|
Name |
Accession |
Description |
Interval |
E-value |
| rps4 |
CHL00113 |
ribosomal protein S4; Reviewed |
1-205 |
3.78e-95 |
|
ribosomal protein S4; Reviewed
Pssm-ID: 177038 [Multi-domain] Cd Length: 201 Bit Score: 275.56 E-value: 3.78e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040 1 MSRYRGPRLRIVRRIGKLPSLTNKTSKKRKSPGQPAtsfkRKKKISKYNIRLKEKQKLRFNYGITERQLLNYVKKSRKKK 80
Cdd:CHL00113 1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQS----RSGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040 81 GSSGRFLLTFLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQKNIESKE 160
Cdd:CHL00113 77 GSTGQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSP 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 11467040 161 LLLIPPHLSLNKKNLEAKIIGLINRKAISLIVNELLVIEFYSRKV 205
Cdd:CHL00113 157 REELPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
|
|
| RpsD |
COG0522 |
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ... |
1-203 |
7.82e-67 |
|
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit
Pssm-ID: 440288 [Multi-domain] Cd Length: 204 Bit Score: 203.77 E-value: 7.82e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040 1 MSRYRGPRLRIVRRIGKlpSLTNKTSKKRKS------PGQPAtsfKRKKKISKYNIRLKEKQKLRFNYGITERQLLNYVK 74
Cdd:COG0522 1 MARYTGPKCKLCRREGV--KLFLKGERKCALerrpypPGQHG---QRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040 75 KSRKKKGSSGRFLLTFLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQK 154
Cdd:COG0522 76 EAARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKE 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 11467040 155 NIESKELLLIPPHLSLNKKNLEAKIIGLINRKAISLIVNELLVIEFYSR 203
Cdd:COG0522 156 ALESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
|
|
| rpsD_bact |
TIGR01017 |
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ... |
3-203 |
8.33e-66 |
|
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pssm-ID: 200066 [Multi-domain] Cd Length: 200 Bit Score: 200.99 E-value: 8.33e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040 3 RYRGPRLRIVRRIG-KLPSLTNKTSKKRK-SPGQPAtsfKRKKKISKYNIRLKEKQKLRFNYGITERQLLNYVKKSRKKK 80
Cdd:TIGR01017 1 RYTGPKFKLSRRLGvNLFGKSRKLLLKRKyPPGQHG---QRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040 81 GSSGRFLLTFLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQKNIESKE 160
Cdd:TIGR01017 78 GNTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETNG 157
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 11467040 161 LLLIPPHLSLNKKNLEAKIIGLINRKAISLIVNELLVIEFYSR 203
Cdd:TIGR01017 158 QRNIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
|
|
| S4 |
cd00165 |
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ... |
93-155 |
1.76e-13 |
|
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Pssm-ID: 238095 [Multi-domain] Cd Length: 70 Bit Score: 62.65 E-value: 1.76e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 11467040 93 MRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQKN 155
Cdd:cd00165 1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYED 63
|
|
| S4 |
pfam01479 |
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ... |
93-140 |
6.30e-12 |
|
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.
Pssm-ID: 396182 [Multi-domain] Cd Length: 48 Bit Score: 57.89 E-value: 6.30e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 11467040 93 MRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSII 140
Cdd:pfam01479 1 RRLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
|
|
| S4 |
smart00363 |
S4 RNA-binding domain; |
93-148 |
9.40e-11 |
|
S4 RNA-binding domain;
Pssm-ID: 214638 [Multi-domain] Cd Length: 60 Bit Score: 55.29 E-value: 9.40e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 11467040 93 MRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVS 148
Cdd:smart00363 1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| rps4 |
CHL00113 |
ribosomal protein S4; Reviewed |
1-205 |
3.78e-95 |
|
ribosomal protein S4; Reviewed
Pssm-ID: 177038 [Multi-domain] Cd Length: 201 Bit Score: 275.56 E-value: 3.78e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040 1 MSRYRGPRLRIVRRIGKLPSLTNKTSKKRKSPGQPAtsfkRKKKISKYNIRLKEKQKLRFNYGITERQLLNYVKKSRKKK 80
Cdd:CHL00113 1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQS----RSGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040 81 GSSGRFLLTFLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQKNIESKE 160
Cdd:CHL00113 77 GSTGQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSP 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 11467040 161 LLLIPPHLSLNKKNLEAKIIGLINRKAISLIVNELLVIEFYSRKV 205
Cdd:CHL00113 157 REELPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
|
|
| rpsD |
PRK05327 |
30S ribosomal protein S4; Validated |
1-203 |
2.00e-70 |
|
30S ribosomal protein S4; Validated
Pssm-ID: 235411 [Multi-domain] Cd Length: 203 Bit Score: 212.66 E-value: 2.00e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040 1 MSRYRGPRLRIVRRIG-KLPSLTNKTSKKRKSPGQPATSfKRKKKISKYNIRLKEKQKLRFNYGITERQLLNYVKKSRKK 79
Cdd:PRK05327 1 MARYTGPKCKLSRRLGvDLFKSGKRCLKRKYPPGQHGQR-RRKPKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEAARR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040 80 KGSSGRFLLTFLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSII--KPKKSTVSenVIQKNIE 157
Cdd:PRK05327 80 KGNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIevREKSKKLP--RIKEALE 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 11467040 158 SKELLLIPPHLSLNKKNLEAKIIGLINRKAISLIVNELLVIEFYSR 203
Cdd:PRK05327 158 LAERRGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
|
|
| RpsD |
COG0522 |
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ... |
1-203 |
7.82e-67 |
|
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit
Pssm-ID: 440288 [Multi-domain] Cd Length: 204 Bit Score: 203.77 E-value: 7.82e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040 1 MSRYRGPRLRIVRRIGKlpSLTNKTSKKRKS------PGQPAtsfKRKKKISKYNIRLKEKQKLRFNYGITERQLLNYVK 74
Cdd:COG0522 1 MARYTGPKCKLCRREGV--KLFLKGERKCALerrpypPGQHG---QRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040 75 KSRKKKGSSGRFLLTFLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQK 154
Cdd:COG0522 76 EAARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKE 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 11467040 155 NIESKELLLIPPHLSLNKKNLEAKIIGLINRKAISLIVNELLVIEFYSR 203
Cdd:COG0522 156 ALESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
|
|
| rpsD_bact |
TIGR01017 |
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ... |
3-203 |
8.33e-66 |
|
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pssm-ID: 200066 [Multi-domain] Cd Length: 200 Bit Score: 200.99 E-value: 8.33e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040 3 RYRGPRLRIVRRIG-KLPSLTNKTSKKRK-SPGQPAtsfKRKKKISKYNIRLKEKQKLRFNYGITERQLLNYVKKSRKKK 80
Cdd:TIGR01017 1 RYTGPKFKLSRRLGvNLFGKSRKLLLKRKyPPGQHG---QRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040 81 GSSGRFLLTFLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQKNIESKE 160
Cdd:TIGR01017 78 GNTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETNG 157
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 11467040 161 LLLIPPHLSLNKKNLEAKIIGLINRKAISLIVNELLVIEFYSR 203
Cdd:TIGR01017 158 QRNIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
|
|
| S4 |
cd00165 |
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ... |
93-155 |
1.76e-13 |
|
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Pssm-ID: 238095 [Multi-domain] Cd Length: 70 Bit Score: 62.65 E-value: 1.76e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 11467040 93 MRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQKN 155
Cdd:cd00165 1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYED 63
|
|
| S4 |
pfam01479 |
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ... |
93-140 |
6.30e-12 |
|
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.
Pssm-ID: 396182 [Multi-domain] Cd Length: 48 Bit Score: 57.89 E-value: 6.30e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 11467040 93 MRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSII 140
Cdd:pfam01479 1 RRLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
|
|
| Ribosomal_S4 |
pfam00163 |
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ... |
3-73 |
7.16e-11 |
|
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.
Pssm-ID: 459696 Cd Length: 96 Bit Score: 56.40 E-value: 7.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040 3 RYRGPRLRIVRRIGKLPSLTNKTSKKRKS----------PGQPAtsfkRKKKISKYNIRLKEKQKLRFNYGITERQLLNY 72
Cdd:pfam00163 1 RYKGPEQKLLRRVGFKLWKKGRCHRELKVaqnrreypkyPGQHG----KIRKLSEYLLQLREKQKVRRKYGLLEKQLRKL 76
|
.
gi 11467040 73 V 73
Cdd:pfam00163 77 Y 77
|
|
| S4 |
smart00363 |
S4 RNA-binding domain; |
93-148 |
9.40e-11 |
|
S4 RNA-binding domain;
Pssm-ID: 214638 [Multi-domain] Cd Length: 60 Bit Score: 55.29 E-value: 9.40e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 11467040 93 MRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVS 148
Cdd:smart00363 1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
|
|
| rps4p |
PRK04051 |
30S ribosomal protein S4P; Validated |
90-133 |
1.31e-10 |
|
30S ribosomal protein S4P; Validated
Pssm-ID: 179730 [Multi-domain] Cd Length: 177 Bit Score: 57.96 E-value: 1.31e-10
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 11467040 90 FLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFI 133
Cdd:PRK04051 100 ILERRLQTIVYRKGLARTPKQARQFIVHGHIAVNGRRVTSPSYL 143
|
|
| uS4_arch |
TIGR01018 |
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein ... |
90-133 |
3.12e-10 |
|
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pssm-ID: 273397 [Multi-domain] Cd Length: 162 Bit Score: 56.66 E-value: 3.12e-10
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 11467040 90 FLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFI 133
Cdd:TIGR01018 101 FLERRLQTQVYKKGLARTIHQARQLIVHGHIAVNGRVVTSPSYI 144
|
|
| PLN00189 |
PLN00189 |
40S ribosomal protein S9; Provisional |
90-138 |
3.11e-06 |
|
40S ribosomal protein S9; Provisional
Pssm-ID: 177783 [Multi-domain] Cd Length: 194 Bit Score: 45.90 E-value: 3.11e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 11467040 90 FLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKS 138
Cdd:PLN00189 106 FLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGKQIVNVPSFMVRVDS 154
|
|
| PTZ00155 |
PTZ00155 |
40S ribosomal protein S9; Provisional |
90-133 |
5.36e-06 |
|
40S ribosomal protein S9; Provisional
Pssm-ID: 185484 [Multi-domain] Cd Length: 181 Bit Score: 45.07 E-value: 5.36e-06
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 11467040 90 FLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFI 133
Cdd:PTZ00155 104 LLERRLQTKVFKLGLAKSIHHARVLIRQRHIRVGKQIVDIPSFL 147
|
|
|