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Conserved domains on  [gi|1131110018|gb|APU54022|]
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NADH dehydrogenase subunit 1, partial (mitochondrion) [Corilla erronea]

Protein Classification

complex I subunit 1 family protein( domain architecture ID 103)

complex I subunit 1 family protein similar to NADH dehydrogenase subunit 1, which is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

EC:  7.1.1.-
Gene Ontology:  GO:0016655|GO:0016020
PubMed:  23417064|24059520
SCOP:  4005664

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06076 super family cl00469
NADH-quinone oxidoreductase subunit NuoH;
1-143 2.47e-46

NADH-quinone oxidoreductase subunit NuoH;


The actual alignment was detected with superfamily member MTH00143:

Pssm-ID: 469782  Cd Length: 307  Bit Score: 152.33  E-value: 2.47e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   1 LSGLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLYGVLLFLCISALNSYFTILAGW 80
Cdd:MTH00143   43 LMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGW 122

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1131110018  81 SSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMSWYTALKAFPII---LVYPFLCLMWYV 143
Cdd:MTH00143  123 SSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSVwlgFLMFPVFLMWFV 188
 
Name Accession Description Interval E-value
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 1-143 2.47e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 152.33  E-value: 2.47e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   1 LSGLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLYGVLLFLCISALNSYFTILAGW 80
Cdd:MTH00143   43 LMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGW 122

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1131110018  81 SSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMSWYTALKAFPII---LVYPFLCLMWYV 143
Cdd:MTH00143  123 SSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSVwlgFLMFPVFLMWFV 188
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 3-120 1.32e-32

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 117.15  E-value: 1.32e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   3 GLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNY--VLYGVLLFLCISALNSYFTILAGW 80
Cdd:COG1005    53 GLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFGPGLVLadLNVGLLYVLAVSSLGVYGIILAGW 132

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1131110018  81 SSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMS 120
Cdd:COG1005   133 ASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLN 172
NADHdh pfam00146
NADH dehydrogenase;
3-120 2.96e-32

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 115.65  E-value: 2.96e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   3 GLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLY--GVLLFLCISALNSYFTILAGW 80
Cdd:pfam00146  40 GLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFGPGLVLADLnvGILYILALSSLGVYGILLAGW 119

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1131110018  81 SSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMS 120
Cdd:pfam00146 120 ASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLS 159
 
Name Accession Description Interval E-value
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 1-143 2.47e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 152.33  E-value: 2.47e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   1 LSGLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLYGVLLFLCISALNSYFTILAGW 80
Cdd:MTH00143   43 LMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGW 122

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1131110018  81 SSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMSWYTALKAFPII---LVYPFLCLMWYV 143
Cdd:MTH00143  123 SSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSVwlgFLMFPVFLMWFV 188
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-143 9.04e-39

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 132.59  E-value: 9.04e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   1 LSGLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLYGVLLFLCISALNSYFTILAGW 80
Cdd:MTH00193   44 FMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGW 123

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1131110018  81 SSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMSWYTAL---KAFPIILVYPFLCLMWYV 143
Cdd:MTH00193  124 SSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMnyqKYIWFIFFSFPLFLIWFV 189
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 1-143 5.71e-35

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 122.84  E-value: 5.71e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   1 LSGLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLYGVLLFLCISALNSYFTILAGW 80
Cdd:MTH00225   43 LMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGW 122

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1131110018  81 SSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMSWY---TALKAFPIILVYPFLCLMWYV 143
Cdd:MTH00225  123 SSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFdfsYNQKYFWFMFVLFPLFFCWMI 188
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 3-120 1.32e-32

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 117.15  E-value: 1.32e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   3 GLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNY--VLYGVLLFLCISALNSYFTILAGW 80
Cdd:COG1005    53 GLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFGPGLVLadLNVGLLYVLAVSSLGVYGIILAGW 132

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1131110018  81 SSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMS 120
Cdd:COG1005   133 ASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLN 172
NADHdh pfam00146
NADH dehydrogenase;
3-120 2.96e-32

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 115.65  E-value: 2.96e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   3 GLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLY--GVLLFLCISALNSYFTILAGW 80
Cdd:pfam00146  40 GLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFGPGLVLADLnvGILYILALSSLGVYGILLAGW 119

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1131110018  81 SSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMS 120
Cdd:pfam00146 120 ASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLS 159
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
3-120 2.17e-31

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 113.75  E-value: 2.17e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   3 GLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVL--YGVLLFLCISALNSYFTILAGW 80
Cdd:PRK06076   54 GLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIPFGPELVIADlnVGILYILAISSLGVYGVILAGW 133

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1131110018  81 SSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMS 120
Cdd:PRK06076  134 ASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLN 173
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 1-143 7.10e-31

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 112.14  E-value: 7.10e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   1 LSGLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLYGVLLFLCISALNSYFTILAGW 80
Cdd:MTH00195   44 PYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGW 123

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1131110018  81 SSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMSWYTALKA---FPIILVYPFLCLMWYV 143
Cdd:MTH00195  124 ASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISqgfSWVILLCPPISFMWYV 189
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 1-143 9.11e-31

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 112.18  E-value: 9.11e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   1 LSGLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLYGVLLFLCISALNSYFTILAGW 80
Cdd:MTH00010   45 LAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGW 124

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1131110018  81 SSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMSWYTAL--KAFPIILVYPFLCLMWYV 143
Cdd:MTH00010  125 TSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIImsQYSWILLMIIPLTVSWFI 189
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 3-143 1.75e-30

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 111.16  E-value: 1.75e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   3 GLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLYGVLLFLCISALNSYFTILAGWSS 82
Cdd:MTH00218   46 GLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWAS 125

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1131110018  83 NSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMSWYT---ALKAFPIILVYPFLCLMWYV 143
Cdd:MTH00218  126 NSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEGfnlTQETIWLLIPEWPLALMWFI 189
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 2-143 2.01e-28

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 106.24  E-value: 2.01e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   2 SGLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLYGVLLFLCISALNSYFTILAGWS 81
Cdd:MTH00071   48 MGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWA 127

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1131110018  82 SNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMSWY----TALKAFPIILVYPfLCLMWYV 143
Cdd:MTH00071  128 SNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGFSLMnfntTQEFMWLIIPAWP-MAAMWFI 192
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-120 1.80e-26

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 100.96  E-value: 1.80e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   1 LSGLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSE--TYNYVLYGVLLFLCISALNSYFTILA 78
Cdd:MTH00216   48 VYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIVWGVIPYERgvLISDFKIGILYILAISSISVYAILMS 127

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1131110018  79 GWSSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMS 120
Cdd:MTH00216  128 GWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLS 169
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-143 2.66e-26

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 100.36  E-value: 2.66e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   3 GLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLYGVLLFLCISALNSYFTILAGWSS 82
Cdd:MTH00111   49 GLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWAS 128

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1131110018  83 NSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMSWYT-ALKAFPIILVYPF--LCLMWYV 143
Cdd:MTH00111  129 NSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQTlATTQEPLWLIFSSwpLAMMWYI 192
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 3-120 1.08e-25

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 99.03  E-value: 1.08e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   3 GLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSEtyNYVL----YGVLLFLCISALNSYFTILA 78
Cdd:MTH00054   46 GLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWGVIPYGE--GVVLsdlgIGILYLFAVSSISVYAVLMS 123

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1131110018  79 GWSSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMS 120
Cdd:MTH00054  124 GWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLN 165
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 3-143 5.88e-24

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 94.31  E-value: 5.88e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   3 GLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLYGVLLFLCISALNSYFTILAGWSS 82
Cdd:MTH00104   44 GLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWAS 123

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1131110018  83 NSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMSWYTALKA----FPIILVYPfLCLMWYV 143
Cdd:MTH00104  124 NSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTqehlWLIFPSWP-LAMMWFI 187
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 3-143 1.08e-23

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 93.50  E-value: 1.08e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   3 GLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLYGVLLFLCISALNSYFTILAGWSS 82
Cdd:MTH00040   48 GLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWAS 127

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1131110018  83 NSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMSWYTALKA----FPIILVYPfLCLMWYV 143
Cdd:MTH00040  128 NSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSISNSqngsWLLFPCLP-LFYIWFI 191
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 3-143 1.32e-22

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 90.82  E-value: 1.32e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   3 GLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLYGVLLFLCISALNSYFTILAGWSS 82
Cdd:MTH00134   50 GLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWAS 129

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1131110018  83 NSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMSWYT---ALKAFPIILVYPFLCLMWYV 143
Cdd:MTH00134  130 NSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTfntAQESIWLLLPAWPLAAMWYI 193
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 3-140 3.51e-22

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 88.80  E-value: 3.51e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   3 GLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLYGVLLFLCISALNSYFTILAGWSS 82
Cdd:MTH00090   40 GVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVS 119

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1131110018  83 NSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMSWYTALKAFPIILVYPFLCLM 140
Cdd:MTH00090  120 KSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSSFSLSLFVIYLPFLIMI 177
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 3-120 1.93e-21

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 87.77  E-value: 1.93e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   3 GLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSET--YNYVLYGVLLFLCISALNSYFTILAGW 80
Cdd:MTH00029   51 GLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIVTMDQGvfLSDLDVGVLYFLAISSLSVYAILLSGW 130

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1131110018  81 SSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMS 120
Cdd:MTH00029  131 ASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLN 170
ndhA CHL00032
NADH dehydrogenase subunit 1
 3-120 8.52e-17

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 74.99  E-value: 8.52e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   3 GLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSetYNYVL----YGVLLFLCISALNSYFTILA 78
Cdd:CHL00032   71 GILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFG--YHLVLadlsIGVFLWIAISSIAPIGLLMS 148

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1131110018  79 GWSSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMS 120
Cdd:CHL00032  149 GYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLS 190
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 1-143 2.36e-09

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 53.77  E-value: 2.36e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   1 LSGLAQPLADALKLFLKEMILPKMSNYLVYLTVPVISLSVALFIWTLLPSSETYNYVLYGVLLFLCISALNSYFTILAGW 80
Cdd:MTH00058   43 IVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGW 122

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1131110018  81 SSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMSWYTALKAF-PIILVYPFLCLMWYV 143
Cdd:MTH00058  123 GSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGwLSVLLFPLIYILWLV 186
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
3-120 2.54e-08

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 50.95  E-value: 2.54e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1131110018   3 GLAQPLADALKLFLKEMILPKMSNYLVYLTvPVISLSVALFIWTLLPSSETYNYVLYG--VLLFLCISALNSYFTILAGW 80
Cdd:COG0650    39 PILQPYYDLLKLLRKETVVPETASWLFRAA-PYVALAAMLLAALLVPVLTTGPPLSFSgdLIVLVYLLALARFFLALAGL 117

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1131110018  81 SSNSKYSFLGGVRAAAQAISYEVTLMLILITPVLLIMSMS 120
Cdd:COG0650   118 DSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTS 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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