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Conserved domains on  [gi|1148848707|ref|WP_077571103|]
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flagellar motor protein MotB [Paenibacillus ihbetae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
motB super family cl35607
flagellar motor protein MotB; Reviewed
 1-254 1.33e-100

flagellar motor protein MotB; Reviewed


The actual alignment was detected with superfamily member PRK07734:

Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 294.34  E-value: 1.33e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707   1 MSKKTRHEPHEEHADESWLLPYADLLTLLLALFLVLYAMSATDARKFQEMSEAFSIALTGGTGVLDYSKTQPSDDPPDLK 80
Cdd:PRK07734    2 KNRKKKKKKHEEHIDESWLIPYADLLTLLLALFIVLFAMSSIDAAKFKQMAVAFNSEFAGGTGVKDFLSDQKPEDEKELS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  81 DHKATAPTTPASTPDQRRAElmrQEQEELEKLKKQIDNYIKNNGLTSELSTKLNHSQLVLTIRDNALFPSGEAVVKPEAR 160
Cdd:PRK07734   82 ASSLEAEQAKKKEEAEAKKK---KEMEELKAVQKKIDQYIKEKQLSSSLQTKLTEEGLLITILDNILFDSGKADVRLEDL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 161 KLAEAISQMLQKFPDYEIIVSGHTDNVPISNSKYPSNWDLSSDRALQFMKILLANSSLDPKRFMPIGYGEYHPIADNATA 240
Cdd:PRK07734  159 PLAKEISNLLVSNPPRNITISGHTDNVPIANAQFASNWELSVMRAVNFMQVLLENKELDPEKFSAKGYGEYKPIASNDTA 238

                         250
                  ....*....|....
gi 1148848707 241 AGRAKNRRVEVSII 254
Cdd:PRK07734  239 EGRAKNRRVEVLIL 252
 
Name Accession Description Interval E-value
motB PRK07734
flagellar motor protein MotB; Reviewed
 1-254 1.33e-100

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 294.34  E-value: 1.33e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707   1 MSKKTRHEPHEEHADESWLLPYADLLTLLLALFLVLYAMSATDARKFQEMSEAFSIALTGGTGVLDYSKTQPSDDPPDLK 80
Cdd:PRK07734    2 KNRKKKKKKHEEHIDESWLIPYADLLTLLLALFIVLFAMSSIDAAKFKQMAVAFNSEFAGGTGVKDFLSDQKPEDEKELS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  81 DHKATAPTTPASTPDQRRAElmrQEQEELEKLKKQIDNYIKNNGLTSELSTKLNHSQLVLTIRDNALFPSGEAVVKPEAR 160
Cdd:PRK07734   82 ASSLEAEQAKKKEEAEAKKK---KEMEELKAVQKKIDQYIKEKQLSSSLQTKLTEEGLLITILDNILFDSGKADVRLEDL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 161 KLAEAISQMLQKFPDYEIIVSGHTDNVPISNSKYPSNWDLSSDRALQFMKILLANSSLDPKRFMPIGYGEYHPIADNATA 240
Cdd:PRK07734  159 PLAKEISNLLVSNPPRNITISGHTDNVPIANAQFASNWELSVMRAVNFMQVLLENKELDPEKFSAKGYGEYKPIASNDTA 238

                         250
                  ....*....|....
gi 1148848707 241 AGRAKNRRVEVSII 254
Cdd:PRK07734  239 EGRAKNRRVEVLIL 252
MotB COG1360
Flagellar motor protein MotB [Cell motility];
119-261 6.41e-54

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 172.34  E-value: 6.41e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 119 YIKNNGLTSELSTKLNHSQLVLTIRDNALFPSGEAVVKPEARKLAEAISQMLQKFPdYEIIVSGHTDNVPISNSKYPSNW 198
Cdd:COG1360    34 ALEENLLSGQVEVRITEEGLVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVP-NRIRVEGHTDNVPISTARFPSNW 112

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1148848707 199 DLSSDRALQFMKILLANsSLDPKRFMPIGYGEYHPIADNATAAGRAKNRRVEVSIIRKYQDSA 261
Cdd:COG1360   113 ELSAARAAAVVRYLIEG-GVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILRRAAEEA 174
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 147-253 3.82e-35

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 121.89  E-value: 3.82e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 147 LFPSGEAVVKPEARKLAEAISQMLQKFPDYEIIVSGHTDNVpisnSKYPSNWDLSSDRALQFMKILLANSsLDPKRFMPI 226
Cdd:cd07185     5 YFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSR----GSDAYNQELSERRAEAVADYLVSKG-VDASRITAV 79

                          90       100
                  ....*....|....*....|....*..
gi 1148848707 227 GYGEYHPIADNATAAGRAKNRRVEVSI 253
Cdd:cd07185    80 GYGESRPIASNDTEEGRAKNRRVEIVI 106
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 139-253 9.21e-35

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 122.03  E-value: 9.21e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 139 VLTIRDNALFPSGEAVVKPEARKLAEAISQMLQKFPdYEIIVSGHTDNVPISNSKYPSNWDLSSDRALQFMKILLAnsSL 218
Cdd:TIGR03350  25 VVRLRGDELFASGSAEVRAEFEPLLLRIAKALAAVP-GRITVVGHTDNVPIRTARFPSNWHLSEARAKAVADVLAQ--AG 101

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1148848707 219 DPK-RFMPIGYGEYHPIADNATAAGRAKNRRVEVSI 253
Cdd:TIGR03350 102 GPAgRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 148-246 2.29e-16

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 72.39  E-value: 2.29e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 148 FPSGEAVVKPEARKLAEAISQMLQKFPDYEII-VSGHTDNVPISnskyPSNWDLSSDRALQFMKILLaNSSLDPKRFMPI 226
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNTItIEGHTDTVGSA----AYNWELSQRRAEAVRRYLV-NFGVPPSRISVV 75

                          90       100
                  ....*....|....*....|
gi 1148848707 227 GYGEYHPIADNATAAGRAKN 246
Cdd:pfam00691  76 GYGATKPITDNKTPEGRARN 95
 
Name Accession Description Interval E-value
motB PRK07734
flagellar motor protein MotB; Reviewed
 1-254 1.33e-100

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 294.34  E-value: 1.33e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707   1 MSKKTRHEPHEEHADESWLLPYADLLTLLLALFLVLYAMSATDARKFQEMSEAFSIALTGGTGVLDYSKTQPSDDPPDLK 80
Cdd:PRK07734    2 KNRKKKKKKHEEHIDESWLIPYADLLTLLLALFIVLFAMSSIDAAKFKQMAVAFNSEFAGGTGVKDFLSDQKPEDEKELS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  81 DHKATAPTTPASTPDQRRAElmrQEQEELEKLKKQIDNYIKNNGLTSELSTKLNHSQLVLTIRDNALFPSGEAVVKPEAR 160
Cdd:PRK07734   82 ASSLEAEQAKKKEEAEAKKK---KEMEELKAVQKKIDQYIKEKQLSSSLQTKLTEEGLLITILDNILFDSGKADVRLEDL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 161 KLAEAISQMLQKFPDYEIIVSGHTDNVPISNSKYPSNWDLSSDRALQFMKILLANSSLDPKRFMPIGYGEYHPIADNATA 240
Cdd:PRK07734  159 PLAKEISNLLVSNPPRNITISGHTDNVPIANAQFASNWELSVMRAVNFMQVLLENKELDPEKFSAKGYGEYKPIASNDTA 238

                         250
                  ....*....|....
gi 1148848707 241 AGRAKNRRVEVSII 254
Cdd:PRK07734  239 EGRAKNRRVEVLIL 252
MotB COG1360
Flagellar motor protein MotB [Cell motility];
119-261 6.41e-54

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 172.34  E-value: 6.41e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 119 YIKNNGLTSELSTKLNHSQLVLTIRDNALFPSGEAVVKPEARKLAEAISQMLQKFPdYEIIVSGHTDNVPISNSKYPSNW 198
Cdd:COG1360    34 ALEENLLSGQVEVRITEEGLVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVP-NRIRVEGHTDNVPISTARFPSNW 112

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1148848707 199 DLSSDRALQFMKILLANsSLDPKRFMPIGYGEYHPIADNATAAGRAKNRRVEVSIIRKYQDSA 261
Cdd:COG1360   113 ELSAARAAAVVRYLIEG-GVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILRRAAEEA 174
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 1-269 3.78e-52

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 171.35  E-value: 3.78e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707   1 MSKKTRHEPHEEHadESWLLPYADLLTLLLALFLVLYAMSATDARKFQEMSEAFSIALTGGTGVLdySKTQPSDDPPdlk 80
Cdd:PRK09038    2 MRRRKHHEEHENH--ERWLVSYADFITLLFAFFVVMYAISSVNEGKYKVLSEALTGAFNGPSRSM--KPIPIGKEQP--- 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  81 dhkatAPTTPASTPDQRRAELMRQEQEELEKLKKQIDNYIKnnGLTSELSTKLNHSQL--VLTIRDNALFPSGEAVVKPE 158
Cdd:PRK09038   75 -----KTTQPARPLVIDSEQPDARAQDQLKTIADDLRKALG--PLIESGQVTVRRNELwiEIEINSSLLFGSGDAMLSDQ 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 159 ARKLAEAISQMLQKFPdYEIIVSGHTDNVPISNSKYPSNWDLSSDRALQFMKiLLANSSLDPKRFMPIGYGEYHPIADNA 238
Cdd:PRK09038  148 AFAILEKVAEVLKPAP-NPIHVEGFTDNVPIATAQFPSNWELSAARAASVVR-LLADDGVAPSRLAAVGYGEFQPVADND 225

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1148848707 239 TAAGRAKNRRVEVSIIRKYQDSATFTSVDEA 269
Cdd:PRK09038  226 TAEGRARNRRVVLVILRNLDVRRSLTPVGSA 256
PRK06925 PRK06925
flagellar motor protein MotB;
6-253 3.09e-43

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 146.83  E-value: 3.09e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707   6 RHEPHEEHADESWLLPYADLLTLLLALFLVLYAMSATDARKFQEMSEAFSialtgGTGVLDYSKTQPSDDPPDLKDHKAt 85
Cdd:PRK06925    3 RRKRQQSKGSPKWMVTFSDLITLILVFFILLFSMSQIDAQKFKAAVESFQ-----QRGSLGFLPSAIEFENPAESSEDE- 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  86 apttpastpdqrraelmRQEQEELEKLKKQIDNYIKNNGLTSELSTKLNHSQLVLTIRDNALFPSGEAVVKPEARKLAEA 165
Cdd:PRK06925   77 -----------------EKQEDQLDELLKKVNEYIEENELKSVITAKRDERGVVLVLQEAVLFETGEADILKQAEPFLHK 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 166 ISQMLQKFPDyEIIVSGHTDNVPISNSKYPSNWDLSSDRALQFMKILLANSSLDPKRFMPIGYGEYHPIADNATAAGRAK 245
Cdd:PRK06925  140 IGVLLSTIPN-DIKVEGHTDSRPISTYRYPSNWELSAARASSVIRYFTSKEKLDSSRFIAVGYADTKPVVPNTTEENMQE 218


                  ....*...
gi 1148848707 246 NRRVEVSI 253
Cdd:PRK06925  219 NRRVEIVI 226
motB PRK08944
flagellar motor protein MotB; Reviewed
 37-253 2.82e-39

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 138.60  E-value: 2.82e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  37 YAMSATDARKF----QEMSEAFSI-------ALTGGTGVL--DYSKTQPSDDPPDLKDHKA---TAPT------------ 88
Cdd:PRK08944   36 LSFSEMDVLKFkqiaGSMKFAFGVqnkievkDIPKGTSIIaqEFRPGRPEPTPIEVIMQQTidmTQQTlefqagesdsag 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  89 -TPASTPDQRRAELMRQEQEELEKLKKQIDNYIKnngltsELSTKLNH-------------SQLVLTIRDNALFPSGEAV 154
Cdd:PRK08944  116 gTQQQRGKQRGGEASAEVKAEKAAAQEQIEDLVK------KLAQQLEKeiedgaieieslgQQIIIRIREKGSFPSGSAF 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 155 VKPEARKLAEAISQMLQKFPDyEIIVSGHTDNVPISNSKYPSNWDLSSDRALQFMKILLANSSLDPKRFMPIGYGEYHPI 234
Cdd:PRK08944  190 LQPKFKPVVRKIGELLKDVPG-IITVSGHTDNVPISSELYRSNWDLSSARAVAVAHELLKVKGFDPQRLKVVGMADTQPL 268

                         250
                  ....*....|....*....
gi 1148848707 235 ADNATAAGRAKNRRVEVSI 253
Cdd:PRK08944  269 VPNDTAENRARNRRVEIII 287
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 147-253 3.82e-35

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 121.89  E-value: 3.82e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 147 LFPSGEAVVKPEARKLAEAISQMLQKFPDYEIIVSGHTDNVpisnSKYPSNWDLSSDRALQFMKILLANSsLDPKRFMPI 226
Cdd:cd07185     5 YFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSR----GSDAYNQELSERRAEAVADYLVSKG-VDASRITAV 79

                          90       100
                  ....*....|....*....|....*..
gi 1148848707 227 GYGEYHPIADNATAAGRAKNRRVEVSI 253
Cdd:cd07185    80 GYGESRPIASNDTEEGRAKNRRVEIVI 106
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 139-253 9.21e-35

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 122.03  E-value: 9.21e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 139 VLTIRDNALFPSGEAVVKPEARKLAEAISQMLQKFPdYEIIVSGHTDNVPISNSKYPSNWDLSSDRALQFMKILLAnsSL 218
Cdd:TIGR03350  25 VVRLRGDELFASGSAEVRAEFEPLLLRIAKALAAVP-GRITVVGHTDNVPIRTARFPSNWHLSEARAKAVADVLAQ--AG 101

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1148848707 219 DPK-RFMPIGYGEYHPIADNATAAGRAKNRRVEVSI 253
Cdd:TIGR03350 102 GPAgRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 18-253 2.26e-29

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 110.92  E-value: 2.26e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  18 WLLPYADLLTLLLALFLVLYAMSATDARKFQEMSEAFSIAltggtgvldysktqpsdDPPDLKDHKATAPTTPASTPDQR 97
Cdd:PRK06742   12 WMTTFTDLTMLLLTFFVLLVATSKQDAVKLSKMLEKFSDT-----------------EQVDAKVMENTIPDISHEKNDEK 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  98 RAELMRqeqeeLEKLKKQIDNYIKNNGLtSELSTKLNHSQLVLTIRDNALFPSGEAVVKPEARKLAEAISQMLQKFPDyE 177
Cdd:PRK06742   75 MISKKR-----MDELYKKLKAYVDNNGI-SQVNVYREDTGVSVVIVDNLIFDTGDANVKPEAKEIISQLVGFFQSVPN-P 147

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1148848707 178 IIVSGHTDNVPISNSKYPSNWDLSSDRALQFMKILLANSSLDPKRFMPIGYGEYHPIADNATAAGRAKNRRVEVSI 253
Cdd:PRK06742  148 IVVEGHTDSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVIYI 223
motB PRK08457
flagellar motor protein MotB; Reviewed
 1-266 6.49e-29

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 110.19  E-value: 6.49e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707   1 MSKKtrHEPHEEHADESWLLPYADLLTLLLALFLVLYAMSATDARKFQEMSEAFsialtggTGVLDYSKTQPSDDPPDLK 80
Cdd:PRK08457    1 MAKK--KKPTECPAGEKWAVPYADFLSLLLALFIALYAISAVNKAKVEALKTEF-------IKIFDYTAKPEVKQPVKVI 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  81 DhKATAPTTPASTPDQRRAELMRQEQEELEKLKK------QIDNyiknngltselstklnhsQLVLTIRDNALFPSGEA- 153
Cdd:PRK08457   72 P-PDSGDAEEEMDELKSLKASQNTQQETIERRKGeggaldQIDN------------------GIALKLPSKLLFENGSAe 132

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 154 VVKPEARKLAEAISQMLQKFPDY-EIIVSGHTDNVPISNSKYPSNWDLSSDRALQFMKILLANsSLDPKRFMPIGYGEYH 232
Cdd:PRK08457  133 IINADMMDYLKRIAKIITKLPKQvKINVRGYTDNSPLNKSRYKDHYELAAARAYNVMKVLIQY-GINPNRLSFSSYGSNN 211

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1148848707 233 PIADNATAAGRAKNRRVEVSIIRKYQDSATFTSV 266
Cdd:PRK08457  212 PIAPNDSLENRLKNNRVEIFFKVDANDTSTQKSI 245
PRK07033 PRK07033
DotU family type VI secretion system protein;
139-253 2.38e-28

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 112.07  E-value: 2.38e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 139 VLTIRDNALFPSGEAVVKPEARKLAEAISQMLQKFPDyEIIVSGHTDNVPISNSKYPSNWDLSSDRAlQFMKILLANSSL 218
Cdd:PRK07033  309 VVTLRGDGLFASASTSVRDRYQPVLARVADALNQVKG-NVLVTGYSDNVPIRTARFPSNWELSQARA-QAVRALLAARLG 386

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1148848707 219 DPKRFMPIGYGEYHPIADNATAAGRAKNRRVEVSI 253
Cdd:PRK07033  387 QPERVTAEGRGDSDPVAPNDSAENRARNRRVEITL 421
PRK08126 PRK08126
hypothetical protein; Provisional
 135-255 4.89e-28

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 111.32  E-value: 4.89e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 135 HSqlVLTIRDNALFPSGEAVVKPEARKLAEAISQMLQKFPDyEIIVSGHTDNVPISNSKYPSNWDLSSDRALQFMKILLA 214
Cdd:PRK08126  316 HS--SVVFRGDAMFVPGQATVNPAMGPLIAKIAREIARVGG-KVTVTGHTDNQPIRSAQFASNLVLSEKRAAQVAQMLQS 392

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1148848707 215 nSSLDPKRFMPIGYGEYHPIADNATAAGRAKNRRVEVSIIR 255
Cdd:PRK08126  393 -AGVPASRLEAVGKGDAQPVADNRTPQGRAQNRRVEITVAE 432
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 55-256 1.55e-27

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 107.56  E-value: 1.55e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  55 SIALTGGTGVLDYSKTQPSDDPPDLKDHKATAPTTPASTPDQRRAELMRQEQEELEKLKKQIDNYIKNNGLTSELSTKLN 134
Cdd:COG2885    98 ALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAALDAAAKAEAAAAAAALLP 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 135 HSQLVLTIRDNALFPSGEAVVKPEARKLAEAISQMLQKFPDYEIIVSGHTDNVpiSNSKYpsNWDLSSDRALQFMKILLA 214
Cdd:COG2885   178 AAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSR--GSDAY--NLALSERRAEAVKDYLVS 253

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1148848707 215 NSsLDPKRFMPIGYGEYHPIADNATAAGRAKNRRVEVSIIRK 256
Cdd:COG2885   254 KG-IPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
PRK09039 PRK09039
peptidoglycan -binding protein;
147-250 1.72e-27

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 108.51  E-value: 1.72e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 147 LFPSGEAVVKPEAR----KLAEAISQMLQKFP---DYEIIVSGHTDNVPISNS-KYPSNWDLSSDRALQFMKILLANSsL 218
Cdd:PRK09039  227 LFPTGSAELNPEGQaeiaKLAAALIELAKEIPpeiNWVLRVDGHTDNVPLSGTgRFRDNWELSSARAISVVKFLIALG-V 305

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1148848707 219 DPKRFMPIGYGEYHPIADNATAAGRAKNRRVE 250
Cdd:PRK09039  306 PADRLAAAGFGEFQPLDPGDTPEARARNRRIE 337
motB PRK06667
flagellar motor protein MotB; Validated
 1-254 1.84e-23

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 95.63  E-value: 1.84e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707   1 MSKKTRHEPHEEHADESWLLPYADLLTLLLALFLVLYAMSATDARKFQEMSEAFSialtgGTGVLDYSKTQPSDDPPDLK 80
Cdd:PRK06667    1 MAMRKKKCPKCIQGAPEYMLTYGDMVTLLLCFFVMLFTTNDVDENVLQIISASFT-----GTGFFKGGQTLSKGKLSELG 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  81 DHKATAPTTpastpdqrraELMRQEQEELEKLKKQIDNYIKNNgltsELSTKLNHSQLVLTIRDNALFPSGEAVVK-PEA 159
Cdd:PRK06667   76 NSIMSLPST----------EKGKQLSQAKKNASSLFKPEIQSN----KVAVTEDERGLVISLASDAFFYPGSAEVKlEEN 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 160 RKLAEAISQMLQKFPD--YEIIVSGHTDNVPIS-NSKYPSNWDLSSDRALQFMKILLANSSLDPKRFMPIGYGEYHPIAD 236
Cdd:PRK06667  142 RETLQKIASFIGFLDLagRNFRIEGHTDNVDVNpEGPWKSNWELSGARAVNMLEYILNYGDQSESWFQVSGFAGSRPLAT 221

                         250
                  ....*....|....*...
gi 1148848707 237 NATAAGRAKNRRVEVSII 254
Cdd:PRK06667  222 EDTPEGRAYNRRIDIVIL 239
PRK09040 PRK09040
hypothetical protein; Provisional
 142-252 6.11e-19

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 82.76  E-value: 6.11e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 142 IRDNALFPSGEAVVKPEARKLAEAISQMLQKF---PDYEIIVSGHTDNVPI--SNSKYPSNWDLSSDRALQFMKILLANS 216
Cdd:PRK09040   86 ISGSVLFALNSDQLQPEGRELLKSLAGPLAAYlraRDEILMVSGFTDDQPVraGNRRFADNWELSAQRALTVTRALIDAG 165

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1148848707 217 sLDPKRFMPIGYGEYHPIADNATAAGRAKNRRVEVS 252
Cdd:PRK09040  166 -VPASSVFAAAFGSEQPVASNADDEGRAKNRRVEIA 200
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 148-246 2.29e-16

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 72.39  E-value: 2.29e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 148 FPSGEAVVKPEARKLAEAISQMLQKFPDYEII-VSGHTDNVPISnskyPSNWDLSSDRALQFMKILLaNSSLDPKRFMPI 226
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKNTItIEGHTDTVGSA----AYNWELSQRRAEAVRRYLV-NFGVPPSRISVV 75

                          90       100
                  ....*....|....*....|
gi 1148848707 227 GYGEYHPIADNATAAGRAKN 246
Cdd:pfam00691  76 GYGATKPITDNKTPEGRARN 95
motB PRK09041
motility protein MotB;
37-205 5.57e-15

motility protein MotB;


Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 73.44  E-value: 5.57e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  37 YAMSATDARKFQEMSEAF----SIALTGGTGVldysktqpSDDP-------PDLKDHKATAPTTPAsTPDQRRAELMRQE 105
Cdd:PRK09041   45 WLLSSSTPEQLIGIAEYFrtplKVALTGGDRS--------SDSTspipgggDDITQQDGEVNKQPN-IAELAQGEKERRE 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 106 QEELEKLKKQIDNYIKNNGLTSELStklnhSQLVLTIRDNAL------------FPSGEAVVKPEARKLAEAISQMLQKF 173
Cdd:PRK09041  116 QERLEKLKQELDQAIESNPKLRQFK-----PQLLIDLTQEGLriqivdsqnrpmFATGSAEVEPYMRDILREIAPVLNDV 190

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1148848707 174 PDyEIIVSGHTDNVPISNS-KYPSNWDLSSDRA 205
Cdd:PRK09041  191 PN-RISLSGHTDATPYANGeKGYSNWELSADRA 222
motB PRK12799
flagellar motor protein MotB; Reviewed
 1-256 1.49e-13

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 69.74  E-value: 1.49e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707   1 MSKKTRHEPHEEHADESWLLPYADLLTLLLALFLVLYAMSATDARKFQEMSEAF----SIALTGGTGVLDYSKTQP--SD 74
Cdd:PRK12799   10 LVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEYFrtplKVALTSGDKSSSSTSPIPggGD 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  75 DPPDlkdhkataptTPASTPDQRRAELMRQEQEELEKLKKQIDNYIKNN----GLTSELSTKLNHSQLVLTIRDN---AL 147
Cdd:PRK12799   90 DPTQ----------QVGEVRKQINSEESRQEIHRLNKLREKLDQLIESDprlkALRPHLLINMMDEGLRIQIIDSqnrPM 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 148 FPSGEAVVKPEARKLAEAISQMLQKFPDyEIIVSGHTDNVP-ISNSKYPSNWDLSSDRALQFMKILLANSSLDPKRFMPI 226
Cdd:PRK12799  160 FKMGSAQVEPYMRDILRAIAPILNDIPN-KLSLSGHTDDLPyARGERGYSNWELSADRANASRRELLAGGLDEGKILRVV 238

                         250       260       270
                  ....*....|....*....|....*....|
gi 1148848707 227 GYGEYHPIADNATAagRAKNRRVEVSIIRK 256
Cdd:PRK12799  239 GMASTMRLKEQASD--DPVNRRISILVLNK 266
PRK06778 PRK06778
hypothetical protein; Validated
 10-256 2.23e-13

hypothetical protein; Validated


Pssm-ID: 235860 [Multi-domain]  Cd Length: 289  Bit Score: 68.42  E-value: 2.23e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  10 HEEHADESWLLPYADLLTLLLALFLVLYAMSATDARKFQEMSEAF---SIALTGGTGVLDysKTQPSDDPPDLKDHKATA 86
Cdd:PRK06778   14 HHVRHSGAWKVAFADFTLAMMALFMVLWIVNSVSKSERESIIAALhgqSIFNGGGLSPLN--KISPSHPPKPATVAVPEE 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  87 PTTPASTPDQRRAELMRQEQEELEKLKKQIDNYIKNNGLTSELSTKLNHSQLVLTIRDNA---LFPSGEAVVKPEARKLA 163
Cdd:PRK06778   92 TEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQnrnMFERGSAQIMPFFKTLL 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 164 EAISQMLQKFpDYEIIVSGHTDNVPISNSKYpSNWDLSSDRALQFMKIlLANSSLDPKRFMPIGygeyhPIAD----NAT 239
Cdd:PRK06778  172 VELAPVFDSL-DNKIIITGHTDAMAYKNNIY-NNWNLSGDRALSARRV-LEEAGMPEDKVMQVS-----AMADqmllDAK 243

                         250
                  ....*....|....*..
gi 1148848707 240 AAGRAKNRRVEVSIIRK 256
Cdd:PRK06778  244 NPQSAGNRRIEIMVLTK 260
PRK10510 PRK10510
OmpA family lipoprotein;
129-254 7.56e-13

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 66.05  E-value: 7.56e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 129 LSTKLNHSQLVLTIRDNALFPSGEAVVKPEARKLAEAISQMLQKFPDYEIIVSGHTDnvpiSNSKYPSNWDLSSDRALQF 208
Cdd:PRK10510   97 VSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTD----STGSHDLNMRLSQQRADSV 172

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1148848707 209 MKILLANSsLDPKRFMPIGYGEYHPIADNATAAGRAKNRRVEVSII 254
Cdd:PRK10510  173 ASALITQG-VDASRIRTQGMGPANPIASNSTAEGKAQNRRVEITLS 217
motB PRK05996
MotB family protein;
68-253 2.55e-11

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 63.18  E-value: 2.55e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  68 SKTQPSDDPPDLKDHKATAPTTPASTPDQRRAELMRQEQEELEKLKKQIDNYIKNNGLTSELSTKLNHSQ----LVLTIR 143
Cdd:PRK05996  231 QPKKAATEEELIADAKKAATGEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGKLAEGVTVTPveggLLISLT 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 144 DNA---LFPSGEAVVKPEARKLAEAISQMLQKFPDyEIIVSGHTDNVPISNSKYpSNWDLSSDRAlQFMKILLANSSLDP 220
Cdd:PRK05996  311 DQVdygMFAIGSAVPRAELVLAMEKIGQLLAERPG-AVIIRGHTDARPFKSATY-DNWRLSTARA-QSAYYMLVRGGLDE 387

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1148848707 221 KRFMPI-GYGEYHPIADNATAAgrAKNRRVEVSI 253
Cdd:PRK05996  388 KRIEQVeGFADRRPKLPNDPNA--AANRRIEILI 419
PRK07034 PRK07034
hypothetical protein; Provisional
 94-251 4.36e-10

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 59.80  E-value: 4.36e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707  94 PDQRRAELMrqeqeelEKLKKQIDNyIKNNGLtseLSTKLNHSQLVLTIRDNALFPSGEAVVKPE--ARKLAEAISQMLQ 171
Cdd:PRK07034  355 PEPRKINIM-------ETLPNPLSN-ILNEGW---LEVRKDPRGWLLIFTSDGAFRTGEATLSEEfiNKKNIERLGLALA 423

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 172 KFP-DYEIIvsGHTDNVPISNSKYPSNWDLSSDRALQFMKILLANSSLDP---KRFMPIGYGEYHPIADNATAAGRAKNR 247
Cdd:PRK07034  424 PWPgDIEVI--GHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINEthqREISAIGRGESDPLADNATEEGRKRNR 501


                  ....
gi 1148848707 248 RVEV 251
Cdd:PRK07034  502 RVDI 505
PRK09967 PRK09967
OmpA family protein;
140-253 1.63e-08

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 52.67  E-value: 1.63e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 140 LTIRDNALFPSGEAVVKPEARKLAEAISQMLQKFPDYEIIVSGHTDNVpiSNSKYpsNWDLSSDRALQFMKILLANSSLD 219
Cdd:PRK09967   48 LGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNY--GEDSY--NEGLSLKRANVVADAWAMGGQIP 123

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1148848707 220 PKRFMPIGYGEYHPIADNATAAGRAKNRRVEVSI 253
Cdd:PRK09967  124 RSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVI 157
MotB_plug pfam13677
Membrane MotB of proton-channel complex MotA/MotB; This is the MotB member of the E.coli MotA ...
 3-58 1.91e-08

Membrane MotB of proton-channel complex MotA/MotB; This is the MotB member of the E.coli MotA/MotB proton-channel complex that forms the stator of the bacterial membrane flagellar motor. Key residues act as a plug to prevent premature proton flow. The plug is in the periplasm just C-terminal to the MotB TM, consisting of an amphipathic alpha helix flanked by Pro-52 and Pro-65, eg in Swiss:D3V2T1. In addition to the Pro residues, Ile-58, Tyr-61, and Phe 62 are also essential for plug function.


Pssm-ID: 463955 [Multi-domain]  Cd Length: 57  Bit Score: 49.83  E-value: 1.91e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1148848707   3 KKTRHEPHEEHADESWLLPYADlltlllalflvlYAMSATDARKFQEMSEAFSIAL 58
Cdd:pfam13677   2 KKKKEPEHEGGHGERWLVTYADlmtlllaffvllYSMSSVDEKKFQQIAESFQDAF 57
PRK14693 PRK14693
hypothetical protein; Provisional
 125-251 3.79e-07

hypothetical protein; Provisional


Pssm-ID: 173156 [Multi-domain]  Cd Length: 552  Bit Score: 50.92  E-value: 3.79e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1148848707 125 LTSELSTKLNHSQ-LVLTIRDNALFPSGEAVVKPEARKLAEAISQMLQKFP-DYEIIvsGHTDNVPISNSKYPSNWDLSS 202
Cdd:PRK14693  352 LTEGWLTAYKHPQgWLLVFKSDGAFDVGKANVRADFMHNIERLGLAFAPWPgDLEVI--GHTDSRPIRTSEFPDNQALSE 429

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1148848707 203 DRAL----QFMKILLANSSLDPKRFMP-----IGYGEYHPIADNATAAGRAKNRRVEV 251
Cdd:PRK14693  430 ARARnvadELRKTALPGGARAPENAVQrnieySGRGDAQPIDTAKTAAAYERNRRVDV 487
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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