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Conserved domains on  [gi|1125458659|gb|OLD83709|]
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hypothetical protein AUF67_00100 [Acidobacteria bacterium 13_1_20CM_58_21]

Protein Classification

CsbD family protein( domain architecture ID 10007103)

uncharacterized protein related to Bacillus subtilis stress response protein CsbD

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
yjbJ COG3237
Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];
1-65 1.78e-22

Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];


:

Pssm-ID: 442469 [Multi-domain]  Cd Length: 65  Bit Score: 81.37  E-value: 1.78e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1125458659  1 MNWDQIEGKWKEMKGQLREKWGNLTEDDLEMIAGRRDQLIGRLQIRYGIANEEASRQVDEFVSSL 65
Cdd:COG3237    1 MNKDKIKGKWKQLKGKAKEAWGKLTDDDLLEAEGKADQLKGKLQEAYGDAKDAAKKAVDDWKDKL 65
 
Name Accession Description Interval E-value
yjbJ COG3237
Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];
1-65 1.78e-22

Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];


Pssm-ID: 442469 [Multi-domain]  Cd Length: 65  Bit Score: 81.37  E-value: 1.78e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1125458659  1 MNWDQIEGKWKEMKGQLREKWGNLTEDDLEMIAGRRDQLIGRLQIRYGIANEEASRQVDEFVSSL 65
Cdd:COG3237    1 MNKDKIKGKWKQLKGKAKEAWGKLTDDDLLEAEGKADQLKGKLQEAYGDAKDAAKKAVDDWKDKL 65
PRK10428 PRK10428
hypothetical protein; Provisional
 1-61 1.41e-17

hypothetical protein; Provisional


Pssm-ID: 182452  Cd Length: 69  Bit Score: 69.14  E-value: 1.41e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1125458659  1 MNWDQIEGKWKEMKGQLREKWGNLTEDDLEMIAGRRDQLIGRLQIRYGIANEEASRQVDEF 61
Cdd:PRK10428   1 MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDW 61
CsbD pfam05532
CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by ...
 4-56 4.71e-14

CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.


Pssm-ID: 428512  Cd Length: 53  Bit Score: 59.83  E-value: 4.71e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1125458659  4 DQIEGKWKEMKGQLREKWGNLTEDDLEMIAGRRDQLIGRLQIRYGIANEEASR 56
Cdd:pfam05532  1 DKIEGKAEQVKGKVKEAWGKATGDEKLEAEGKADQLKGKAQQKYGDAKDAAKD 53
 
Name Accession Description Interval E-value
yjbJ COG3237
Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];
1-65 1.78e-22

Uncharacterized conserved protein YjbJ, UPF0337 family [Function unknown];


Pssm-ID: 442469 [Multi-domain]  Cd Length: 65  Bit Score: 81.37  E-value: 1.78e-22
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1125458659  1 MNWDQIEGKWKEMKGQLREKWGNLTEDDLEMIAGRRDQLIGRLQIRYGIANEEASRQVDEFVSSL 65
Cdd:COG3237    1 MNKDKIKGKWKQLKGKAKEAWGKLTDDDLLEAEGKADQLKGKLQEAYGDAKDAAKKAVDDWKDKL 65
PRK10428 PRK10428
hypothetical protein; Provisional
 1-61 1.41e-17

hypothetical protein; Provisional


Pssm-ID: 182452  Cd Length: 69  Bit Score: 69.14  E-value: 1.41e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1125458659  1 MNWDQIEGKWKEMKGQLREKWGNLTEDDLEMIAGRRDQLIGRLQIRYGIANEEASRQVDEF 61
Cdd:PRK10428   1 MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDW 61
CsbD pfam05532
CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by ...
 4-56 4.71e-14

CsbD-like; CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.


Pssm-ID: 428512  Cd Length: 53  Bit Score: 59.83  E-value: 4.71e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1125458659  4 DQIEGKWKEMKGQLREKWGNLTEDDLEMIAGRRDQLIGRLQIRYGIANEEASR 56
Cdd:pfam05532  1 DKIEGKAEQVKGKVKEAWGKATGDEKLEAEGKADQLKGKAQQKYGDAKDAAKD 53
PqqD pfam05402
Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ ...
 29-66 5.82e-03

Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.


Pssm-ID: 461641  Cd Length: 65  Bit Score: 31.68  E-value: 5.82e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 1125458659 29 LEMIAGRR--DQLIGRLQIRYGIANEEASRQVDEFVSSLK 66
Cdd:pfam05402 21 WELLDGRTtvEEIVAALAEEYDVDEEEAEADVEAFLEQLR 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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