NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|11467040|ref|NP_041947|]
View 

ribosomal protein S4 (chloroplast) [Euglena gracilis]

Protein Classification

30S ribosomal protein S4( domain architecture ID 11414071)

30S ribosomal protein S4 binds directly to 16S rRNA and plays an important role in translational accuracy

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-205 3.78e-95

ribosomal protein S4; Reviewed


:

Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 275.56  E-value: 3.78e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040    1 MSRYRGPRLRIVRRIGKLPSLTNKTSKKRKSPGQPAtsfkRKKKISKYNIRLKEKQKLRFNYGITERQLLNYVKKSRKKK 80
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQS----RSGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAK 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040   81 GSSGRFLLTFLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQKNIESKE 160
Cdd:CHL00113  77 GSTGQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSP 156

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 11467040  161 LLLIPPHLSLNKKNLEAKIIGLINRKAISLIVNELLVIEFYSRKV 205
Cdd:CHL00113 157 REELPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
 
Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-205 3.78e-95

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 275.56  E-value: 3.78e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040    1 MSRYRGPRLRIVRRIGKLPSLTNKTSKKRKSPGQPAtsfkRKKKISKYNIRLKEKQKLRFNYGITERQLLNYVKKSRKKK 80
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQS----RSGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAK 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040   81 GSSGRFLLTFLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQKNIESKE 160
Cdd:CHL00113  77 GSTGQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSP 156

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 11467040  161 LLLIPPHLSLNKKNLEAKIIGLINRKAISLIVNELLVIEFYSRKV 205
Cdd:CHL00113 157 REELPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-203 7.82e-67

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 203.77  E-value: 7.82e-67
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040   1 MSRYRGPRLRIVRRIGKlpSLTNKTSKKRKS------PGQPAtsfKRKKKISKYNIRLKEKQKLRFNYGITERQLLNYVK 74
Cdd:COG0522   1 MARYTGPKCKLCRREGV--KLFLKGERKCALerrpypPGQHG---QRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFE 75

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040  75 KSRKKKGSSGRFLLTFLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQK 154
Cdd:COG0522  76 EAARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKE 155

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*....
gi 11467040 155 NIESKELLLIPPHLSLNKKNLEAKIIGLINRKAISLIVNELLVIEFYSR 203
Cdd:COG0522 156 ALESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-203 8.33e-66

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 200.99  E-value: 8.33e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040     3 RYRGPRLRIVRRIG-KLPSLTNKTSKKRK-SPGQPAtsfKRKKKISKYNIRLKEKQKLRFNYGITERQLLNYVKKSRKKK 80
Cdd:TIGR01017   1 RYTGPKFKLSRRLGvNLFGKSRKLLLKRKyPPGQHG---QRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLK 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040    81 GSSGRFLLTFLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQKNIESKE 160
Cdd:TIGR01017  78 GNTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETNG 157

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 11467040   161 LLLIPPHLSLNKKNLEAKIIGLINRKAISLIVNELLVIEFYSR 203
Cdd:TIGR01017 158 QRNIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 93-155 1.76e-13

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 62.65  E-value: 1.76e-13
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 11467040  93 MRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQKN 155
Cdd:cd00165   1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYED 63
S4 pfam01479
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ...
 93-140 6.30e-12

S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.


Pssm-ID: 396182 [Multi-domain]  Cd Length: 48  Bit Score: 57.89  E-value: 6.30e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 11467040    93 MRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSII 140
Cdd:pfam01479   1 RRLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
S4 smart00363
S4 RNA-binding domain;
93-148 9.40e-11

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 55.29  E-value: 9.40e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 11467040     93 MRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVS 148
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
 
Name Accession Description Interval E-value
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-205 3.78e-95

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 275.56  E-value: 3.78e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040    1 MSRYRGPRLRIVRRIGKLPSLTNKTSKKRKSPGQPAtsfkRKKKISKYNIRLKEKQKLRFNYGITERQLLNYVKKSRKKK 80
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGALPGLTSKTPRPGSDLRNQS----RSGKKSQYRIRLEEKQKLRFNYGLTERQLLKYVRIARKAK 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040   81 GSSGRFLLTFLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQKNIESKE 160
Cdd:CHL00113  77 GSTGQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQNNLESSP 156

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 11467040  161 LLLIPPHLSLNKKNLEAKIIGLINRKAISLIVNELLVIEFYSRKV 205
Cdd:CHL00113 157 REELPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYSRQT 201
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-203 2.00e-70

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 212.66  E-value: 2.00e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040    1 MSRYRGPRLRIVRRIG-KLPSLTNKTSKKRKSPGQPATSfKRKKKISKYNIRLKEKQKLRFNYGITERQLLNYVKKSRKK 79
Cdd:PRK05327   1 MARYTGPKCKLSRRLGvDLFKSGKRCLKRKYPPGQHGQR-RRKPKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKEAARR 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040   80 KGSSGRFLLTFLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSII--KPKKSTVSenVIQKNIE 157
Cdd:PRK05327  80 KGNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIevREKSKKLP--RIKEALE 157

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 11467040  158 SKELLLIPPHLSLNKKNLEAKIIGLINRKAISLIVNELLVIEFYSR 203
Cdd:PRK05327 158 LAERRGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-203 7.82e-67

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 203.77  E-value: 7.82e-67
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040   1 MSRYRGPRLRIVRRIGKlpSLTNKTSKKRKS------PGQPAtsfKRKKKISKYNIRLKEKQKLRFNYGITERQLLNYVK 74
Cdd:COG0522   1 MARYTGPKCKLCRREGV--KLFLKGERKCALerrpypPGQHG---QRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFE 75

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040  75 KSRKKKGSSGRFLLTFLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQK 154
Cdd:COG0522  76 EAARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKE 155

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*....
gi 11467040 155 NIESKELLLIPPHLSLNKKNLEAKIIGLINRKAISLIVNELLVIEFYSR 203
Cdd:COG0522 156 ALESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-203 8.33e-66

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 200.99  E-value: 8.33e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040     3 RYRGPRLRIVRRIG-KLPSLTNKTSKKRK-SPGQPAtsfKRKKKISKYNIRLKEKQKLRFNYGITERQLLNYVKKSRKKK 80
Cdd:TIGR01017   1 RYTGPKFKLSRRLGvNLFGKSRKLLLKRKyPPGQHG---QRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKLK 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040    81 GSSGRFLLTFLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQKNIESKE 160
Cdd:TIGR01017  78 GNTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETNG 157

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 11467040   161 LLLIPPHLSLNKKNLEAKIIGLINRKAISLIVNELLVIEFYSR 203
Cdd:TIGR01017 158 QRNIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 93-155 1.76e-13

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 62.65  E-value: 1.76e-13
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 11467040  93 MRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVSENVIQKN 155
Cdd:cd00165   1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVYED 63
S4 pfam01479
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ...
 93-140 6.30e-12

S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.


Pssm-ID: 396182 [Multi-domain]  Cd Length: 48  Bit Score: 57.89  E-value: 6.30e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 11467040    93 MRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSII 140
Cdd:pfam01479   1 RRLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-73 7.16e-11

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 56.40  E-value: 7.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11467040     3 RYRGPRLRIVRRIGKLPSLTNKTSKKRKS----------PGQPAtsfkRKKKISKYNIRLKEKQKLRFNYGITERQLLNY 72
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKKGRCHRELKVaqnrreypkyPGQHG----KIRKLSEYLLQLREKQKVRRKYGLLEKQLRKL 76


                  .
gi 11467040    73 V 73
Cdd:pfam00163  77 Y 77
S4 smart00363
S4 RNA-binding domain;
93-148 9.40e-11

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 55.29  E-value: 9.40e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 11467040     93 MRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKSIIKPKKSTVS 148
Cdd:smart00363   1 RRLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
rps4p PRK04051
30S ribosomal protein S4P; Validated
 90-133 1.31e-10

30S ribosomal protein S4P; Validated


Pssm-ID: 179730 [Multi-domain]  Cd Length: 177  Bit Score: 57.96  E-value: 1.31e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 11467040   90 FLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFI 133
Cdd:PRK04051 100 ILERRLQTIVYRKGLARTPKQARQFIVHGHIAVNGRRVTSPSYL 143
uS4_arch TIGR01018
ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein ...
 90-133 3.12e-10

ribosomal protein uS4, eukaryotic/archaeal type; This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273397 [Multi-domain]  Cd Length: 162  Bit Score: 56.66  E-value: 3.12e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 11467040    90 FLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFI 133
Cdd:TIGR01018 101 FLERRLQTQVYKKGLARTIHQARQLIVHGHIAVNGRVVTSPSYI 144
PLN00189 PLN00189
40S ribosomal protein S9; Provisional
 90-138 3.11e-06

40S ribosomal protein S9; Provisional


Pssm-ID: 177783 [Multi-domain]  Cd Length: 194  Bit Score: 45.90  E-value: 3.11e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 11467040   90 FLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFICQPKS 138
Cdd:PLN00189 106 FLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGKQIVNVPSFMVRVDS 154
PTZ00155 PTZ00155
40S ribosomal protein S9; Provisional
 90-133 5.36e-06

40S ribosomal protein S9; Provisional


Pssm-ID: 185484 [Multi-domain]  Cd Length: 181  Bit Score: 45.07  E-value: 5.36e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 11467040   90 FLEMRLDNIVHRIGFAPTIMAAKQLINHGHICVDDKVINIPSFI 133
Cdd:PTZ00155 104 LLERRLQTKVFKLGLAKSIHHARVLIRQRHIRVGKQIVDIPSFL 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH