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Conserved domains on  [gi|1143619507|gb|AQM55297|]
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hypothetical protein 2 [San Bernardo virus]

Protein Classification

DiSB-ORF2_chro domain-containing protein( domain architecture ID 11243458)

DiSB-ORF2_chro domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DiSB-ORF2_chro pfam16506
Putative virion glycoprotein of insect viruses; This entry corresponds to putative ...
 58-119 9.25e-17

Putative virion glycoprotein of insect viruses; This entry corresponds to putative glycoproteins from chroparaviruses. It carries two putative disulfide bridges. No similarity can be found with any other glycoproteins outside this region.


:

Pssm-ID: 465149  Cd Length: 100  Bit Score: 75.13  E-value: 9.25e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1143619507  58 CVSVYRTNDWFFAGCELPSHCLGITVSVVEKKWYGQETVFCHATyHPDRTETYefYNIEFRP 119
Cdd:pfam16506   1 CLSLLETNSLAFTDCELPASCGNVHAKQLDHGWYGSEVVLCYGT-HRDRVSTS--YNIPVAF 59
 
Name Accession Description Interval E-value
DiSB-ORF2_chro pfam16506
Putative virion glycoprotein of insect viruses; This entry corresponds to putative ...
 58-119 9.25e-17

Putative virion glycoprotein of insect viruses; This entry corresponds to putative glycoproteins from chroparaviruses. It carries two putative disulfide bridges. No similarity can be found with any other glycoproteins outside this region.


Pssm-ID: 465149  Cd Length: 100  Bit Score: 75.13  E-value: 9.25e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1143619507  58 CVSVYRTNDWFFAGCELPSHCLGITVSVVEKKWYGQETVFCHATyHPDRTETYefYNIEFRP 119
Cdd:pfam16506   1 CLSLLETNSLAFTDCELPASCGNVHAKQLDHGWYGSEVVLCYGT-HRDRVSTS--YNIPVAF 59
 
Name Accession Description Interval E-value
DiSB-ORF2_chro pfam16506
Putative virion glycoprotein of insect viruses; This entry corresponds to putative ...
 58-119 9.25e-17

Putative virion glycoprotein of insect viruses; This entry corresponds to putative glycoproteins from chroparaviruses. It carries two putative disulfide bridges. No similarity can be found with any other glycoproteins outside this region.


Pssm-ID: 465149  Cd Length: 100  Bit Score: 75.13  E-value: 9.25e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1143619507  58 CVSVYRTNDWFFAGCELPSHCLGITVSVVEKKWYGQETVFCHATyHPDRTETYefYNIEFRP 119
Cdd:pfam16506   1 CLSLLETNSLAFTDCELPASCGNVHAKQLDHGWYGSEVVLCYGT-HRDRVSTS--YNIPVAF 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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