSLFRI 425
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
8-302 3.29e-06

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 48.49  E-value: 3.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   8 LILSTMMMGT---IMVMISSHWLLVWIGFEMNMLAIIPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMFSGQW 84
Cdd:PRK06277 101 LYVFLMLMGLasvSAIVLADDIFNLYVFFEIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTL 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  85 TV-----MKLFNPVASMFMTMALTMKMGMA------PFHFWVPEVTQGIPLSSGLILLTWQK---MAPMSVLYQIF---- 146
Cdd:PRK06277 181 NItdihnALLVNPTSPVIYGGLLLLIFGLLygsglpPFHTIKSDIYAKAKPFGSALLQTFSKfvlVALMLVIFKLFggls 260

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 147 --PSINLDMILtISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVL----PYNPTMMLLNLIIYIIMTSTMF---- 216
Cdd:PRK06277 261 yfPSAQGVLIA-LSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLalgtPLGIVAGIFHAINHVIYKSALFlgag 339

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 217 TLFMANSTTTTLSLSHTWNKMPVMTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRL 296
Cdd:PRK06277 340 IVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKA 419


                 ....*.
gi 115494889 297 TYSTAL 302
Cdd:PRK06277 420 FYLIYL 425
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 101-263 3.43e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 48.77  E-value: 3.43e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 101 ALTmKMGMAPFHFWVPEVTQG-IPLS----------SGLILLTwqKMAPMsvlYQIFPSINLdMILTISILSIMIGGWGG 169
Cdd:PRK12644 213 ALS-KSAIVPFHFWLPGAMAApTPVSaylhaaamvkAGIYLVA--RLAPG---FADVPVWRP-TVLVLGLATMLLGGWRA 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 170 LNQTQLRKIMAYSSIAHMGWMTAVLPY-NPTMMLLNLIIyiIMTSTMF--TLFM-------ANSTTTTLSLSHTWNKMPV 239
Cdd:PRK12644 286 LRQHDLKLILAYGTVSQLGFLTVLVGIgTRDAALAGLAM--LLAHALFkaALFLvvgiidhSTGTRDIRKLSGLGRRQPV 363

                        170       180
                 ....*....|....*....|....
gi 115494889 240 MTILVLITLLSMGGLPPLSGFMPK 263
Cdd:PRK12644 364 LAVVAALAAASMAGLPPLLGFVAK 387
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 153-342 8.17e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 47.42  E-value: 8.17e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 153 MILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYIIMTSTMFT-LFMAN-------ST 224
Cdd:PRK12662 281 VFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSaLFMVSgsisyhfGT 360

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 225 TTTLSLSHTWNKMPVMTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRLTYSTALTM 304
Cdd:PRK12662 361 TKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKIVEALYFES 440

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 115494889 305 fPSTNNMKMKWQFSTTKQMTLLPTMVVLSTMLLPLTPI 342
Cdd:PRK12662 441 -RMVESKANDKAFKTPNAMVLCIWIMAILSIIVGIYPI 477
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 4-191 1.51e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 46.73  E-value: 1.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   4 IIFILILSTMMMGtimVMISSHWLLVWIGFEMNMLAIIPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIInlMFSGQ 83
Cdd:PRK05846 114 MAALLWLEGGVIG---VFAALDLLLFYVFFEAMLIPMYFLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAIIY--LVVVY 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  84 WTVMKLFNPVASMFMTMALTM--------------KMGMAPFHFWVPEV-----TQGIPLSSGLILltwqKMAP---MSV 141
Cdd:PRK05846 189 YNATGTFDIADLLNLPLPPGVqywlflaffiafavKMPMFPLHTWLPDAhvqapTAGSVLLAGILL----KMGAyglLRF 264

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 115494889 142 LYQIFPSINLD---MILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMT 191
Cdd:PRK05846 265 SLPLFPDASHEfapIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVT 317
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 145-291 1.86e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 46.11  E-value: 1.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 145 IFPSINLD-MILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYI---IMTSTmfTLFM 220
Cdd:PRK12665 266 LFPGGGLDtLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVahhITVQT--TLFL 343

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 221 ANSTTTTLSLSHTWNKM-------PVMTILVLITLLSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMA---ITALLNL 290
Cdd:PRK12665 344 VVGLIERQAGSSSLRRLgglakasPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAEDGTWLAWALVAggvVTSLLTL 423


                 .
gi 115494889 291 Y 291
Cdd:PRK12665 424 Y 424
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 100-326 4.51e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 44.91  E-value: 4.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 100 MALTMKMGMAPFHFWVPEVTQGIPLSSGL----ILLTWQKMAPMSVLYQIFP--SINL-DMILTISILSIMIGGWGGLNQ 172
Cdd:MTH00226 238 LAMAVKIPIFPFHIWLPKAHVEAPVAGSVllagILLKLGGYGLVRLSWPILPlgAQNLaPAVIAMGIVGIVYGSFATCRQ 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 173 TQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYI----IMTSTMFTLFMANSTTTTLSLSHTWN----KMPVMTILV 244
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMlahgIVSSLLFILVTILYDRHHTRLIKYYRglsiTMPIWGTIM 397

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 245 LITLLSMGGLPPLSGFMPKWMIIQELTKNDSLI---LPTLMAITALLNLYFYMRLTYSTALTMFPSTNNMKMKwQFSTTK 321
Cdd:MTH00226 398 IVTSLANVAVPPSGNFIGEYLSILSSFNWNPIIgvfVCSGVILSAVYSFYFANRVTFGAPGNLITFARDVNRR-EFYITA 476


                 ....*
gi 115494889 322 QMTLL 326
Cdd:MTH00226 477 SMVFF 481
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 5-190 1.35e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 43.59  E-value: 1.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   5 IFILILSTMMMGTIMVMISSHWLLVWIGFEMNML---AIIPIMMKKHNpraTEAATKYLLTQSTASMLLMMAVIINLMFS 81
Cdd:PRK08676 103 VFYLGFNLLLSVITFAFFSDNLALFWIFAELTTVfsaMLIAILSAREN---IDAALKYIFIASTAMIFAFIGLIFLFSLT 179

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  82 GQ--------WTVM----KLFNP----VASMFMTMALTMKMGMAPFHFWVPEVTQGIP-----LSSGLIL----LTWQKM 136
Cdd:PRK08676 180 RQalgtgtlnWTELaahaSLLSPsvlgASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPsvvsaLLSGTVLnigiYGILRL 259

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 115494889 137 APMSVLYQIFPSINLdMILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWM 190
Cdd:PRK08676 260 SALLRQSGAAEQFSN-VLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLM 312
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 100-191 3.74e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 41.97  E-value: 3.74e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 100 MALTMKMGMAPFHFWVPEVTQGIPLSSGL----ILLTWQKMAPMSVLYQIFPSINL---DMILTISILSIMIGGWGGLNQ 172
Cdd:MTH00204 217 LSLAVKIPQIPFHIWLPQAHVEAPVAGSVilagILLKLGGYGFLRFSWPLFPAASEyfaPLIVMLSVIAVIYGSLTTCRQ 296

                         90
                 ....*....|....*....
gi 115494889 173 TQLRKIMAYSSIAHMGWMT 191
Cdd:MTH00204 297 VDFKRLIAYSSVAHMGLVP 315
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 52-312 4.68e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 41.99  E-value: 4.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  52 ATEAATKYLLTQSTASMLLMMAVIINLMFSGQWTVMKLFNPVAS----------MFMTMALTMKMGMAPFHFWVPEVTQG 121
Cdd:MTH00020 160 ANKAAIKAMLVNRVGDIGLLLAMFLLWDRFGSLDFSSVFNMVVSapssditlicLFLFIGAVGKSAQLGLHTWLPDAMEG 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 122 IPLSSGLILLTWQKMA------PMSVLYQIFPSInLDMILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMT-AVL 194
Cdd:MTH00020 240 PTPVSALIHAATMVTAgvflliRSSPLFEQAPLA-LIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVvACG 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 195 PYNPTMMLLNLIIYIIMTSTMFtlFMANSTTTTLSLSHTWNKM-------PVMTILVLITLLSMGGLPPLSGFMPKWMII 267
Cdd:MTH00020 319 LSHYSISLFHLMNHAFFKALLF--LSAGSVIHALSDEQDMRKMgglisflPLTYIFFLIGSLSLMGFPYLTGFYSKDLIL 396

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 115494889 268 QELTKNDSLILPTLMAI-TALLNLYFYMRLTYstaLTMFPSTNNMK 312
Cdd:MTH00020 397 ELAFGQYYLIFAYWLGCfSALLTAFYSIRLIY---LTFLSNTNLKK 439
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 110-288 5.39e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.83  E-value: 5.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 110 PFHFWVPEVTQG-IPLSSGLILLTWQKmAPMSVLYQIFPSIN-----LDMILTISILSIMIGGWGGLNQTQLRKIMAYSS 183
Cdd:PRK12647 213 PFHFWLPNAMEApTPVSAYLHSATMVK-AGIYLLARLNPVLGgtplwQTILPLFGGLTMLTGALLAVRQTDLKLILAYST 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 184 IAHMGWMTAVLPYNPTMMLLNLIIYIIMTStMF--TLFMANSTT-------TTLSLSHTWNKMPVMTILVLITLLSMGGL 254
Cdd:PRK12647 292 VSALGTLVMLLGLGSELAIKAAVLFLVAHS-LYkgALFMVAGIIdhetgtrDITKLGGLRRAMPITAAAALLAALSMAGL 370

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 115494889 255 PPLSGFMPKWMIIQELTKND--SLILPTLMAITALL 288
Cdd:PRK12647 371 PPLFGFLAKELIYEALLEAPlwSLILTVAAVLGNAL 406
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 107-272 6.31e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 41.74  E-value: 6.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 107 GMAPFHFWVPEVTQGIP------LSSGLILLTWQKMAPMSVLYQIFPSINLDMILTISILSIMIGGWGGLNQTQLRKIMA 180
Cdd:PRK08042 195 GIIPLHGWVPQAHANASapaaalFSTVVMKIGLLGILTLSLLGGNAPLWWGVALLVLGMITAFVGGLYALMEHNIQRLLA 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 181 YSSIAHMG--------WMTAVLPYNPTMMLLNLI--IYIIMTSTMF--TLFMANSTTTTLS-------LSHTWNKMPVMT 241
Cdd:PRK08042 275 YHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLFksVLFLGAGSVWFRTghrdiekLGGIGKKMPVIS 354

                        170       180       190
                 ....*....|....*....|....*....|.
gi 115494889 242 ILVLITLLSMGGLPPLSGFMPKWMIIQELTK 272
Cdd:PRK08042 355 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 5-290 7.16e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 41.25  E-value: 7.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889   5 IFILILSTMMMGTIMVMISSHWLLvwigfeMNMLAIIPIMMKKHNPRATEAATKYLLTQSTASMLLMMAVIINLMFSGQW 84
Cdd:PRK08667 119 LFILSMLGVVASANTFSFLFFWEI------MALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSF 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  85 TVMKLFNPVAS-----MFMTMALTMKMGMAPFHFWVPEVTQGIP-----LSSGLILLTwQKMAPMSVLYQIF-PSINLDM 153
Cdd:PRK08667 193 ELSPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPASPsnvsaLMSGVMLKV-AVYGLVRFLMDVLsPELWWGV 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 154 -ILTISILSIMIGGWGGLNQTQLRKIMAYSSIAHMG--------WMTAVLPYNPTMMLLNL-------IIYIIMTSTMF- 216
Cdd:PRK08667 272 lILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVYGLDTLALLALggalfhsLNHALFKSLLFl 351

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 217 ---TLFMANSTTTTLSLSHTWNKMPVMTILVLITLLSMGGLPPLSGFMPKWMI----IQELTKNDSLILPTLMAITALLN 289
Cdd:PRK08667 352 tagSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLyesfFQSFSVADPLIKILLFSVLAIFA 431


                 .
gi 115494889 290 L 290
Cdd:PRK08667 432 L 432
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 104-296 7.31e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 41.09  E-value: 7.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 104 MKMGMAPFHFWVPEVTQGIPLS-SGLI--LLT----WQKMAPMSVLYQIFPSINLDMILTISILSIMIGGWGGLNQTQLR 176
Cdd:PRK07691 221 TKAGLFPLYFWLPGSYYAPPIAiAALFgaLLTkvgvYAIARTFTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIK 300

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 177 KIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYIIMTSTMFT-LFMANSTTTTLSLSHTWNKM-------PVMTILVLITL 248
Cdd:PRK07691 301 KIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAaLFLLIGIMIKITGTTDLKKMgglikryPVLGWMFFIAA 380

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 115494889 249 LSMGGLPPLSGFMPKWMIIQELTKNDSLILPTLMAITALLNLYFYMRL 296
Cdd:PRK07691 381 LSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 100-191 1.29e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 40.42  E-value: 1.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 100 MALTMKMGMAPFHFWVPEVTQGIPLSSGLIL--------------LTWQKMAPMSVLYQIFpsinldmILTISILSIMIG 165
Cdd:MTH00217 214 LSLAIKIPKIPFHIWLPQAHVEAPVAGSVILagvllklggygfirFSWPLLPEASEYFSPL-------IQTLSLLAIIYG 286

                         90       100
                 ....*....|....*....|....*.
gi 115494889 166 GWGGLNQTQLRKIMAYSSIAHMGWMT 191
Cdd:MTH00217 287 SLTTCRQVDLKRIIAYSSVAHMGLVT 312
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 10-288 8.38e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 37.85  E-value: 8.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  10 LSTMMMGTIMVMISSHWLLVWIGFE-MNMLAIIPIMMKKHNPRAteaATKYLLTQSTASMLLMMAVIINLMFSGQWTVMK 88
Cdd:PRK06459  78 YILTILGMAIVLTSDNYLLFLAGWEiMTIPSYVAIALTKKNKRP---AFVFMAFGELSTVLILAGFAWAFIISGTTNFSY 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889  89 LFNPVASMFMTMALTMKMGMAPFHF--WVPEVTQGIP------LSSGLILLTWQKMAPMSVLYQIFPSINLDM-ILTISI 159
Cdd:PRK06459 155 LPSPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPsnfsaiLSATMTLMGVYGILKMTILTQTIPIGYFGLtILAIGA 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115494889 160 LSIMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAVLPYNPTMMLLNLIIYIIMTSTMFT-----------LFMANSTTTTL 228
Cdd:PRK06459 235 FSILFGALYAYVSENVKGLLAFSTIENNGAILVALGLYMVTKQLITSIEHFSLITVILysfahsvaktgLFLSSGLQEKQ 314

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 115494889 229 SLSHTWNKMPVMTIL-VLITLLSMGGLPPLSGFMPKWMIIQELTKNdSLILPTLMAITALL 288
Cdd:PRK06459 315 SITYSKKIRNRWIELgLTLLASSLSGLLPNIGGVASWLLLESLFMF-AYVLHNVISILFIV 374
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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