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Conserved domains on  [gi|1143650213|gb|AQM57173|]
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NADH dehydrogenase subunit 1, partial (mitochondrion) [Cosmocampus balli]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009580)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-325 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177192  Cd Length: 324  Bit Score: 612.77  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213   1 MTNALLTQIANPLACIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLA 80
Cdd:MTH00134    1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  81 PMLALTIALTMWMPLPLPYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACI 160
Cdd:MTH00134   81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 161 IFTGNFTLQTFNTTQEAVWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Cdd:MTH00134  161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 241 NTLSAILFLGASQpiIPTLYELSATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIWHLSLPLAFA 320
Cdd:MTH00134  241 NTLSAILFLGASH--IPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFA 318


                  ....*
gi 1143650213 321 GIPPQ 325
Cdd:MTH00134  319 GLPPQ 323
 
Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 612.77  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213   1 MTNALLTQIANPLACIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLA 80
Cdd:MTH00134    1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  81 PMLALTIALTMWMPLPLPYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACI 160
Cdd:MTH00134   81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 161 IFTGNFTLQTFNTTQEAVWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Cdd:MTH00134  161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 241 NTLSAILFLGASQpiIPTLYELSATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIWHLSLPLAFA 320
Cdd:MTH00134  241 NTLSAILFLGASH--IPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFA 318


                  ....*
gi 1143650213 321 GIPPQ 325
Cdd:MTH00134  319 GLPPQ 323
NADHdh pfam00146
NADH dehydrogenase;
13-311 9.49e-122

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 351.78  E-value: 9.49e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  13 LACIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPMLALTIALTMW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  93 MPLPL--PYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIFTGNFTLQT 170
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 171 FNTTQEAVWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1143650213 251 ASQPIIPTlyeLSATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIW 311
Cdd:pfam00146 243 GWLGPFPL---PGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 13-311 4.83e-113

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 330.55  E-value: 4.83e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  13 LACIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPMLALTIALTMW 92
Cdd:COG1005    16 LVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAF 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  93 MPLPL--PYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIFTGNFTLQT 170
Cdd:COG1005    96 AVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSE 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 171 FNTTQEA-VWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFL 249
Cdd:COG1005   176 IVEAQAGgLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFL 255

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1143650213 250 GASQ---PIIPTLYELSATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIW 311
Cdd:COG1005   256 GGWLgpfPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
 
Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 612.77  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213   1 MTNALLTQIANPLACIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLA 80
Cdd:MTH00134    1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  81 PMLALTIALTMWMPLPLPYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACI 160
Cdd:MTH00134   81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 161 IFTGNFTLQTFNTTQEAVWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Cdd:MTH00134  161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 241 NTLSAILFLGASQpiIPTLYELSATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIWHLSLPLAFA 320
Cdd:MTH00134  241 NTLSAILFLGASH--IPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFA 318


                  ....*
gi 1143650213 321 GIPPQ 325
Cdd:MTH00134  319 GLPPQ 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 558.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213   3 NALLTQIANPLACIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPM 82
Cdd:MTH00071    2 MTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  83 LALTIALTMWMPLPLPYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIF 162
Cdd:MTH00071   82 MALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 163 TGNFTLQTFNTTQEAVWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNT 242
Cdd:MTH00071  162 TGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 243 LSAILFLGASqpIIPTLYELSATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIWHLSLPLAFAGI 322
Cdd:MTH00071  242 LSTILFLGST--YNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGI 319


                  ...
gi 1143650213 323 PPQ 325
Cdd:MTH00071  320 PPM 322
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 5-326 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 548.73  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213   5 LLTQIANPLACIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPMLA 84
Cdd:MTH00111    4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  85 LTIALTMWMPLPLPYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIFTG 164
Cdd:MTH00111   84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 165 NFTLQTFNTTQEAVWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLS 244
Cdd:MTH00111  164 GYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 245 AILFLGASQPIIPTlyELSATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIWHLSLPLAFAGIPP 324
Cdd:MTH00111  244 TILFLNPSTLNLPP--ELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPP 321


                  ..
gi 1143650213 325 QS 326
Cdd:MTH00111  322 QL 323
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 11-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 507.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  11 NPLACIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPMLALTIALT 90
Cdd:MTH00104    5 NILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALT 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  91 MWMPLPLPYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIFTGNFTLQT 170
Cdd:MTH00104   85 MWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLST 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 171 FNTTQEAVWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLG 250
Cdd:MTH00104  165 LITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILFLG 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1143650213 251 ASQPiiPTLYELSATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIWHLSLPLAFAGIPPQ 325
Cdd:MTH00104  245 AFHN--PYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQ 317
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 5-324 1.10e-164

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 460.92  E-value: 1.10e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213   5 LLTQIANPLACIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPMLA 84
Cdd:MTH00218    1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  85 LTIALTMWMPLPLPYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIFTG 164
Cdd:MTH00218   81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 165 NFTLQTFNTTQEAVWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLS 244
Cdd:MTH00218  161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 245 AILFLGASQPIIptlyelsatSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIWHLSLPLAFAGIPP 324
Cdd:MTH00218  241 VILFLGTSLTTI---------NLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 3-324 3.82e-163

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 457.52  E-value: 3.82e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213   3 NALLTQIANPLACIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPM 82
Cdd:MTH00040    1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  83 LALTIALTMWMPLPLPYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIF 162
Cdd:MTH00040   81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 163 TGNFTLQTFNTTQEAVWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNT 242
Cdd:MTH00040  161 SGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 243 LSAILFLGASQPiIPTLYELSATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIWHLSLPLAFAGI 322
Cdd:MTH00040  241 LSVILFLGGGSP-FNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNIL 319


                  ..
gi 1143650213 323 PP 324
Cdd:MTH00040  320 PP 321
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 16-321 6.42e-129

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 370.23  E-value: 6.42e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  16 IVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPMLALTIALTMWMPL 95
Cdd:MTH00195   12 IVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPI 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  96 PLPYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIFTGNFTLQTFNTTQ 175
Cdd:MTH00195   92 PSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISQ 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 176 EAVWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGASQPI 255
Cdd:MTH00195  172 GFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGGGGTI 251

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1143650213 256 IptlyelsatsLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIWHLSLPLAFAG 321
Cdd:MTH00195  252 I----------VALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 19-310 1.51e-127

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 366.50  E-value: 1.51e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  19 VLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPMLALTIALTMWMPLPLP 98
Cdd:MTH00143   14 VLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSY 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  99 YPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIFTGNFTLQTFNTTQEAV 178
Cdd:MTH00143   94 FSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSV 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 179 WLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGASQPiipt 258
Cdd:MTH00143  174 WLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGSSV---- 249

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1143650213 259 LYELSATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALII 310
Cdd:MTH00143  250 LFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILV 301
NADHdh pfam00146
NADH dehydrogenase;
13-311 9.49e-122

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 351.78  E-value: 9.49e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  13 LACIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPMLALTIALTMW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  93 MPLPL--PYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIFTGNFTLQT 170
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 171 FNTTQEAVWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1143650213 251 ASQPIIPTlyeLSATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIW 311
Cdd:pfam00146 243 GWLGPFPL---PGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 16-319 2.21e-121

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 350.99  E-value: 2.21e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  16 IVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPMLALTIALTMWMPL 95
Cdd:MTH00193   12 IICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIY 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  96 PLPYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIFTGNFTLQTFNTTQ 175
Cdd:MTH00193   92 PYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQ 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 176 EAVWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGASQPI 255
Cdd:MTH00193  172 KYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGDLLS 251

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1143650213 256 IptlyelsatSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIWHLSLPLAF 319
Cdd:MTH00193  252 L---------LFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 19-315 8.21e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 342.01  E-value: 8.21e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  19 VLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPMLALTIALTMWMPLPLP 98
Cdd:MTH00225   14 LLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYPSM 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  99 YPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIFTGNFTLQTFNTTQEAV 178
Cdd:MTH00225   94 FSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQKYF 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 179 WLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGASQPIIPT 258
Cdd:MTH00225  174 WFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFGGFFVTIDL 253

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1143650213 259 LyelsatsLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIWHLSL 315
Cdd:MTH00225  254 F-------LILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 13-324 1.65e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 331.69  E-value: 1.65e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  13 LACIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPMLALTIALTMW 92
Cdd:MTH00054    9 LAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAW 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  93 MPLPLPYPVI--NINLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIFTGNFTLQT 170
Cdd:MTH00054   89 GVIPYGEGVVlsDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTE 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 171 FNTTQEAVWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLG 250
Cdd:MTH00054  169 IVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLG 248

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1143650213 251 ASQ-PIIPTLYELSATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIWHLSLPLAFAGIPP 324
Cdd:MTH00054  249 GWLvISGPTSYFSNFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 13-311 4.83e-113

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 330.55  E-value: 4.83e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  13 LACIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPMLALTIALTMW 92
Cdd:COG1005    16 LVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAF 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  93 MPLPL--PYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIFTGNFTLQT 170
Cdd:COG1005    96 AVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSE 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 171 FNTTQEA-VWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFL 249
Cdd:COG1005   176 IVEAQAGgLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFL 255

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1143650213 250 GASQ---PIIPTLYELSATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIW 311
Cdd:COG1005   256 GGWLgpfPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-324 8.32e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 327.46  E-value: 8.32e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213   1 MTNALLTQIANPLACIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLA 80
Cdd:MTH00216    1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  81 PMLALTIALTMWMPLPLPYPVI--NINLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLA 158
Cdd:MTH00216   81 PVLSFTLALIVWGVIPYERGVLisDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIIS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 159 CIIFTGNFTL-QTFNTTQEAVWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANI 237
Cdd:MTH00216  161 VLLCVGSLSItEIVLAQNNGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHI 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 238 LLMNTLSAILFLGASQPIIPTLYeLSATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIWHLSLPL 317
Cdd:MTH00216  241 ILMSCLTTILFLGGWLSPIKYFK-GGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLF 319


                  ....*..
gi 1143650213 318 AFAGIPP 324
Cdd:MTH00216  320 GFNGPPP 326
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-311 5.39e-110

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 322.53  E-value: 5.39e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213   1 MTNALLTQIANPLACIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLA 80
Cdd:PRK06076    5 GPDLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  81 PMLALTIALTMWMPLPL--PYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLA 158
Cdd:PRK06076   85 PVIAFIPAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLA 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 159 CIIFTGNFTLQTFNTTQEAVWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIL 238
Cdd:PRK06076  165 VVLLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMI 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1143650213 239 LMNTLSAILFLGASQPIIPTLYELS-ATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIW 311
Cdd:PRK06076  245 LVSALITTLFLGGWLPPFPLGGGIPgAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 16-319 7.84e-98

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 291.30  E-value: 7.84e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  16 IVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPMLALTIALTMWMPL 95
Cdd:MTH00010   13 YVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  96 PLPYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIFTGNFTLQTFNTTQ 175
Cdd:MTH00010   93 PHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMSQ 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 176 EAvWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGASQPI 255
Cdd:MTH00010  173 YS-WILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFTSFIPSI 251

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1143650213 256 IptlyeLSATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIwhLSLPLAF 319
Cdd:MTH00010  252 F-----ISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM--ISIPIMF 308
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 3-324 3.03e-94

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 283.45  E-value: 3.03e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213   3 NALLTQIANPLACIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPM 82
Cdd:MTH00029    4 YSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPI 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  83 LALTIALTMWMPLPLPYPVI--NINLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACI 160
Cdd:MTH00029   84 ISFTLAILAWAIVTMDQGVFlsDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVI 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 161 IFTGNFTLQTFNTTQEAVWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Cdd:MTH00029  164 LCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILM 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 241 NTLSAILFLGASQPIIPTLYEL--------------SATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMAL 306
Cdd:MTH00029  244 SCMMTIFFLGGWLSPLDGIPTPpeafsifeqiasskSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSL 323

                         330
                  ....*....|....*...
gi 1143650213 307 ALIIWHLSLPLAFAGIPP 324
Cdd:MTH00029  324 GLVILTAGILIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 16-306 3.00e-68

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 214.76  E-value: 3.00e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  16 IVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPMLALTIALTMWMPL 95
Cdd:MTH00090    6 MIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  96 PLPYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIFTGNFTLQTFNTtq 175
Cdd:MTH00090   86 PYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSSFS-- 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 176 eaVWLMIpawpLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGasqpi 255
Cdd:MTH00090  164 --LSLFV----IYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK----- 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1143650213 256 iptlyelsaTSLMIKAMLLSLMfLWVRASYPRFRYDQLMHLIWKNFLPMAL 306
Cdd:MTH00090  233 ---------FSFLMLFLIFSLL-IFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 19-313 3.18e-55

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 181.66  E-value: 3.18e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  19 VLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLFLLAPMLALTIALTMWMPLPLP 98
Cdd:MTH00058   14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSY 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  99 YPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIFTGNFTLQTFNTTQEAV 178
Cdd:MTH00058   94 YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLS 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 179 WLMIPawPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGASQPIIPT 258
Cdd:MTH00058  174 VLLFP--LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGGFVSIML 251

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1143650213 259 LYELsatslmikamllsLMFLWVRASYPRFRYDQLMHLIWKnflpMALALIIWHL 313
Cdd:MTH00058  252 LFHL-------------LFFMWARATLPRVRYDYFVNFFWE----YCLVLLILSL 289
ndhA CHL00032
NADH dehydrogenase subunit 1
 5-306 2.33e-48

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 165.89  E-value: 2.33e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213   5 LLTQIANPLACIVPVLLAVAFLTL-------LERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSAASPLLF 77
Cdd:CHL00032   19 SLKEVYGLIWILVPILTLVLGITIgvlvivwLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLF 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  78 LLAPMLALTIALTMWMPLPLPYPVI--NINLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLI 155
Cdd:CHL00032   99 SIGPSIAVISILLSYLVIPFGYHLVlaDLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLC 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 156 LLACIIFTGnfTLQTFNTTQEAVWLMIPAWPL------MAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALF 229
Cdd:CHL00032  179 VLSISLLSN--SLSTVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLF 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 230 FLAEYANILLMNTLSAILFLGASQPIIPT-----LYELSATSLMIKAML-------LSLMFLWV----RASYPRFRYDQL 293
Cdd:CHL00032  257 YVASYLNLLVSSLFVTVLYLGGWNLSIPYifipeLFEINKTGGVFGTTIgifitlaKTYLFLFIsittRWTLPRLRMDQL 336

                         330
                  ....*....|...
gi 1143650213 294 MHLIWKNFLPMAL 306
Cdd:CHL00032  337 LNLGWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
6-311 1.03e-32

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 122.98  E-value: 1.03e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213   6 LTQIANPLACIVPVLLAVAFLTLLERKVLGYMQLRKGPnivgpyGLLQPIADGVKLFIKEPVRPSAASPLlFLLAPMLAL 85
Cdd:COG0650     1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVAL 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213  86 --TIALTMWMPLPLPYPVININLSILFIMAMSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLACIIFT 163
Cdd:COG0650    74 aaMLLAALLVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLA 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143650213 164 GNFTLQTFNTTQEA---VWLMIPAWPLMAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Cdd:COG0650   154 GSTSLSDIVAYQAAhgpLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVL 233

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1143650213 241 NTLSAILFLGASqpiIPTLYELSATSLMIKAMLLSLMFLWVRASYPRFRYDQLMHLIWKNFLPMALALIIW 311
Cdd:COG0650   234 LSLFVNLFLPWG---IALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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