NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|11466816|ref|NP_039412|]
View 

photosystem II protein T (plastid) [Oryza sativa Japonica Group]

Protein Classification

photosystem II protein T( domain architecture ID 10000029)

photosystem II reaction center protein T (PSII-T) may play a role in the dimerization of PSII

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
psbT CHL00031
photosystem II protein T
 1-33 3.70e-13

photosystem II protein T


:

Pssm-ID: 176972  Cd Length: 33  Bit Score: 55.07  E-value: 3.70e-13
                        10        20        30
                ....*....|....*....|....*....|...
gi 11466816   1 MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKK 33
Cdd:CHL00031  1 MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKK 33
 
Name Accession Description Interval E-value
psbT CHL00031
photosystem II protein T
 1-33 3.70e-13

photosystem II protein T


Pssm-ID: 176972  Cd Length: 33  Bit Score: 55.07  E-value: 3.70e-13
                        10        20        30
                ....*....|....*....|....*....|...
gi 11466816   1 MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKK 33
Cdd:CHL00031  1 MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKK 33
PsbT pfam01405
Photosystem II reaction centre T protein; The exact function of this protein is unknown. It ...
 1-29 1.40e-07

Photosystem II reaction centre T protein; The exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity under adverse growth conditions.


Pssm-ID: 426247  Cd Length: 29  Bit Score: 41.17  E-value: 1.40e-07
                         10        20
                 ....*....|....*....|....*....
gi 11466816    1 MEALVYTFLLVSTLGIIFFAIFFREPPKV 29
Cdd:pfam01405  1 MEALVYTLILTLTLGTLFFAIAFRDPPRI 29
PsbT COG5731
Photosystem II reaction center protein T, PsbT/Ycf8 [Energy production and conversion]; ...
 1-33 2.04e-05

Photosystem II reaction center protein T, PsbT/Ycf8 [Energy production and conversion]; Photosystem II reaction center protein T, PsbT/Ycf8 is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444441  Cd Length: 33  Bit Score: 35.84  E-value: 2.04e-05
                       10        20        30
               ....*....|....*....|....*....|...
gi 11466816  1 MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKK 33
Cdd:COG5731  1 MESIAYILILALAIGTLFFAIAFREPPRIGKKK 33
 
Name Accession Description Interval E-value
psbT CHL00031
photosystem II protein T
 1-33 3.70e-13

photosystem II protein T


Pssm-ID: 176972  Cd Length: 33  Bit Score: 55.07  E-value: 3.70e-13
                        10        20        30
                ....*....|....*....|....*....|...
gi 11466816   1 MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKK 33
Cdd:CHL00031  1 MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKK 33
PsbT pfam01405
Photosystem II reaction centre T protein; The exact function of this protein is unknown. It ...
 1-29 1.40e-07

Photosystem II reaction centre T protein; The exact function of this protein is unknown. It probably consists of a single transmembrane spanning helix. The Swiss:P37256 protein, appears to be (i) a novel photosystem II subunit and (ii) required for maintaining optimal photosystem II activity under adverse growth conditions.


Pssm-ID: 426247  Cd Length: 29  Bit Score: 41.17  E-value: 1.40e-07
                         10        20
                 ....*....|....*....|....*....
gi 11466816    1 MEALVYTFLLVSTLGIIFFAIFFREPPKV 29
Cdd:pfam01405  1 MEALVYTLILTLTLGTLFFAIAFRDPPRI 29
PsbT COG5731
Photosystem II reaction center protein T, PsbT/Ycf8 [Energy production and conversion]; ...
 1-33 2.04e-05

Photosystem II reaction center protein T, PsbT/Ycf8 [Energy production and conversion]; Photosystem II reaction center protein T, PsbT/Ycf8 is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444441  Cd Length: 33  Bit Score: 35.84  E-value: 2.04e-05
                       10        20        30
               ....*....|....*....|....*....|...
gi 11466816  1 MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKK 33
Cdd:COG5731  1 MESIAYILILALAIGTLFFAIAFREPPRIGKKK 33
psbT PRK11875
photosystem II reaction center protein T; Reviewed
 1-29 2.84e-04

photosystem II reaction center protein T; Reviewed


Pssm-ID: 183353  Cd Length: 31  Bit Score: 32.74  E-value: 2.84e-04
                        10        20
                ....*....|....*....|....*....
gi 11466816   1 MEALVYTFLLVSTLGIIFFAIFFREPPKV 29
Cdd:PRK11875  1 MESFAYILILTLALVTLFFAIAFRDPPKI 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH