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Conserved domains on  [gi|1143273218|gb|AQM40132|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Lipotactes tripyrga]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 7-176 2.98e-28

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 102.96  E-value: 2.98e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143273218   7 ILLLTMFNSLLFTQLNHPLAMTLTIVLQTIMICLMTYMISSTAWFSYILFLVFLGGMLVVFIYITSLASNELFTISIQYT 86
Cdd:MTH00166    4 LMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143273218  87 LMAFIFIMITIFMLTSIDSSLWNIFpqntemlelphngSIMNNETTYLLTKLYNKPTNIITILLMNYLLLTLIIVVKITD 166
Cdd:MTH00166   84 ILFLLMLLLMLNNFIKNSEMSNFNN-------------NFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITN 150

                         170
                  ....*....|
gi 1143273218 167 IYKGPLRPKN 176
Cdd:MTH00166  151 IFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 7-176 2.98e-28

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 102.96  E-value: 2.98e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143273218   7 ILLLTMFNSLLFTQLNHPLAMTLTIVLQTIMICLMTYMISSTAWFSYILFLVFLGGMLVVFIYITSLASNELFTISIQYT 86
Cdd:MTH00166    4 LMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143273218  87 LMAFIFIMITIFMLTSIDSSLWNIFpqntemlelphngSIMNNETTYLLTKLYNKPTNIITILLMNYLLLTLIIVVKITD 166
Cdd:MTH00166   84 ILFLLMLLLMLNNFIKNSEMSNFNN-------------NFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITN 150

                         170
                  ....*....|
gi 1143273218 167 IYKGPLRPKN 176
Cdd:MTH00166  151 IFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 7-176 2.98e-28

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 102.96  E-value: 2.98e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143273218   7 ILLLTMFNSLLFTQLNHPLAMTLTIVLQTIMICLMTYMISSTAWFSYILFLVFLGGMLVVFIYITSLASNELFTISIQYT 86
Cdd:MTH00166    4 LMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSLKLL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143273218  87 LMAFIFIMITIFMLTSIDSSLWNIFpqntemlelphngSIMNNETTYLLTKLYNKPTNIITILLMNYLLLTLIIVVKITD 166
Cdd:MTH00166   84 ILFLLMLLLMLNNFIKNSEMSNFNN-------------NFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKITN 150

                         170
                  ....*....|
gi 1143273218 167 IYKGPLRPKN 176
Cdd:MTH00166  151 IFKGPLRSKN 160
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 2-127 2.52e-11

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 58.74  E-value: 2.52e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143273218   2 MLYINILLLTMFNSLLFTQLNHPLAMTLTIVLQTIMICLMTYMISSTaWFSYILFLVFLGGMLVVFIYITSLASNELFTI 81
Cdd:MTH00152    1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLSS-WYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGS 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1143273218  82 S---IQYTLMAFIFIMITIFMLTSIDSSLWNIFPQNTEMLELPHNGSIM 127
Cdd:MTH00152   80 NfkfVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGL 128
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 2-175 7.90e-09

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 51.93  E-value: 7.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143273218   2 MLYINILLLTMFNSLLFTQLNHPLAMTLTIVLQTIMICLMTYMISSTaWFSYILFLVFLGGMLVVFIYITSLASNELFTI 81
Cdd:MTH00212    1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLIITMESNS-WYGYILFLIYIGGLLVLFGYMVALSPNEHLFF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143273218  82 SIQYTLMAFIFIMITIFMLTSIDSSLWNIFPQNTEMLelphngsimnnettYLLTKLYNKPTNIITILLMNYLLLTLIIV 161
Cdd:MTH00212   80 KKYFKGFGMILISLNLYLLLMTLGSSNFSPMLNLKLE--------------LNVSKILSNNNIPILLFLGLILLIALLMV 145

                         170
                  ....*....|....
gi 1143273218 162 VKITDIYKGPLRPK 175
Cdd:MTH00212  146 VKICQYYKGPLRPF 159
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 52-75 2.05e-05

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 42.82  E-value: 2.05e-05
                          10        20
                  ....*....|....*....|....
gi 1143273218  52 SYILFLVFLGGMLVVFIYITSLAS 75
Cdd:MTH00138   52 SLVLFLIYLGGMLVVFAYSAALAA 75
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 1-110 2.96e-04

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 39.50  E-value: 2.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143273218   1 MMLYINILLLTMFNSLLFTQLNhPLAMTLTIVLQTIMICLMTYMISSTaWFSYILFLVFLGGMLVVFIYITSLaSNELFT 80
Cdd:MTH00045    1 MVFYLFLILMLFGSTLVFYSLS-PYYSALGLVLVSLSGCLLLSLLGLS-FLALLLLLIYMGGMLVVFVYSSAL-SAERYP 77

                          90       100       110
                  ....*....|....*....|....*....|
gi 1143273218  81 ISIQYTLMAFIFIMITIFMLTSIDSSLWNI 110
Cdd:MTH00045   78 SVSNLGEVLVLSLLLSLWVFISFDNFLELS 107
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 52-74 3.75e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 39.06  E-value: 3.75e-04
                          10        20
                  ....*....|....*....|...
gi 1143273218  52 SYILFLVFLGGMLVVFIYITSLA 74
Cdd:MTH00065   52 SLVLFLIYLGGMLVVFAYSAALA 74
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 50-75 4.51e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 38.96  E-value: 4.51e-04
                          10        20
                  ....*....|....*....|....*.
gi 1143273218  50 WFSYILFLVFLGGMLVVFIYITSLAS 75
Cdd:MTH00115   50 FVSLVLFLVYLGGMLVVFAYSVSLAA 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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