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Conserved domains on  [gi|1150150960|ref|YP_009349941|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Kuwayamaea chinensis]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 9.18e-42

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 133.36  E-value: 9.18e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   3 LMFMMSIMTIILCSIIMLLASLLSKKSIHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVIISQ 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1150150960  83 WSNIMSWSLITIFFLMILLVGLFHEWNQGALEW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 9.18e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 133.36  E-value: 9.18e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   3 LMFMMSIMTIILCSIIMLLASLLSKKSIHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVIISQ 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1150150960  83 WSNIMSWSLITIFFLMILLVGLFHEWNQGALEW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 3.38e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 95.95  E-value: 3.38e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960  19 MLLASLLSKKSiHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPI-VIISQWSNIMSWSLitIFFL 97
Cdd:pfam00507   1 LLLSRLLGPKR-PNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWaVSFRELGWFGFVEM--LIFI 77

                          90
                  ....*....|....*..
gi 1150150960  98 MILLVGLFHEWNQGALE 114
Cdd:pfam00507  78 AILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-115 2.01e-25

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 92.11  E-value: 2.01e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   2 WLMFMMSIMTIILCSIIMLLASLLSKKSiHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVIIs 81
Cdd:COG0838     6 LPILIFLLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVV- 83

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1150150960  82 qWSNIMSWSLITIF-FLMILLVGLFHEWNQGALEW 115
Cdd:COG0838    84 -FRELGWFGLIEMLvFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 9.18e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 133.36  E-value: 9.18e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   3 LMFMMSIMTIILCSIIMLLASLLSKKSIHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVIISQ 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1150150960  83 WSNIMSWSLITIFFLMILLVGLFHEWNQGALEW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 4.20e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 131.90  E-value: 4.20e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   1 MWLMFMMSIMTIILCSIIMLLASLLSKKSIHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVII 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1150150960  81 SQWSNIMSWSLITIFFLMILLVGLFHEWNQGALEWAS 117
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 2.13e-34

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 115.09  E-value: 2.13e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   1 MWLMFMMSIMTIILCSIIMLLASLLSKKSIHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVII 80
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1150150960  81 SQWSNIMSWSLITIFFLMILLVGLFHEWNQGALEWA 116
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWV 116
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-117 1.17e-31

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 108.02  E-value: 1.17e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   1 MWLMFMMSIMTIILCSIIMLLASLLSKKSIHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVII 80
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1150150960  81 SQWSNIMSWSLITIFFLMILLVGLFHEWNQGALEWAS 117
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWSS 117
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 5-116 3.45e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 101.55  E-value: 3.45e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   5 FMMSIMT-IILCSIIMLLASLLSKKSIHNrEKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVIISQW 83
Cdd:MTH00106    3 LMLTLLTnTLLASLLVLIAFWLPQLNIYS-EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQT 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1150150960  84 SNIMSWSLITIFFLMILLVGLFHEWNQGALEWA 116
Cdd:MTH00106   82 NNLNTMLTMALLLISLLALSLAYEWTQKGLEWT 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 7.65e-29

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 100.83  E-value: 7.65e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   1 MWLMFMMSIMTIILCSIIMLLASLLSKKSIHNrEKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVII 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDL-EKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1150150960  81 SQWSNIMSWSLITIFFLMILLVGLFHEWNQGALEWA 116
Cdd:MTH00042   80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWA 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 6-116 2.62e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 99.22  E-value: 2.62e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   6 MMSIMTI-ILCSIIMLLASLLSKKSIHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIviisQWS 84
Cdd:MTH00136    4 ITTILTItIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPL----PWG 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1150150960  85 NIMSWSLITIFF----LMILLVGLFHEWNQGALEWA 116
Cdd:MTH00136   80 DQLPSPLLTFFWatavLILLTLGLIYEWLQGGLEWA 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 3.38e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 95.95  E-value: 3.38e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960  19 MLLASLLSKKSiHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPI-VIISQWSNIMSWSLitIFFL 97
Cdd:pfam00507   1 LLLSRLLGPKR-PNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWaVSFRELGWFGFVEM--LIFI 77

                          90
                  ....*....|....*..
gi 1150150960  98 MILLVGLFHEWNQGALE 114
Cdd:pfam00507  78 AILLVGLVYAWKKGALE 94
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-116 8.80e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 95.45  E-value: 8.80e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   3 LMFMMSIMTIILcSIIMLLASLLSKKSIHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVIISQ 82
Cdd:MTH00069    1 LIMLMLLISTIL-SLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQ 79

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1150150960  83 WSNIMSWSLITIFFLMILLVGLFHEWNQGALEWA 116
Cdd:MTH00069   80 LNTPTNTLFWSTLILILLTLGLIYEWIQGGLEWA 113
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 3-116 1.38e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 94.95  E-value: 1.38e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   3 LMFMMSIMTIILCSIIMLLASLLSKKSIHNrEKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVIISQ 82
Cdd:MTH00113    2 NLISMLTISLALSTILTTLNFWLTQTKPDN-EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1150150960  83 WSNIMSWSLITIFFLMILLVGLFHEWNQGALEWA 116
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-115 2.01e-25

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 92.11  E-value: 2.01e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   2 WLMFMMSIMTIILCSIIMLLASLLSKKSiHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVIIs 81
Cdd:COG0838     6 LPILIFLLVALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVV- 83

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1150150960  82 qWSNIMSWSLITIF-FLMILLVGLFHEWNQGALEW 115
Cdd:COG0838    84 -FRELGWFGLIEMLvFIAILLVGLIYAWKKGALEW 117
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-115 1.59e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 89.57  E-value: 1.59e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   1 MWLMFMMSIMTIILCSIIMLLASLLSKkSIHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVII 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAFWLPK-VNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1150150960  81 SQWSNimSWSLITIFFLMILLVGLFHEWNQGALEW 115
Cdd:MTH00203   80 NQLSS--LSLLLAFLFLILLTLGLIYEWLQGGLEW 112
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 9-116 3.98e-23

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 86.46  E-value: 3.98e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   9 IMTIILCSIIMLLASLLSKKSiHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLP-IVIISQWSNIM 87
Cdd:PRK06602   16 IVAIGLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPwAVSFREIGWLG 94

                          90       100
                  ....*....|....*....|....*....
gi 1150150960  88 SWSLitIFFLMILLVGLFHEWNQGALEWA 116
Cdd:PRK06602   95 FVEA--MIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 4-115 7.90e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 75.10  E-value: 7.90e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   4 MFMMSIMTIILCSIIMLLASLLSKKSiHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVIISQW 83
Cdd:MTH00018    3 LFILLIFSVVLSALFSGASYFLGVKQ-PDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQ 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1150150960  84 SNIMSWSLItIFFLMILLVGLFHEWNQGALEW 115
Cdd:MTH00018   82 IAPFGFWTM-VGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-115 8.96e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 75.13  E-value: 8.96e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   1 MWLMFMMSIMTIILCSIIMLLASLLSKKSiHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVII 80
Cdd:MTH00055    5 FLGIFILLLFSIGLSTVISGASYIVGVKQ-PDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVV 83

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1150150960  81 SQWSNIMSWsLITIFFLMILLVGLFHEWNQGALEW 115
Cdd:MTH00055   84 YNQIGLFGF-WVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 10-115 7.76e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 65.34  E-value: 7.76e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960  10 MTIILCSIIMLLASLLSKKSIHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVIISQWSNIMSW 89
Cdd:MTH00030   18 IILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSF 97

                          90       100
                  ....*....|....*....|....*.
gi 1150150960  90 SLITIfFLMILLVGLFHEWNQGALEW 115
Cdd:MTH00030   98 WIVYT-FLIVLAIGLAYEWIKGGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 12-115 2.19e-12

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 58.85  E-value: 2.19e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960  12 IILCSIIMLLASLLSKKSIHNR---EKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVIISQWSNImS 88
Cdd:CHL00022   14 LIISSLIPILAFLISGLLAPISkgpEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV-S 92

                          90       100
                  ....*....|....*....|....*..
gi 1150150960  89 WSLITIFFLMILLVGLFHEWNQGALEW 115
Cdd:CHL00022   93 AFIEALIFVLILIVGLVYAWRKGALEW 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
5-117 1.90e-10

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 53.90  E-value: 1.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   5 FMMSIMTIILCSIIMLLASLLSKK-SIHNRE--KNSPFECGFDP-KSPARLpfSLRFFLIAVVFLIFDVEIALLLPIVII 80
Cdd:PRK08489   14 FVLLVLTFVAFFLTTRLARFISRKlAQKNTEklKLAIYECGPEPvKQPNRI--SSHFYIMALLFILFDVEIVFMFPWAVD 91

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1150150960  81 SQwsnIMSW-SLITIF-FLMILLVGLFHEWNQGALEWAS 117
Cdd:PRK08489   92 FK---LLGLfGLIEMLlFIVLLTIGFIYAWKKGALEWQS 127
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
13-115 4.06e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 50.51  E-value: 4.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960  13 ILCSIIMLLASLLSKKSIHNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVIIsqWSNIMSWSLI 92
Cdd:PRK07756   20 ILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVA--YDKLGLFALI 97

                          90       100
                  ....*....|....*....|....
gi 1150150960  93 TIF-FLMILLVGLFHEWNQGALEW 115
Cdd:PRK07756   98 EMLiFVVMLLVGLAYAWKKKVLQW 121
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 19-115 1.38e-07

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 46.20  E-value: 1.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960  19 MLLASLLSKKSiHNREKNSPFECGFDPKSPARLP--FSLRFFLIAVVFLIFDVEIALLLPIVIISQWSNIMSWSLITIFF 96
Cdd:PRK07928   22 VVVASLVGPKR-YNRAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFGLVEMALFM 100

                          90
                  ....*....|....*....
gi 1150150960  97 LMILlVGLFHEWNQGALEW 115
Cdd:PRK07928  101 LTVF-VAYAYVWRRGGLEW 118
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 37-115 2.15e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 40.65  E-value: 2.15e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1150150960  37 SPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLPIVIISQWSNIMSWSLitiFFLMILLVGLFHEWNQGALEW 115
Cdd:MTH00060   39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQGLLFYNFWYYY---FFLLLLFLGFVVELFSGYVRW 114
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 1.06e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 36.03  E-value: 1.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1150150960   1 MWLMFMMSIMTIILCSIIMLLASLLSKKSIhNREKNSPFECGFDPKSPARLPFSLRFFLIAVVFLIFDVEIALLLpIVII 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKF-DLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL-GLLV 78

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1150150960  81 SQWSNIMSwsliTIFFLMILLVGLFHEWNQGALEW 115
Cdd:MTH00092   79 SDFSSLIS----FFMLMIFIFFGFYMEWWYGKLIW 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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