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Conserved domains on  [gi|11385555|gb|AAG34860|]
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cytochrome b, partial (mitochondrion) [Myotis cf. punicus]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-200 1.92e-155

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 434.84  E-value: 1.92e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    1 MTNIRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   81 YLHANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 11385555  161 VEWIWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFL 200
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-200 1.92e-155

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 434.84  E-value: 1.92e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    1 MTNIRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   81 YLHANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 11385555  161 VEWIWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFL 200
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-200 2.14e-90

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 263.07  E-value: 2.14e-90
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   9 PLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGAS 88
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555  89 MFFICLYLHVGRGLYYGSYMYT--ETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWG 166
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190
                ....*....|....*....|....*....|....
gi 11385555 167 GFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFL 194
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-200 3.36e-82

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 241.90  E-value: 3.36e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    18 FIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    98 VGRGLYYGSYMYT--ETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS*DKATL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*
gi 11385555   176 TRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFL 185
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-200 9.19e-77

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 235.07  E-value: 9.19e-77
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   1 MTNIRKSHPLMKIIND---------SFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICR 71
Cdd:COG1290   1 MSTTKKASGLADWLDErlplaslvrEHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555  72 DVNYGWVLRYLHANGASMFFICLYLHVGRGLYYGSYMYTE--TWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNL 149
Cdd:COG1290  81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGL 160

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|..
gi 11385555 150 LSAIPYIGTNLVEWIWGGFS*DKATLTRFFAFH-FLLPFII*AM*MVHLLFL 200
Cdd:COG1290 161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLL 212
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-200 1.92e-155

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 434.84  E-value: 1.92e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    1 MTNIRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   81 YLHANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 11385555  161 VEWIWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFL 200
CYTB MTH00131
cytochrome b; Provisional
 1-200 3.25e-139

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 393.63  E-value: 3.25e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    1 MTNIRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   81 YLHANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 11385555  161 VEWIWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFL 200
CYTB MTH00119
cytochrome b; Provisional
 1-200 1.28e-138

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 391.96  E-value: 1.28e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    1 MTNIRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   81 YLHANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 11385555  161 VEWIWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFL 201
CYTB MTH00074
cytochrome b; Provisional
 1-200 4.02e-136

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 385.57  E-value: 4.02e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    1 MTNIRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   81 YLHANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 11385555  161 VEWIWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFL 201
CYTB MTH00191
cytochrome b; Provisional
 4-200 1.48e-131

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 373.48  E-value: 1.48e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    4 IRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   84 ANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 11385555  164 IWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFL 197
CYTB MTH00156
cytochrome b; Provisional
 11-200 1.51e-131

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 373.35  E-value: 1.51e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   11 MKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   91 FICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS* 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190
                 ....*....|....*....|....*....|
gi 11385555  171 DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFL 190
CYTB MTH00145
cytochrome b; Provisional
 1-200 9.79e-125

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 356.91  E-value: 9.79e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    1 MTNIRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   81 YLHANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 11385555  161 VEWIWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFL 201
CYTB MTH00034
cytochrome b; Validated
 4-200 1.45e-122

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 351.32  E-value: 1.45e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    4 IRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   84 ANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 11385555  164 IWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFL 200
CYTB MTH00016
cytochrome b; Validated
 4-200 7.06e-121

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 347.05  E-value: 7.06e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    4 IRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   84 ANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQW 164

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 11385555  164 IWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00016 165 LWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFL 201
CYTB MTH00224
cytochrome b; Provisional
 4-200 1.14e-103

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 303.38  E-value: 1.14e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    4 IRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   84 ANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 11385555  164 IWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFL 201
CYTB MTH00022
cytochrome b; Validated
 4-200 1.18e-103

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 303.16  E-value: 1.18e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    4 IRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   84 ANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 11385555  164 IWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYL 199
CYTB MTH00053
cytochrome b; Provisional
 4-200 4.68e-97

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 286.60  E-value: 4.68e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    4 IRKSHPLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   84 ANGASMFFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 11385555  164 IWGGFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00053 165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIAL 201
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-200 2.14e-90

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 263.07  E-value: 2.14e-90
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   9 PLMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGAS 88
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555  89 MFFICLYLHVGRGLYYGSYMYT--ETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWG 166
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190
                ....*....|....*....|....*....|....
gi 11385555 167 GFS*DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFL 194
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-200 3.36e-82

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 241.90  E-value: 3.36e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    18 FIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    98 VGRGLYYGSYMYT--ETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS*DKATL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*
gi 11385555   176 TRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFL 185
CYTB MTH00033
cytochrome b; Provisional
 10-200 3.68e-79

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 241.00  E-value: 3.68e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   10 LMKIINDsFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASM 89
Cdd:MTH00033   8 LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   90 FFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS 169
Cdd:MTH00033  87 FFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFS 166

                        170       180       190
                 ....*....|....*....|....*....|.
gi 11385555  170 *DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00033 167 VSNCTLNRFFSLHYLLPFVLVGLVLAHLLTL 197
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-200 9.19e-77

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 235.07  E-value: 9.19e-77
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   1 MTNIRKSHPLMKIIND---------SFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICR 71
Cdd:COG1290   1 MSTTKKASGLADWLDErlplaslvrEHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555  72 DVNYGWVLRYLHANGASMFFICLYLHVGRGLYYGSYMYTE--TWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNL 149
Cdd:COG1290  81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGL 160

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|..
gi 11385555 150 LSAIPYIGTNLVEWIWGGFS*DKATLTRFFAFH-FLLPFII*AM*MVHLLFL 200
Cdd:COG1290 161 FGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLL 212
CYTB MTH00086
cytochrome b; Provisional
 12-200 3.67e-70

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 217.11  E-value: 3.67e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   12 KIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   92 ICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS*D 171
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180
                 ....*....|....*....|....*....
gi 11385555  172 KATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFL 189
CYTB MTH00046
cytochrome b; Validated
 10-200 7.37e-47

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 157.07  E-value: 7.37e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   10 LMKIINDSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASM 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   90 FFICLYLHVGRGLYYGSYMYTETWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS 169
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190
                 ....*....|....*....|....*....|.
gi 11385555  170 *DKATLTRFFAFHFLLPFII*AM*MVHLLFL 200
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYL 191
PRK03735 PRK03735
cytochrome b6; Provisional
 33-198 5.65e-38

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 130.60  E-value: 5.65e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   33 FGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLHVGRGLYYGSYMYTE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555  112 -TWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS*DKATLTRFFAFH-FLLPFII 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203


                 ....*....
gi 11385555  190 *AM*MVHLL 198
Cdd:PRK03735 204 AVLMLAHFL 212
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-200 4.80e-33

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 116.19  E-value: 4.80e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555    88 SMFFICLYLHVGRGLYYGSYMYTE--TWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 11385555   166 GGFS*DKATLTRFFAFHF-LLPFII*AM*MVHLLFL 200
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLV 116
petB CHL00070
cytochrome b6
 24-198 1.62e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 113.66  E-value: 1.62e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555   24 PSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFNSVTHICRDVNYGWVLRYLHANGASMFFICLYLHVGRGLY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11385555  104 YGSYMYTE--TWNIGVILLFT*MATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFS*DKATLTRFFAF 181
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170
                 ....*....|....*...
gi 11385555  182 H-FLLPFII*AM*MVHLL 198
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFL 204
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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