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Conserved domains on  [gi|1143639188|gb|AQM56530|]
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transformer, partial [Drosophila ellisoni]

Protein Classification

Transformer domain-containing protein( domain architecture ID 12071001)

Transformer domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Transformer pfam06495
Fruit fly transformer protein; This family consists of transformer proteins from several ...
 1-121 5.64e-18

Fruit fly transformer protein; This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster.


:

Pssm-ID: 253769 [Multi-domain]  Cd Length: 182  Bit Score: 75.08  E-value: 5.64e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143639188   1 DSRRRARPKEKVPYFADEGRERDRVRNQRHRKTSITQPTTAARGRPMRARSRSYSAERHSSRRRRRSRSYERRRSRSRHK 80
Cdd:pfam06495  12 DTRRDSRKKEKIPYFADEVRERDRVRNLRQRKTQSTRPTTSHRGRRTRSRSRSQSAERNSCQRRHRSRSRSRNRSDSRHR 91

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1143639188  81 TapTPAATQCRRRSRSRSRSRTPRIITVPVPVPAADYPYAY 121
Cdd:pfam06495  92 S--TSSTERRRRSRSRSRYSRTPRIITVPVPVPAADYPYAY 130
 
Name Accession Description Interval E-value
Transformer pfam06495
Fruit fly transformer protein; This family consists of transformer proteins from several ...
 1-121 5.64e-18

Fruit fly transformer protein; This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster.


Pssm-ID: 253769 [Multi-domain]  Cd Length: 182  Bit Score: 75.08  E-value: 5.64e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143639188   1 DSRRRARPKEKVPYFADEGRERDRVRNQRHRKTSITQPTTAARGRPMRARSRSYSAERHSSRRRRRSRSYERRRSRSRHK 80
Cdd:pfam06495  12 DTRRDSRKKEKIPYFADEVRERDRVRNLRQRKTQSTRPTTSHRGRRTRSRSRSQSAERNSCQRRHRSRSRSRNRSDSRHR 91

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1143639188  81 TapTPAATQCRRRSRSRSRSRTPRIITVPVPVPAADYPYAY 121
Cdd:pfam06495  92 S--TSSTERRRRSRSRSRYSRTPRIITVPVPVPAADYPYAY 130
 
Name Accession Description Interval E-value
Transformer pfam06495
Fruit fly transformer protein; This family consists of transformer proteins from several ...
 1-121 5.64e-18

Fruit fly transformer protein; This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster.


Pssm-ID: 253769 [Multi-domain]  Cd Length: 182  Bit Score: 75.08  E-value: 5.64e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143639188   1 DSRRRARPKEKVPYFADEGRERDRVRNQRHRKTSITQPTTAARGRPMRARSRSYSAERHSSRRRRRSRSYERRRSRSRHK 80
Cdd:pfam06495  12 DTRRDSRKKEKIPYFADEVRERDRVRNLRQRKTQSTRPTTSHRGRRTRSRSRSQSAERNSCQRRHRSRSRSRNRSDSRHR 91

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1143639188  81 TapTPAATQCRRRSRSRSRSRTPRIITVPVPVPAADYPYAY 121
Cdd:pfam06495  92 S--TSSTERRRRSRSRSRYSRTPRIITVPVPVPAADYPYAY 130
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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