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Conserved domains on  [gi|1134776181]
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Chain L, PHA granule-associated protein

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phasin_2 super family cl11491
Phasin protein; This entry describes a group of small proteins found associated with ...
 4-113 5.97e-47

Phasin protein; This entry describes a group of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins.


The actual alignment was detected with superfamily member TIGR02809:

Pssm-ID: 472203  Cd Length: 110  Bit Score: 146.67  E-value: 5.97e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134776181   4 DVIKSFTEQMQGFAAPLTRYNQLLASNIEQLTRLQLASANAYAELGLNQLQAVSKVQDTQSLAALGTVQLETASQLSRQM 83
Cdd:TIGR02809   1 EVFKTFSEQTEKFAAPYTKFNKLLAKNVEQLTELQLAAARTYSELGLNQLKAAGEVKDAQSLAAFNTQQLETLSKLSQQM 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1134776181  84 LDDIQKLSALGQQFKEELDVLTADGIKKST 113
Cdd:TIGR02809  81 MDDSKKLNTLAQQFKDDVEALAAENIKKVT 110
 
Name Accession Description Interval E-value
phasin_3 TIGR02809
phasin family protein; Members of this protein family are encoded in polyhydroxyalkanoic acid ...
 4-113 5.97e-47

phasin family protein; Members of this protein family are encoded in polyhydroxyalkanoic acid storage system regions in Vibrio, Photobacterium profundum SS9, Acinetobacter sp., Aeromonas hydrophila, and several species of Vibrio. Members appear distantly related to the phasin family proteins modeled by TIGR01841 and TIGR01985.


Pssm-ID: 131856  Cd Length: 110  Bit Score: 146.67  E-value: 5.97e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134776181   4 DVIKSFTEQMQGFAAPLTRYNQLLASNIEQLTRLQLASANAYAELGLNQLQAVSKVQDTQSLAALGTVQLETASQLSRQM 83
Cdd:TIGR02809   1 EVFKTFSEQTEKFAAPYTKFNKLLAKNVEQLTELQLAAARTYSELGLNQLKAAGEVKDAQSLAAFNTQQLETLSKLSQQM 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1134776181  84 LDDIQKLSALGQQFKEELDVLTADGIKKST 113
Cdd:TIGR02809  81 MDDSKKLNTLAQQFKDDVEALAAENIKKVT 110
Phasin_2 pfam09361
Phasin protein; This entry describes a group of small proteins found associated with ...
 17-101 1.07e-06

Phasin protein; This entry describes a group of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins.


Pssm-ID: 462770  Cd Length: 90  Bit Score: 43.34  E-value: 1.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134776181  17 AAPLTRYNQLLASNIEQLTRLQLASANAYAELGLNQLQAVSKVQDTQSLAALgtvQLETASQLSRQMLDDIQKLSALGQQ 96
Cdd:pfam09361   3 LEALVALASLAFKGAEKLAALNLEAARASLEESLAAAKALAGAKDPQELFEL---QSELARPQFEKAVAYARKLYELAAK 79


                  ....*
gi 1134776181  97 FKEEL 101
Cdd:pfam09361  80 TQAEA 84
 
Name Accession Description Interval E-value
phasin_3 TIGR02809
phasin family protein; Members of this protein family are encoded in polyhydroxyalkanoic acid ...
 4-113 5.97e-47

phasin family protein; Members of this protein family are encoded in polyhydroxyalkanoic acid storage system regions in Vibrio, Photobacterium profundum SS9, Acinetobacter sp., Aeromonas hydrophila, and several species of Vibrio. Members appear distantly related to the phasin family proteins modeled by TIGR01841 and TIGR01985.


Pssm-ID: 131856  Cd Length: 110  Bit Score: 146.67  E-value: 5.97e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134776181   4 DVIKSFTEQMQGFAAPLTRYNQLLASNIEQLTRLQLASANAYAELGLNQLQAVSKVQDTQSLAALGTVQLETASQLSRQM 83
Cdd:TIGR02809   1 EVFKTFSEQTEKFAAPYTKFNKLLAKNVEQLTELQLAAARTYSELGLNQLKAAGEVKDAQSLAAFNTQQLETLSKLSQQM 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1134776181  84 LDDIQKLSALGQQFKEELDVLTADGIKKST 113
Cdd:TIGR02809  81 MDDSKKLNTLAQQFKDDVEALAAENIKKVT 110
Phasin_2 pfam09361
Phasin protein; This entry describes a group of small proteins found associated with ...
 17-101 1.07e-06

Phasin protein; This entry describes a group of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins.


Pssm-ID: 462770  Cd Length: 90  Bit Score: 43.34  E-value: 1.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134776181  17 AAPLTRYNQLLASNIEQLTRLQLASANAYAELGLNQLQAVSKVQDTQSLAALgtvQLETASQLSRQMLDDIQKLSALGQQ 96
Cdd:pfam09361   3 LEALVALASLAFKGAEKLAALNLEAARASLEESLAAAKALAGAKDPQELFEL---QSELARPQFEKAVAYARKLYELAAK 79


                  ....*
gi 1134776181  97 FKEEL 101
Cdd:pfam09361  80 TQAEA 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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