|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-200 |
1.92e-155 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 434.84 E-value: 1.92e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 1 MTNIRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLR 80
Cdd:MTH00100 1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 81 YLHANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00100 81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 11385555 161 VEWIWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFL 200
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
9-200 |
2.14e-90 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 263.07 E-value: 2.14e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 9 PLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGAS 88
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 89 MFFICLYLHVGRGLYYGSYMYT--ETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWG 166
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190
....*....|....*....|....*....|....
gi 11385555 167 GFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFL 194
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
18-200 |
3.36e-82 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 241.90 E-value: 3.36e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 18 FIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 97
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 98 VGRGLYYGSYMYT--ETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS*DKATL 175
Cdd:pfam00033 81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*
gi 11385555 176 TRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFL 185
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-200 |
9.19e-77 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 235.07 E-value: 9.19e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 1 MTNIRKSHPLMKIIND---------SFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICR 71
Cdd:COG1290 1 MSTTKKASGLADWLDErlplaslvrEHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 72 DVNYGWVLRYLHANGASMFFICLYLHVGRGLYYGSYMYTE--TWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNL 149
Cdd:COG1290 81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 11385555 150 LSAIPYIGTNLVEWIWGGFS*DKATLTRFFAFH-FLLPFII*AM*MVHLLFL 200
Cdd:COG1290 161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLL 212
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-200 |
1.92e-155 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 434.84 E-value: 1.92e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 1 MTNIRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLR 80
Cdd:MTH00100 1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 81 YLHANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00100 81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 11385555 161 VEWIWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFL 200
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-200 |
3.25e-139 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 393.63 E-value: 3.25e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 1 MTNIRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLR 80
Cdd:MTH00131 1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 81 YLHANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00131 81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 11385555 161 VEWIWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFL 200
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-200 |
1.28e-138 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 391.96 E-value: 1.28e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 1 MTNIRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLR 80
Cdd:MTH00119 2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 81 YLHANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00119 82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 11385555 161 VEWIWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFL 201
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-200 |
4.02e-136 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 385.57 E-value: 4.02e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 1 MTNIRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLR 80
Cdd:MTH00074 2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 81 YLHANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00074 82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 11385555 161 VEWIWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFL 201
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
4-200 |
1.48e-131 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 373.48 E-value: 1.48e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 4 IRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00191 1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 84 ANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00191 81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 11385555 164 IWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFL 197
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
11-200 |
1.51e-131 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 373.35 E-value: 1.51e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 11 MKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMF 90
Cdd:MTH00156 1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 91 FICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS* 170
Cdd:MTH00156 81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160
|
170 180 190
....*....|....*....|....*....|
gi 11385555 171 DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFL 190
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-200 |
9.79e-125 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 356.91 E-value: 9.79e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 1 MTNIRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLR 80
Cdd:MTH00145 2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 81 YLHANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00145 82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 11385555 161 VEWIWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFL 201
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
4-200 |
1.45e-122 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 351.32 E-value: 1.45e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 4 IRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00034 4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 84 ANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00034 84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163
|
170 180 190
....*....|....*....|....*....|....*..
gi 11385555 164 IWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFL 200
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
4-200 |
7.06e-121 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 347.05 E-value: 7.06e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 4 IRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00016 5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 84 ANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00016 85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQW 164
|
170 180 190
....*....|....*....|....*....|....*..
gi 11385555 164 IWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00016 165 LWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFL 201
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
4-200 |
1.14e-103 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 303.38 E-value: 1.14e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 4 IRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00224 5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 84 ANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00224 85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164
|
170 180 190
....*....|....*....|....*....|....*..
gi 11385555 164 IWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFL 201
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
4-200 |
1.18e-103 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 303.16 E-value: 1.18e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 4 IRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00022 3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 84 ANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00022 83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162
|
170 180 190
....*....|....*....|....*....|....*..
gi 11385555 164 IWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYL 199
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
4-200 |
4.68e-97 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 286.60 E-value: 4.68e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 4 IRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00053 5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 84 ANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00053 85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164
|
170 180 190
....*....|....*....|....*....|....*..
gi 11385555 164 IWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00053 165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIAL 201
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
9-200 |
2.14e-90 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 263.07 E-value: 2.14e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 9 PLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGAS 88
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 89 MFFICLYLHVGRGLYYGSYMYT--ETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWG 166
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190
....*....|....*....|....*....|....
gi 11385555 167 GFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFL 194
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
18-200 |
3.36e-82 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 241.90 E-value: 3.36e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 18 FIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 97
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 98 VGRGLYYGSYMYT--ETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS*DKATL 175
Cdd:pfam00033 81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*
gi 11385555 176 TRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFL 185
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
10-200 |
3.68e-79 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 241.00 E-value: 3.68e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 10 LMKIINDsFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASM 89
Cdd:MTH00033 8 LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 90 FFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS 169
Cdd:MTH00033 87 FFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFS 166
|
170 180 190
....*....|....*....|....*....|.
gi 11385555 170 *DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00033 167 VSNCTLNRFFSLHYLLPFVLVGLVLAHLLTL 197
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-200 |
9.19e-77 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 235.07 E-value: 9.19e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 1 MTNIRKSHPLMKIIND---------SFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICR 71
Cdd:COG1290 1 MSTTKKASGLADWLDErlplaslvrEHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 72 DVNYGWVLRYLHANGASMFFICLYLHVGRGLYYGSYMYTE--TWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNL 149
Cdd:COG1290 81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 11385555 150 LSAIPYIGTNLVEWIWGGFS*DKATLTRFFAFH-FLLPFII*AM*MVHLLFL 200
Cdd:COG1290 161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLL 212
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
12-200 |
3.67e-70 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 217.11 E-value: 3.67e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 12 KIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFF 91
Cdd:MTH00086 1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 92 ICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS*D 171
Cdd:MTH00086 81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160
|
170 180
....*....|....*....|....*....
gi 11385555 172 KATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFL 189
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
10-200 |
7.37e-47 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 157.07 E-value: 7.37e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 10 LMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASM 89
Cdd:MTH00046 1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 90 FFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS 169
Cdd:MTH00046 81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160
|
170 180 190
....*....|....*....|....*....|.
gi 11385555 170 *DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYL 191
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
33-198 |
5.65e-38 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 130.60 E-value: 5.65e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 33 FGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLHVGRGLYYGSYMYTE- 111
Cdd:PRK03735 44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 112 -TWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS*DKATLTRFFAFH-FLLPFII 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
|
....*....
gi 11385555 190 *AM*MVHLL 198
Cdd:PRK03735 204 AVLMLAHFL 212
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
88-200 |
4.80e-33 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 116.19 E-value: 4.80e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 88 SMFFICLYLHVGRGLYYGSYMYTE--TWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIW 165
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 11385555 166 GGFS*DKATLTRFFAFHF-LLPFII*AM*MVHLLFL 200
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLV 116
|
|
| petB |
CHL00070 |
cytochrome b6 |
24-198 |
1.62e-31 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 113.66 E-value: 1.62e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 24 PSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLHVGRGLY 103
Cdd:CHL00070 27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555 104 YGSYMYTE--TWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS*DKATLTRFFAF 181
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186
|
170
....*....|....*...
gi 11385555 182 H-FLLPFII*AM*MVHLL 198
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFL 204
|
|
|