NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1143272920|gb|AQM39855|]
View 

NADH dehydrogenase subunit 3 (mitochondrion) [Tegra novaehollandiae viridinotata]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 5.01e-28

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 98.70  E-value: 5.01e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272920   3 ILLTITLIVTFLSSLLMLMSSTLSMKTIYDQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVEIALLLPLIIILQ 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1143272920  83 WSSMISWSMLTLTFLIILLMGLYHEWNQGALDW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 5.01e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 98.70  E-value: 5.01e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272920   3 ILLTITLIVTFLSSLLMLMSSTLSMKTIYDQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVEIALLLPLIIILQ 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1143272920  83 WSSMISWSMLTLTFLIILLMGLYHEWNQGALDW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
31-70 2.66e-13

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 60.52  E-value: 2.66e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1143272920  31 YDQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVE 70
Cdd:pfam00507  12 PNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVE 51
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 31-70 1.95e-10

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 53.59  E-value: 1.95e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1143272920  31 YDQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVE 70
Cdd:COG0838    34 PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVE 73
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 5.01e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 98.70  E-value: 5.01e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272920   3 ILLTITLIVTFLSSLLMLMSSTLSMKTIYDQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVEIALLLPLIIILQ 82
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1143272920  83 WSSMISWSMLTLTFLIILLMGLYHEWNQGALDW 115
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 1.11e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 87.61  E-value: 1.11e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272920   1 MWILLTITLIVTFLSSLLMLMSSTLSMKTIYDQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVEIALLLPLIII 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1143272920  81 LQWSSMISWSMLTLTFLIILLMGLYHEWNQGALDWA 116
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 28-117 1.21e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 80.04  E-value: 1.21e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272920  28 KTIYDQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVEIALLLPLIIILQWSSMISWSMLTLTFLIILLMGLYHE 107
Cdd:MTH00202   28 RSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWSKGGLLGGTIFLLILIGGLIHE 107

                          90
                  ....*....|
gi 1143272920 108 WNQGALDWAI 117
Cdd:MTH00202  108 WKEGSLDWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 32-116 3.81e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 76.05  E-value: 3.81e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272920  32 DQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVEIALLLPLIIILQWSSMISWSMLTLTFLIILLMGLYHEWNQG 111
Cdd:MTH00012   32 DREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWREG 111


                  ....*
gi 1143272920 112 ALDWA 116
Cdd:MTH00012  112 SLDWS 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 32-116 3.29e-18

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 73.49  E-value: 3.29e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272920  32 DQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVEIALLLPLIIILQWSS---MISWSMltlTFLIILLMGLYHEW 108
Cdd:MTH00069   29 DSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTptnTLFWST---LILILLTLGLIYEW 105


                  ....*...
gi 1143272920 109 NQGALDWA 116
Cdd:MTH00069  106 IQGGLEWA 113
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 32-116 1.43e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 71.87  E-value: 1.43e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272920  32 DQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVEIALLLPLIIILQWSSMISWSMLTLTFLIILLMGLYHEWNQG 111
Cdd:MTH00136   31 DHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATAVLILLTLGLIYEWLQG 110


                  ....*
gi 1143272920 112 ALDWA 116
Cdd:MTH00136  111 GLEWA 115
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 32-116 3.08e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 71.07  E-value: 3.08e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272920  32 DQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVEIALLLPLIIILQWSSMISWSMLTLTFLIILLMGLYHEWNQG 111
Cdd:MTH00113   30 DNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTTTLTWATIILTLLTLGLIYEWLQG 109


                  ....*
gi 1143272920 112 ALDWA 116
Cdd:MTH00113  110 GLEWA 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 34-116 4.01e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 70.74  E-value: 4.01e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272920  34 EKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVEIALLLPLIIILQWSSMISWSMLTLTFLIILLMGLYHEWNQGAL 113
Cdd:MTH00106   32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLALSLAYEWTQKGL 111


                  ...
gi 1143272920 114 DWA 116
Cdd:MTH00106  112 EWT 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 32-116 1.02e-16

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 70.01  E-value: 1.02e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272920  32 DQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVEIALLLPLIIILQWSSMISWSMLTLTFLIILLMGLYHEWNQG 111
Cdd:MTH00042   31 DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPSTLLPISLIFLIILTIGLVYEWVNG 110


                  ....*
gi 1143272920 112 ALDWA 116
Cdd:MTH00042  111 GLEWA 115
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 28-115 9.53e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 67.23  E-value: 9.53e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272920  28 KTIYDQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVEIALLLPLIIILQWSSMisWSMLTLTFLIILLMGLYHE 107
Cdd:MTH00203   27 KVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSL--SLLLAFLFLILLTLGLIYE 104


                  ....*...
gi 1143272920 108 WNQGALDW 115
Cdd:MTH00203  105 WLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
31-70 2.66e-13

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 60.52  E-value: 2.66e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1143272920  31 YDQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVE 70
Cdd:pfam00507  12 PNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVE 51
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-115 7.28e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 57.41  E-value: 7.28e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272920  32 DQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVEIALLL-PLIIILQWSSMISWSMltLTFLIILLMGLYHEWNQ 110
Cdd:MTH00055   35 DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFpWCVVYNQIGLFGFWVM--YLFLIILTIGLIYEWVK 112


                  ....*
gi 1143272920 111 GALDW 115
Cdd:MTH00055  113 GGLEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 31-116 1.09e-10

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 54.48  E-value: 1.09e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272920  31 YDQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVEIALLLPLIIILQWSSMIS-WSMltLTFLIILLMGLYHEWN 109
Cdd:PRK06602   37 PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVSFREIGWLGfVEA--MIFILVLLVGLVYLWR 114


                  ....*..
gi 1143272920 110 QGALDWA 116
Cdd:PRK06602  115 KGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 31-70 1.95e-10

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 53.59  E-value: 1.95e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1143272920  31 YDQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVE 70
Cdd:COG0838    34 PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVE 73
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 32-115 4.31e-09

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 50.06  E-value: 4.31e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272920  32 DQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVEIALLLPLIIILQWSSMIS-WSMltLTFLIILLMGLYHEWNQ 110
Cdd:MTH00018   30 DREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPFGfWTM--VGFLFILTLGLIYEWIK 107


                  ....*
gi 1143272920 111 GALDW 115
Cdd:MTH00018  108 GGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 32-115 1.38e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 49.16  E-value: 1.38e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1143272920  32 DQEKSSPFECGFDPKMSSRLPFSMHFFLISVIFLIFDVEIALLLPLIIILQWSSMISWSMlTLTFLIILLMGLYHEWNQG 111
Cdd:MTH00030   40 DSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWI-VYTFLIVLAIGLAYEWIKG 118


                  ....
gi 1143272920 112 ALDW 115
Cdd:MTH00030  119 GLEW 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH