NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1152003040|ref|NP_001336058|]
View 

coiled-coil domain-containing protein 24 isoform 4 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CCDC24 super family cl24291
Coiled-coil domain-containing protein 24 family; This family of proteins is found in ...
 7-72 9.21e-28

Coiled-coil domain-containing protein 24 family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 187 and 319 amino acids in length. There are two completely conserved residues (G and P) that may be functionally important.


The actual alignment was detected with superfamily member pfam15669:

Pssm-ID: 464792  Cd Length: 195  Bit Score: 102.41  E-value: 9.21e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1152003040   7 SGHRDLSIIKDQLNVSNIDQVARHLRGLLEEECHTLEREILILQRCLEEEYLRPCHPSEAALEPTL 72
Cdd:pfam15669 130 SSPDDLKSIKDKLNVSDIDQVAEHLRELLEEECDALERDIEYLQECLEEEHDFQKQPSAAAPEPTL 195
 
Name Accession Description Interval E-value
CCDC24 pfam15669
Coiled-coil domain-containing protein 24 family; This family of proteins is found in ...
 7-72 9.21e-28

Coiled-coil domain-containing protein 24 family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 187 and 319 amino acids in length. There are two completely conserved residues (G and P) that may be functionally important.


Pssm-ID: 464792  Cd Length: 195  Bit Score: 102.41  E-value: 9.21e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1152003040   7 SGHRDLSIIKDQLNVSNIDQVARHLRGLLEEECHTLEREILILQRCLEEEYLRPCHPSEAALEPTL 72
Cdd:pfam15669 130 SSPDDLKSIKDKLNVSDIDQVAEHLRELLEEECDALERDIEYLQECLEEEHDFQKQPSAAAPEPTL 195
 
Name Accession Description Interval E-value
CCDC24 pfam15669
Coiled-coil domain-containing protein 24 family; This family of proteins is found in ...
 7-72 9.21e-28

Coiled-coil domain-containing protein 24 family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 187 and 319 amino acids in length. There are two completely conserved residues (G and P) that may be functionally important.


Pssm-ID: 464792  Cd Length: 195  Bit Score: 102.41  E-value: 9.21e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1152003040   7 SGHRDLSIIKDQLNVSNIDQVARHLRGLLEEECHTLEREILILQRCLEEEYLRPCHPSEAALEPTL 72
Cdd:pfam15669 130 SSPDDLKSIKDKLNVSDIDQVAEHLRELLEEECDALERDIEYLQECLEEEHDFQKQPSAAAPEPTL 195
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH