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Conserved domains on  [gi|1143272923|gb|AQM39858|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Tegra novaehollandiae viridinotata]

Protein Classification

NADH dehydrogenase subunit 4L( domain architecture ID 10009597)

NADH dehydrogenase subunit 4L is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 4-92 6.54e-21

NADH dehydrogenase subunit 4L; Provisional


:

Pssm-ID: 177218  Cd Length: 89  Bit Score: 79.04  E-value: 6.54e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272923  4 MINWVVLVSMMMMGIWVFCSNRKHLLAMLLSLEVMVLCMFLMLFILLNFFENEMYFLMVFLSFSVCEGALGLSILVLLIR 83
Cdd:MTH00162   1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIR 80


                 ....*....
gi 1143272923 84 THGNDYFQS 92
Cdd:MTH00162  81 SHGNDYFSS 89
 
Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 4-92 6.54e-21

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 79.04  E-value: 6.54e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272923  4 MINWVVLVSMMMMGIWVFCSNRKHLLAMLLSLEVMVLCMFLMLFILLNFFENEMYFLMVFLSFSVCEGALGLSILVLLIR 83
Cdd:MTH00162   1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIR 80


                 ....*....
gi 1143272923 84 THGNDYFQS 92
Cdd:MTH00162  81 SHGNDYFSS 89
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
7-98 6.20e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 46.02  E-value: 6.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272923  7 WVVLVSMMMMGIWVFC-SNRKHLLAMLLSLEVMVLCMFLMLFILLNFFEN--EMYFLMVFLSFSVCEGALGLSILVLLIR 83
Cdd:pfam00420  1 AYLLLSGLLFLIGLYGlLLRRNLLRVLLSLELMLNAVNLALVLFGRLTADplPQALILTAIVIAAAEAAVGLALLVRIYR 80

                         90
                 ....*....|....*
gi 1143272923 84 THGNDYFQSFSILQC 98
Cdd:pfam00420 81 THGTDDVDSLNLLKG 95
 
Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 4-92 6.54e-21

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 79.04  E-value: 6.54e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272923  4 MINWVVLVSMMMMGIWVFCSNRKHLLAMLLSLEVMVLCMFLMLFILLNFFENEMYFLMVFLSFSVCEGALGLSILVLLIR 83
Cdd:MTH00162   1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIR 80


                 ....*....
gi 1143272923 84 THGNDYFQS 92
Cdd:MTH00162  81 SHGNDYFSS 89
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 3-98 5.06e-14

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 61.78  E-value: 5.06e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272923  3 MMINWVVLVSMMMMGIWVFCSNRKHLLAMLLSLEVMVLCMFLMLFILLNFFENEMYFLMVFLSFSVCEGALGLSILVLLI 82
Cdd:MTH00149   2 MFMLLLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMMFSSSGLISFSSYLFLIILTFGACEASLGLSLLVSLI 81

                         90
                 ....*....|....*.
gi 1143272923 83 RTHGNDYFQSFSILQC 98
Cdd:MTH00149  82 RLHGNDYVSSLSSLKF 97
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 3-98 5.07e-12

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 56.54  E-value: 5.07e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272923  3 MMINWVVLVSMMMMGIWVFCSNRKHLLAMLLSLEVMVLCMFLMLFILLNFFENEMYFL--MVFLSFSVCEGALGLSILVL 80
Cdd:MTH00067   1 MSPTYFTFYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFSlpMFMLTFSACEASTGLALMVA 80

                         90
                 ....*....|....*...
gi 1143272923 81 LIRTHGNDYFQSFSILQC 98
Cdd:MTH00067  81 TTRTHGTDHLKNLNLLQC 98
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 9-98 5.17e-12

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 56.52  E-value: 5.17e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272923  9 VLVSMMMMGIWVFCSNRKHLLAMLLSLEVMVLCMFLMLFILLNFFENEMYFLMVFLSFSVCEGALGLSILVLLIRTHGND 88
Cdd:MTH00188   8 VILLFVVLGLFTFLLNRKHLLMLLLSLEAIMLSLFWFLLVGLSYMEKELYLSLVLLTFAACEASVGLALLVSLIRSHGSD 87

                         90
                 ....*....|
gi 1143272923 89 YFQSFSILQC 98
Cdd:MTH00188  88 YVSSLNLIKC 97
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 12-98 4.44e-11

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 54.20  E-value: 4.44e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272923 12 SMMMMGIWVFCSNRKHLLAMLLSLEVMVLCMFLMLFILLNFFENEMYFL--MVFLSFSVCEGALGLSILVLLIRTHGNDY 89
Cdd:MTH00126  10 SAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAapMLLLAFSACEASAGLALLVATARTHGTDR 89


                 ....*....
gi 1143272923 90 FQSFSILQC 98
Cdd:MTH00126  90 LQNLNLLQC 98
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 3-98 5.03e-11

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 54.08  E-value: 5.03e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272923  3 MMINWVVLVSMMMMGIWVFCSNRKHLLAMLLSLEVMVLCMFLML--FILLNFFENEMYFLMVFLSFSVCEGALGLSILVL 80
Cdd:MTH00125   1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLslWPITTQTPSFTPMPIILLTFSACEAGTGLALLVA 80

                         90
                 ....*....|....*...
gi 1143272923 81 LIRTHGNDYFQSFSILQC 98
Cdd:MTH00125  81 TTRTHGSDHLKNLNLLQC 98
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 7-96 2.74e-09

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 49.56  E-value: 2.74e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272923  7 WVVLVSMMMMGIWVFCSNRKHLLAMLLSLEVMVLCMF--LMLFILLNFFENEMYFLMVFLSFSVCEGALGLSILVLLIRT 84
Cdd:MTH00181   2 MFVFISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFllLALFSLLSSSSSMLMFGLILLTFSACEAVLGLSLLVATNRT 81

                         90
                 ....*....|..
gi 1143272923 85 HGNDYFQSFSIL 96
Cdd:MTH00181  82 HGSDHLLKFNLL 93
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
7-98 6.20e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 46.02  E-value: 6.20e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272923  7 WVVLVSMMMMGIWVFC-SNRKHLLAMLLSLEVMVLCMFLMLFILLNFFEN--EMYFLMVFLSFSVCEGALGLSILVLLIR 83
Cdd:pfam00420  1 AYLLLSGLLFLIGLYGlLLRRNLLRVLLSLELMLNAVNLALVLFGRLTADplPQALILTAIVIAAAEAAVGLALLVRIYR 80

                         90
                 ....*....|....*
gi 1143272923 84 THGNDYFQSFSILQC 98
Cdd:pfam00420 81 THGTDDVDSLNLLKG 95
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 3-97 3.58e-07

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 44.14  E-value: 3.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272923  3 MMINWVVLVSMMMMGIWVFCSNRKHLLAMLLSLEVMVLCMFLMLFILLNFFENEMY--FLMVFLSFSVCEGALGLSILVL 80
Cdd:MTH00043   1 MNIILIIILSSFFLGLLGILINRLHLLSILLCLELLLISLFLNISIWSLNYGNFSNlsFSLLLLTLSACEASIGLSLMVL 80

                         90
                 ....*....|....*..
gi 1143272923 81 LIRTHGNDYFQSFSILQ 97
Cdd:MTH00043  81 LSRNHNSDLVASLNLLQ 97
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 25-98 7.05e-07

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 43.38  E-value: 7.05e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1143272923 25 RKHLLAMLLSLEVMVLCMFLM--LFILLNFFENEMYFLMVFLSFSVCEGALGLSILVLLIRTHGNDYFQSFSILQC 98
Cdd:MTH00107  23 RSHLMSSLLCLEGMMLSLFIMatLTILNTHFTLASMMPIILLVFAACEAAVGLALLVMVSNTYGTDYVQNLNLLQC 98
ND4L MTH00013
NADH dehydrogenase subunit 4L; Validated
 3-98 1.20e-05

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 133655  Cd Length: 97  Bit Score: 40.12  E-value: 1.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272923  3 MMINWVVLVSMMMMGIWVFCSNRKHLLAMLLSLEVMVLCMFLML-FILLNFFENEMYFLMVFLSFSVCEGALGLSILVLL 81
Cdd:MTH00013   1 MMSPLFILSISPFISMFNLSLQRKHLLMSLLSLEAMILSLALFIpLSLMFANQVNGMLAIVLLTFGACEASLGLSLLVLM 80

                         90
                 ....*....|....*..
gi 1143272923 82 IRTHGNDYFQSFSILQC 98
Cdd:MTH00013  81 TRSYGNDMLKSLTSNKC 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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