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Conserved domains on  [gi|1134676883|gb|APX42557|]
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DNA-dependemt RNA polymerase beta subunit, partial [Pasteurellaceae bacterium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ricin_B_lectin super family cl47023
Ricin-type beta-trefoil lectin domain;
1-160 1.82e-123

Ricin-type beta-trefoil lectin domain;


The actual alignment was detected with superfamily member PRK00405:

Pssm-ID: 481363 [Multi-domain]  Cd Length: 1112  Bit Score: 372.51  E-value: 1.82e-123
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883    1 MDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPYRKV 80
Cdd:PRK00405   436 MDQTNPLSELTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYARVNEYGFIETPYRKV 515

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883   81 IDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARgERGESGLYKPEDIHYMDVSTQQVVSVAAALIPFLEH 160
Cdd:PRK00405   516 VDGKVTDEIVYLTADEEDNYVIAQANAPLDEDGRFVDELVTAR-YKGEFVLVPPEEVDYMDVSPKQVVSVAASLIPFLEH 594
 
Name Accession Description Interval E-value
rpoB PRK00405
DNA-directed RNA polymerase subunit beta; Reviewed
 1-160 1.82e-123

DNA-directed RNA polymerase subunit beta; Reviewed


Pssm-ID: 234749 [Multi-domain]  Cd Length: 1112  Bit Score: 372.51  E-value: 1.82e-123
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883    1 MDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPYRKV 80
Cdd:PRK00405   436 MDQTNPLSELTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYARVNEYGFIETPYRKV 515

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883   81 IDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARgERGESGLYKPEDIHYMDVSTQQVVSVAAALIPFLEH 160
Cdd:PRK00405   516 VDGKVTDEIVYLTADEEDNYVIAQANAPLDEDGRFVDELVTAR-YKGEFVLVPPEEVDYMDVSPKQVVSVAASLIPFLEH 594
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
 1-160 1.10e-104

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 320.90  E-value: 1.10e-104
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883    1 MDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPYRKV 80
Cdd:COG0085    375 MDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLALYARVNEYGFIETPYRKV 454

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883   81 IDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARgERGESGLYKPEDIHYMDVSTQQVVSVAAALIPFLEH 160
Cdd:COG0085    455 ENGKVTDEIEYLTADEEENYYIAQANAPLDEDGNFLEERVLVR-YRGEEVLVPPEEVDYMDVSPKQIVSVATSLIPFLEH 533
rpoB TIGR02013
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit ...
 1-160 3.36e-100

DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit. [Transcription, DNA-dependent RNA polymerase]


Pssm-ID: 273928 [Multi-domain]  Cd Length: 1065  Bit Score: 310.06  E-value: 3.36e-100
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883    1 MDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPYRKV 80
Cdd:TIGR02013  391 MDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTYARVNEYGFIETPYRKV 470

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883   81 IDGQV--TEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARgERGESGLYKPEDIHYMDVSTQQVVSVAAALIPFL 158
Cdd:TIGR02013  471 KDGKVvvTDEIDYLTADEEDNYVIAQANAPLDENGRFVEDLVVAR-YRGEITLVSPDQVDYMDVSPKQVVSVAASLIPFL 549


                   ..
gi 1134676883  159 EH 160
Cdd:TIGR02013  550 EH 551
RNA_pol_B_RPB2 cd00653
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ...
 1-160 1.46e-46

RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.


Pssm-ID: 238353 [Multi-domain]  Cd Length: 866  Bit Score: 161.58  E-value: 1.46e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883   1 MDQNNPLSEVTHKRRISAlgpGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNdyGFLETPYRKV 80
Cdd:cd00653   317 LDRLNPLSELSHKRRISS---LGLFRERKGFEVRDLHPSHWGRICPIETPEGENCGLVKNLALMARIS--GRIERPYRIV 391

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883  81 IdgqvteeieylsaideanyiiaqansnldennrftdafvtargergesglykpEDIHYMDVSTQQVVSVAAALIPFLEH 160
Cdd:cd00653   392 E-----------------------------------------------------KEVTHIEISPSQILSVAASLIPFPEH 418
RNA_pol_Rpb2_3 pfam04565
RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of ...
 1-66 1.44e-37

RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site.


Pssm-ID: 428011 [Multi-domain]  Cd Length: 67  Bit Score: 123.02  E-value: 1.44e-37
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1134676883   1 MDQNNPLSEVTHKRRISAlGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFAR 66
Cdd:pfam04565   3 LDRTNYLSTLSHLRRVNS-PRGGLFREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKHLALYAR 67
 
Name Accession Description Interval E-value
rpoB PRK00405
DNA-directed RNA polymerase subunit beta; Reviewed
 1-160 1.82e-123

DNA-directed RNA polymerase subunit beta; Reviewed


Pssm-ID: 234749 [Multi-domain]  Cd Length: 1112  Bit Score: 372.51  E-value: 1.82e-123
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883    1 MDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPYRKV 80
Cdd:PRK00405   436 MDQTNPLSELTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYARVNEYGFIETPYRKV 515

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883   81 IDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARgERGESGLYKPEDIHYMDVSTQQVVSVAAALIPFLEH 160
Cdd:PRK00405   516 VDGKVTDEIVYLTADEEDNYVIAQANAPLDEDGRFVDELVTAR-YKGEFVLVPPEEVDYMDVSPKQVVSVAASLIPFLEH 594
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
 1-160 1.10e-104

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 320.90  E-value: 1.10e-104
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883    1 MDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPYRKV 80
Cdd:COG0085    375 MDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLALYARVNEYGFIETPYRKV 454

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883   81 IDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARgERGESGLYKPEDIHYMDVSTQQVVSVAAALIPFLEH 160
Cdd:COG0085    455 ENGKVTDEIEYLTADEEENYYIAQANAPLDEDGNFLEERVLVR-YRGEEVLVPPEEVDYMDVSPKQIVSVATSLIPFLEH 533
rpoB TIGR02013
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit ...
 1-160 3.36e-100

DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit. [Transcription, DNA-dependent RNA polymerase]


Pssm-ID: 273928 [Multi-domain]  Cd Length: 1065  Bit Score: 310.06  E-value: 3.36e-100
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883    1 MDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPYRKV 80
Cdd:TIGR02013  391 MDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTYARVNEYGFIETPYRKV 470

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883   81 IDGQV--TEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARgERGESGLYKPEDIHYMDVSTQQVVSVAAALIPFL 158
Cdd:TIGR02013  471 KDGKVvvTDEIDYLTADEEDNYVIAQANAPLDENGRFVEDLVVAR-YRGEITLVSPDQVDYMDVSPKQVVSVAASLIPFL 549


                   ..
gi 1134676883  159 EH 160
Cdd:TIGR02013  550 EH 551
PRK14844 PRK14844
DNA-directed RNA polymerase subunit beta/beta';
1-160 3.87e-73

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 173305 [Multi-domain]  Cd Length: 2836  Bit Score: 237.98  E-value: 3.87e-73
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883    1 MDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPYRKV 80
Cdd:PRK14844   536 MDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIYARINKYGFIESPYRKV 615

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883   81 IDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARgERGESGLYKPEDIHYMDVSTQQVVSVAAALIPFLEH 160
Cdd:PRK14844   616 VNRVVTDQIEYLSAIDEGLYYIADTSAKLDENNCFVDDMLYCR-YAGSFVMVSSDQVSYIDVSPKQVISVAASLIPFLEN 694
PRK09603 PRK09603
DNA-directed RNA polymerase subunit beta/beta';
1-160 5.07e-69

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 181983 [Multi-domain]  Cd Length: 2890  Bit Score: 225.96  E-value: 5.07e-69
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883    1 MDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPYRKV 80
Cdd:PRK09603   529 MDQTNPLSEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGFIEAPYKKV 608

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883   81 IDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARGErGESGLYKPEDIHYMDVSTQQVVSVAAALIPFLEH 160
Cdd:PRK09603   609 VDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVE-GEIVLNEKSKVTLMDLSSSMLVGVAASLIPFLEH 687
rpoB CHL00207
RNA polymerase beta subunit; Provisional
 1-160 9.64e-61

RNA polymerase beta subunit; Provisional


Pssm-ID: 214397 [Multi-domain]  Cd Length: 1077  Bit Score: 202.24  E-value: 9.64e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883    1 MDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPYRKV 80
Cdd:CHL00207   370 MDQTNPLSELTHKRRISILGPGGLDKDRISFAVRDIHPSHYGRICPIETPEGPNCGLIGSLATNARINKFGFIETPFYKV 449

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883   81 IDGQV--TEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARgERGESGLYKPEDIHYMDVSTQQVVSVAAALIPFL 158
Cdd:CHL00207   450 INGKVkkFGNPIYLTADSEDLYRIAPNDINLNKNNYFKKNIIPVR-YKQEFKTVNPSKVDFIAISPIQVFSIAESLIPFL 528


                   ..
gi 1134676883  159 EH 160
Cdd:CHL00207   529 EH 530
rpoB CHL00001
RNA polymerase beta subunit
 1-160 1.90e-57

RNA polymerase beta subunit


Pssm-ID: 214330 [Multi-domain]  Cd Length: 1070  Bit Score: 192.81  E-value: 1.90e-57
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883    1 MDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNDYGFLETPYRKV 80
Cdd:CHL00001   378 LDQTNPLTEIVHGRKLSSLGPGGLTGRTASFRVRDIHPSHYGRICPIDTSEGINAGLIGSLAIHARIGHWGSLESPFYEI 457

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883   81 IDGQVTEEIEYLSAIDEANYIIAQANSnLDENNRFTDAFVTARGERGESGLYKPEDIHYMDVSTQQVVSVAAALIPFLEH 160
Cdd:CHL00001   458 SERSKEERMVYLSPSEDEYYMIAAGNS-LALNQGIQEEQVVPARYRQEFLTIAWEQIHLRSIFPFQYFSIGASLIPFLEH 536
RNA_pol_B_RPB2 cd00653
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ...
 1-160 1.46e-46

RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.


Pssm-ID: 238353 [Multi-domain]  Cd Length: 866  Bit Score: 161.58  E-value: 1.46e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883   1 MDQNNPLSEVTHKRRISAlgpGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFARTNdyGFLETPYRKV 80
Cdd:cd00653   317 LDRLNPLSELSHKRRISS---LGLFRERKGFEVRDLHPSHWGRICPIETPEGENCGLVKNLALMARIS--GRIERPYRIV 391

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1134676883  81 IdgqvteeieylsaideanyiiaqansnldennrftdafvtargergesglykpEDIHYMDVSTQQVVSVAAALIPFLEH 160
Cdd:cd00653   392 E-----------------------------------------------------KEVTHIEISPSQILSVAASLIPFPEH 418
RNA_pol_Rpb2_3 pfam04565
RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of ...
 1-66 1.44e-37

RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site.


Pssm-ID: 428011 [Multi-domain]  Cd Length: 67  Bit Score: 123.02  E-value: 1.44e-37
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1134676883   1 MDQNNPLSEVTHKRRISAlGPGGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFAR 66
Cdd:pfam04565   3 LDRTNYLSTLSHLRRVNS-PRGGLFREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKHLALYAR 67
RNA_pol_Rpb2_45 pfam10385
RNA polymerase beta subunit external 1 domain; RNA polymerases catalyze the DNA-dependent ...
 77-143 1.39e-33

RNA polymerase beta subunit external 1 domain; RNA polymerases catalyze the DNA-dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared with three in eukaryotes (not including mitochondrial or chloroplast polymerases). This domain in prokaryotes spans the gap between domains 4 and 5 of the yeast protein. It is also known as the external 1 region of the polymerase and is bound in association with the external 2 region.


Pssm-ID: 463067 [Multi-domain]  Cd Length: 66  Bit Score: 112.84  E-value: 1.39e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1134676883  77 YRKVIDGQVTEEIEYLSAIDEANYIIAQANSNLDENNRFTDAFVTARgERGESGLYKPEDIHYMDVS 143
Cdd:pfam10385   1 YRKVEDGKVTDEIVYLTADEEDGYVIAQANAPLDEDGRFVDERVSAR-YRGEFPLVPPEEVDYMDVS 66
PRK08565 PRK08565
DNA-directed RNA polymerase subunit B; Provisional
 1-65 1.23e-17

DNA-directed RNA polymerase subunit B; Provisional


Pssm-ID: 236291 [Multi-domain]  Cd Length: 1103  Bit Score: 78.85  E-value: 1.23e-17
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1134676883    1 MDQNNPLSEVTHKRRIsaLGPggLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSLSAFA 65
Cdd:PRK08565   406 LDRTNYLSTLSHLRRV--VSP--LSRGQPHFEARDLHGTQWGRICPFETPEGPNCGLVKNLALMA 466
PRK09606 PRK09606
DNA-directed RNA polymerase subunit B''; Validated
 1-61 3.40e-15

DNA-directed RNA polymerase subunit B''; Validated


Pssm-ID: 236587 [Multi-domain]  Cd Length: 494  Bit Score: 71.52  E-value: 3.40e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1134676883   1 MDQNNPLSEVTHKRRISAlgpgGLTRERAGFEVRDVHNTHYGRLCPIETPEGPNIGLINSL 61
Cdd:PRK09606  409 LDRTDYMATLSHLRRVVS----PLSRSQPHFEARDLHPTQWGRICPSETPEGPNCGLVKNF 465
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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