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Conserved domains on  [gi|1125076503|gb|OLA39652|]
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hypothetical protein BHW35_00275 [Firmicutes bacterium CAG:176_63_11]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YicC super family cl43454
Uncharacterized stationary-phase protein YicC, UPF0701 family [Function unknown];
1-201 2.32e-49

Uncharacterized stationary-phase protein YicC, UPF0701 family [Function unknown];


The actual alignment was detected with superfamily member COG1561:

Pssm-ID: 441169 [Multi-domain]  Cd Length: 292  Bit Score: 164.52  E-value: 2.32e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503   1 MKSMTGFGRAEEYSGELQcgFKIEISSINKKQFDLKISMPRELMPLEMELRAFVAERIARG--SLTLRIEPLMQTGQPMQ 78
Cdd:COG1561     2 IRSMTGFGRAEAETDGGT--LTVEIRSVNHRYLDLSLRLPRELRALEPEIRELIRKRLSRGkvEVSLSLERAGAAAAALR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503  79 nADFSKAELILAAAREFQEKHHLSGEITISDLLAIPDAITFQAVDLSDEKSMEFLKKLLSSAIDGLIRMRTLEGANLQKD 158
Cdd:COG1561    80 -INEALLKAYLEALKELAEELGLAGPISLDDLLRLPGVLETEEEEEDLEELWAALLAALDEALDDLVAMREREGAALAAD 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1125076503 159 ILERIDTMEAIVNEIQPLAEALPEIQKQRLYKHLKEFDLPVDA 201
Cdd:COG1561   159 LLERLDAIEELVAEIEERAPEVVEAYRERLRERLEELLEGVEL 201
PRK11749 super family cl46914
dihydropyrimidine dehydrogenase subunit A; Provisional
 194-276 9.53e-43

dihydropyrimidine dehydrogenase subunit A; Provisional


The actual alignment was detected with superfamily member PRK12831:

Pssm-ID: 481254 [Multi-domain]  Cd Length: 464  Bit Score: 151.71  E-value: 9.53e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 194 EFDLPVDAVIMSLGTSPNPLIKSTTKGLEVNKKGGIIVNEE-GLTSRQAVYAGGDAVTGAATVILAMGAGKLGAKSIDEY 272
Cdd:PRK12831  380 EFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEEtGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDEY 459


                  ....
gi 1125076503 273 LSAK 276
Cdd:PRK12831  460 LSKK 463
 
Name Accession Description Interval E-value
YicC COG1561
Uncharacterized stationary-phase protein YicC, UPF0701 family [Function unknown];
1-201 2.32e-49

Uncharacterized stationary-phase protein YicC, UPF0701 family [Function unknown];


Pssm-ID: 441169 [Multi-domain]  Cd Length: 292  Bit Score: 164.52  E-value: 2.32e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503   1 MKSMTGFGRAEEYSGELQcgFKIEISSINKKQFDLKISMPRELMPLEMELRAFVAERIARG--SLTLRIEPLMQTGQPMQ 78
Cdd:COG1561     2 IRSMTGFGRAEAETDGGT--LTVEIRSVNHRYLDLSLRLPRELRALEPEIRELIRKRLSRGkvEVSLSLERAGAAAAALR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503  79 nADFSKAELILAAAREFQEKHHLSGEITISDLLAIPDAITFQAVDLSDEKSMEFLKKLLSSAIDGLIRMRTLEGANLQKD 158
Cdd:COG1561    80 -INEALLKAYLEALKELAEELGLAGPISLDDLLRLPGVLETEEEEEDLEELWAALLAALDEALDDLVAMREREGAALAAD 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1125076503 159 ILERIDTMEAIVNEIQPLAEALPEIQKQRLYKHLKEFDLPVDA 201
Cdd:COG1561   159 LLERLDAIEELVAEIEERAPEVVEAYRERLRERLEELLEGVEL 201
PRK12831 PRK12831
putative oxidoreductase; Provisional
 194-276 9.53e-43

putative oxidoreductase; Provisional


Pssm-ID: 183780 [Multi-domain]  Cd Length: 464  Bit Score: 151.71  E-value: 9.53e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 194 EFDLPVDAVIMSLGTSPNPLIKSTTKGLEVNKKGGIIVNEE-GLTSRQAVYAGGDAVTGAATVILAMGAGKLGAKSIDEY 272
Cdd:PRK12831  380 EFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEEtGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDEY 459


                  ....
gi 1125076503 273 LSAK 276
Cdd:PRK12831  460 LSKK 463
YicC_N pfam03755
YicC-like family, N-terminal region; Family of bacterial proteins. Although poorly ...
 2-157 1.32e-36

YicC-like family, N-terminal region; Family of bacterial proteins. Although poorly characterized, the members of this protein family have been demonstrated to play a role in stationary phase survival. These proteins are not essential during stationary phase.


Pssm-ID: 461041  Cd Length: 155  Bit Score: 127.26  E-value: 1.32e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503   2 KSMTGFGRAEEYSGELQcgFKIEISSINKKQFDLKISMPRELMPLEMELRAFVAERIARG--SLTLRIEPLMQTGQPMQ- 78
Cdd:pfam03755   1 KSMTGFGRAEAEGDGGK--ITVEIKSVNHRYLDLSIRLPRELRFLEPEIRKLIKKRLSRGkvDVFLSLERAEEAAAAVKi 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1125076503  79 NADfsKAELILAAAREFQEKHHLSGEITISDLLAIPDAITFQAVDLSDEKSMEFLKKLLSSAIDGLIRMRTLEGANLQK 157
Cdd:pfam03755  79 NEA--LAKAYLKALKELAEELGLAGDISLSDLLRLPGVLTVEEEEEDEEELWAALLEALEEALDALVEMREREGEALKA 155
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 194-272 1.80e-27

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 109.84  E-value: 1.80e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 194 EFDLPVDAVIMSLGTSPNPLIKSTTKGLEVNKKGGIIVNEE-GLTSRQAVYAGGDAVTGAATVILAMGAGKLGAKSIDEY 272
Cdd:COG0493   355 EFTLPADLVILAIGQTPDPSGLEEELGLELDKRGTIVVDEEtYQTSLPGVFAGGDAVRGPSLVVWAIAEGRKAARAIDRY 434
TIGR00255 TIGR00255
TIGR00255 family protein; The apparent ortholog from Aquifex aeolicus as reported is split ...
 1-194 4.32e-24

TIGR00255 family protein; The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames. [Hypothetical proteins, Conserved]


Pssm-ID: 129357 [Multi-domain]  Cd Length: 291  Bit Score: 98.38  E-value: 4.32e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503   1 MKSMTGFGRAEEYSGELQcgFKIEISSINKKQFDLKISMPRELMPLEMELRAFVAERIARG--SLTLRIEPLMQTgQPMQ 78
Cdd:TIGR00255   2 IRSMTGFARLEKKIDWGS--ASVELKSVNQRFLEFKFRLPEQFRGLELDLRELIRQYITRGkiECFLRVEYKELV-PSEL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503  79 NADFSKAELILAAAREFQEKHHLSGEITISDLLAIPDAITFQAVDLSDEKSMEFLKKLLSSAIDGLIRMRTLEGANLQKD 158
Cdd:TIGR00255  79 FLNNPLAIEAISALRDSKAQTNIEGEINLGDFLRLPGVVIAQEQDLHQDAIYALILGALEEALLDFINMREFEGENLKSD 158

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1125076503 159 ILERIDTMEAIVNEIQPLAEALPEIQKQRLYKHLKE 194
Cdd:TIGR00255 159 IVQRLDLIEREVKKVRSAMPDILQWQRERLKARIED 194
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 197-262 4.80e-07

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 50.01  E-value: 4.80e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1125076503 197 LPVDAVIMSLGTSPNPLIKSTTkGLEVNKKGGIIVNEEGLTSRQAVYAGGD-AVTGAATVILAMGAG 262
Cdd:pfam07992 236 IDADLVVVAIGRRPNTELLEAA-GLELDERGGIVVDEYLRTSVPGIYAAGDcRVGGPELAQNAVAQG 301
 
Name Accession Description Interval E-value
YicC COG1561
Uncharacterized stationary-phase protein YicC, UPF0701 family [Function unknown];
1-201 2.32e-49

Uncharacterized stationary-phase protein YicC, UPF0701 family [Function unknown];


Pssm-ID: 441169 [Multi-domain]  Cd Length: 292  Bit Score: 164.52  E-value: 2.32e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503   1 MKSMTGFGRAEEYSGELQcgFKIEISSINKKQFDLKISMPRELMPLEMELRAFVAERIARG--SLTLRIEPLMQTGQPMQ 78
Cdd:COG1561     2 IRSMTGFGRAEAETDGGT--LTVEIRSVNHRYLDLSLRLPRELRALEPEIRELIRKRLSRGkvEVSLSLERAGAAAAALR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503  79 nADFSKAELILAAAREFQEKHHLSGEITISDLLAIPDAITFQAVDLSDEKSMEFLKKLLSSAIDGLIRMRTLEGANLQKD 158
Cdd:COG1561    80 -INEALLKAYLEALKELAEELGLAGPISLDDLLRLPGVLETEEEEEDLEELWAALLAALDEALDDLVAMREREGAALAAD 158

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1125076503 159 ILERIDTMEAIVNEIQPLAEALPEIQKQRLYKHLKEFDLPVDA 201
Cdd:COG1561   159 LLERLDAIEELVAEIEERAPEVVEAYRERLRERLEELLEGVEL 201
PRK12831 PRK12831
putative oxidoreductase; Provisional
 194-276 9.53e-43

putative oxidoreductase; Provisional


Pssm-ID: 183780 [Multi-domain]  Cd Length: 464  Bit Score: 151.71  E-value: 9.53e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 194 EFDLPVDAVIMSLGTSPNPLIKSTTKGLEVNKKGGIIVNEE-GLTSRQAVYAGGDAVTGAATVILAMGAGKLGAKSIDEY 272
Cdd:PRK12831  380 EFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEEtGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDEY 459


                  ....
gi 1125076503 273 LSAK 276
Cdd:PRK12831  460 LSKK 463
YicC_N pfam03755
YicC-like family, N-terminal region; Family of bacterial proteins. Although poorly ...
 2-157 1.32e-36

YicC-like family, N-terminal region; Family of bacterial proteins. Although poorly characterized, the members of this protein family have been demonstrated to play a role in stationary phase survival. These proteins are not essential during stationary phase.


Pssm-ID: 461041  Cd Length: 155  Bit Score: 127.26  E-value: 1.32e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503   2 KSMTGFGRAEEYSGELQcgFKIEISSINKKQFDLKISMPRELMPLEMELRAFVAERIARG--SLTLRIEPLMQTGQPMQ- 78
Cdd:pfam03755   1 KSMTGFGRAEAEGDGGK--ITVEIKSVNHRYLDLSIRLPRELRFLEPEIRKLIKKRLSRGkvDVFLSLERAEEAAAAVKi 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1125076503  79 NADfsKAELILAAAREFQEKHHLSGEITISDLLAIPDAITFQAVDLSDEKSMEFLKKLLSSAIDGLIRMRTLEGANLQK 157
Cdd:pfam03755  79 NEA--LAKAYLKALKELAEELGLAGDISLSDLLRLPGVLTVEEEEEDEEELWAALLEALEEALDALVEMREREGEALKA 155
PRK12778 PRK12778
bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate ...
 193-276 1.02e-35

bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase;


Pssm-ID: 237200 [Multi-domain]  Cd Length: 752  Bit Score: 135.25  E-value: 1.02e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 193 KEFDLPVDAVIMSLGTSPNPLIKSTTKGLEVNKKGGIIVNEEGLTSRQAVYAGGDAVTGAATVILAMGAGKLGAKSIDEY 272
Cdd:PRK12778  669 STFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDEY 748


                  ....
gi 1125076503 273 LSAK 276
Cdd:PRK12778  749 LSSK 752
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
 193-276 3.62e-35

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 131.07  E-value: 3.62e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 193 KEFDLPVDAVIMSLGTSPNPLIKSTTKGLEVNKKGGIIVNEE-GLTSRQAVYAGGDAVTGAATVILAMGAGKLGAKSIDE 271
Cdd:PRK11749  370 SEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDEtGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHE 449


                  ....*
gi 1125076503 272 YLSAK 276
Cdd:PRK11749  450 YLEGA 454
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
 194-272 1.80e-27

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 109.84  E-value: 1.80e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 194 EFDLPVDAVIMSLGTSPNPLIKSTTKGLEVNKKGGIIVNEE-GLTSRQAVYAGGDAVTGAATVILAMGAGKLGAKSIDEY 272
Cdd:COG0493   355 EFTLPADLVILAIGQTPDPSGLEEELGLELDKRGTIVVDEEtYQTSLPGVFAGGDAVRGPSLVVWAIAEGRKAARAIDRY 434
TIGR00255 TIGR00255
TIGR00255 family protein; The apparent ortholog from Aquifex aeolicus as reported is split ...
 1-194 4.32e-24

TIGR00255 family protein; The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames. [Hypothetical proteins, Conserved]


Pssm-ID: 129357 [Multi-domain]  Cd Length: 291  Bit Score: 98.38  E-value: 4.32e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503   1 MKSMTGFGRAEEYSGELQcgFKIEISSINKKQFDLKISMPRELMPLEMELRAFVAERIARG--SLTLRIEPLMQTgQPMQ 78
Cdd:TIGR00255   2 IRSMTGFARLEKKIDWGS--ASVELKSVNQRFLEFKFRLPEQFRGLELDLRELIRQYITRGkiECFLRVEYKELV-PSEL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503  79 NADFSKAELILAAAREFQEKHHLSGEITISDLLAIPDAITFQAVDLSDEKSMEFLKKLLSSAIDGLIRMRTLEGANLQKD 158
Cdd:TIGR00255  79 FLNNPLAIEAISALRDSKAQTNIEGEINLGDFLRLPGVVIAQEQDLHQDAIYALILGALEEALLDFINMREFEGENLKSD 158

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1125076503 159 ILERIDTMEAIVNEIQPLAEALPEIQKQRLYKHLKE 194
Cdd:TIGR00255 159 IVQRLDLIEREVKKVRSAMPDILQWQRERLKARIED 194
PRK12775 PRK12775
putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin ...
 181-274 4.76e-21

putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional


Pssm-ID: 183738 [Multi-domain]  Cd Length: 1006  Bit Score: 92.70  E-value: 4.76e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503  181 PEIQKQRLYKHLKEF-DLPVDAVIMSLGTSPNPLIKSTTKGLEVNKKGGIIVNEEGLTSRQA-----VYAGGDAVTGAAT 254
Cdd:PRK12775   656 PDEKGRRKPMPTGEFkDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQStnlpgVFAGGDIVTGGAT 735

                           90       100
                   ....*....|....*....|
gi 1125076503  255 VILAMGAGKLGAKSIDEYLS 274
Cdd:PRK12775   736 VILAMGAGRRAARSIATYLR 755
PRK12770 PRK12770
putative glutamate synthase subunit beta; Provisional
 194-276 4.60e-17

putative glutamate synthase subunit beta; Provisional


Pssm-ID: 237197 [Multi-domain]  Cd Length: 352  Bit Score: 79.65  E-value: 4.60e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 194 EFDLPVDAVIMSLGTSPNPLIKSTTKGLEVNKKGGIIVNEEGLTSRQAVYAGGDAVTGAATVILAMGAGKLGAKSIDEYL 273
Cdd:PRK12770  270 EFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWL 349


                  ...
gi 1125076503 274 SAK 276
Cdd:PRK12770  350 DLK 352
PRK12779 PRK12779
putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; ...
 197-269 9.22e-14

putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional


Pssm-ID: 183740 [Multi-domain]  Cd Length: 944  Bit Score: 71.02  E-value: 9.22e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1125076503 197 LPVDAVIMSLGTSPNPLIKSTTKGLEVNKKGGIIVNEEG-LTSRQAVYAGGDAVTGAATVILAMGAGKLGAKSI 269
Cdd:PRK12779  549 VPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSqRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEI 622
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 194-276 2.25e-12

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 66.82  E-value: 2.25e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 194 EFDLPVDAVIMSLGTSPNplikstTKGLE-----VNKKGGIIVNEEGL-TSRQAVYAGGDAVTGAATVILAMGAGKLGAK 267
Cdd:PRK12771  364 EETLEADLVVLAIGQDID------SAGLEsvpgvEVGRGVVQVDPNFMmTGRPGVFAGGDMVPGPRTVTTAIGHGKKAAR 437


                  ....*....
gi 1125076503 268 SIDEYLSAK 276
Cdd:PRK12771  438 NIDAFLGGE 446
PRK12814 PRK12814
putative NADPH-dependent glutamate synthase small subunit; Provisional
 194-276 1.98e-11

putative NADPH-dependent glutamate synthase small subunit; Provisional


Pssm-ID: 139246 [Multi-domain]  Cd Length: 652  Bit Score: 63.98  E-value: 1.98e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 194 EFDLPVDAVIMSLGTSPNPLIkSTTKGLEVNKKGGIIVNEEGLTSRQA-VYAGGDAVTGAATVILAMGAGKLGAKSIDEY 272
Cdd:PRK12814  421 EFTLQADTVISAIGQQVDPPI-AEAAGIGTSRNGTVKVDPETLQTSVAgVFAGGDCVTGADIAINAVEQGKRAAHAIDLF 499


                  ....
gi 1125076503 273 LSAK 276
Cdd:PRK12814  500 LNGK 503
PRK12769 PRK12769
putative oxidoreductase Fe-S binding subunit; Reviewed
 194-276 8.86e-11

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183733 [Multi-domain]  Cd Length: 654  Bit Score: 62.07  E-value: 8.86e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 194 EFDLPVDAVIMSLGTSPNPLIKSTTKGLEVNKKGGIIVNEEG----LTSRQAVYAGGDAVTGAATVILAMGAGKLGAKSI 269
Cdd:PRK12769  568 EFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESqyryQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGI 647


                  ....*..
gi 1125076503 270 DEYLSAK 276
Cdd:PRK12769  648 IDWLGVK 654
gltD PRK12810
glutamate synthase subunit beta; Reviewed
 194-273 1.14e-10

glutamate synthase subunit beta; Reviewed


Pssm-ID: 237213 [Multi-domain]  Cd Length: 471  Bit Score: 61.33  E-value: 1.14e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 194 EFDLPVDAVIMSLGTSPNPLIKSTTKGLEVNKKGGIIVNEEGL-TSRQAVYAGGDAVTGAATVILAMGAGKLGAKSIDEY 272
Cdd:PRK12810  384 EFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYqTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAY 463


                  .
gi 1125076503 273 L 273
Cdd:PRK12810  464 L 464
PRK12809 PRK12809
putative oxidoreductase Fe-S binding subunit; Reviewed
 194-269 1.73e-09

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183762 [Multi-domain]  Cd Length: 639  Bit Score: 58.11  E-value: 1.73e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 194 EFDLPVDAVIMSLGTSPNPLIKSTTKGLEVNKKGGIIVNEEGL----TSRQAVYAGGDAVTGAATVILAMGAGKLGAKSI 269
Cdd:PRK12809  551 EFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYlptqTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDM 630
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
194-276 2.79e-09

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 56.67  E-value: 2.79e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 194 EFDLPVDAVIMSLGTSPNP-LIKSTtkGLEVNKKGGIIVNEEGLTSRQAVYAGGDAVTG----AATvilAMGAGKLGAKS 268
Cdd:COG0492   222 EKELEVDGVFVAIGLKPNTeLLKGL--GLELDEDGYIVVDEDMETSVPGVFAAGDVRDYkyrqAAT---AAGEGAIAALS 296


                  ....*...
gi 1125076503 269 IDEYLSAK 276
Cdd:COG0492   297 AARYLEPL 304
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
 197-250 1.78e-07

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 51.35  E-value: 1.78e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1125076503 197 LPVDAVIMSLGTSPN-PLIKSTtkGLEVNKKGGIIVNEEGLTSRQAVYAGGDAVT 250
Cdd:COG0446   207 IPADLVVVAPGVRPNtELAKDA--GLALGERGWIKVDETLQTSDPDVYAAGDCAE 259
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 197-262 4.80e-07

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 50.01  E-value: 4.80e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1125076503 197 LPVDAVIMSLGTSPNPLIKSTTkGLEVNKKGGIIVNEEGLTSRQAVYAGGD-AVTGAATVILAMGAG 262
Cdd:pfam07992 236 IDADLVVVAIGRRPNTELLEAA-GLELDERGGIVVDEYLRTSVPGIYAAGDcRVGGPELAQNAVAQG 301
PRK09564 PRK09564
coenzyme A disulfide reductase; Reviewed
 199-265 5.38e-07

coenzyme A disulfide reductase; Reviewed


Pssm-ID: 181958 [Multi-domain]  Cd Length: 444  Bit Score: 50.42  E-value: 5.38e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1125076503 199 VDAVIMSLGTSPNP-LIKSTtkGLEVNKKGGIIVNEEGLTSRQAVYAGGD------AVTGAATVI-LAMGAGKLG 265
Cdd:PRK09564  235 ADVVIVATGVKPNTeFLEDT--GLKTLKNGAIIVDEYGETSIENIYAAGDcatiynIVSNKNVYVpLATTANKLG 307
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
197-247 1.01e-06

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 49.37  E-value: 1.01e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1125076503 197 LPVDAVIMSLGTSPN-PLIKSTtkGLEVNkkGGIIVNEEGLTSRQAVYAGGD 247
Cdd:COG1251   227 LPADLVVVAIGVRPNtELARAA--GLAVD--RGIVVDDYLRTSDPDIYAAGD 274
PRK13984 PRK13984
putative oxidoreductase; Provisional
 197-276 1.15e-05

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 46.30  E-value: 1.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 197 LPVDAVIMSLGTSPNP--LIKSTTKGLEVNKkGGIIVNEEGLTSRQAVYAGGDAVTGaATVILAMGAGKLGAKSIDEYLS 274
Cdd:PRK13984  525 VEADMVVEAIGQAPDYsyLPEELKSKLEFVR-GRILTNEYGQTSIPWLFAGGDIVHG-PDIIHGVADGYWAAEGIDMYLR 602


                  ..
gi 1125076503 275 AK 276
Cdd:PRK13984  603 KQ 604
PRK13512 PRK13512
coenzyme A disulfide reductase; Provisional
 200-276 2.47e-05

coenzyme A disulfide reductase; Provisional


Pssm-ID: 184103 [Multi-domain]  Cd Length: 438  Bit Score: 45.16  E-value: 2.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 200 DAVIMSLGTSPNP-LIKSTtkGLEVNKKGGIIVNEEGLTSRQAVYAGGDAVTG-------AATVILAMGAGKlGAKSIDE 271
Cdd:PRK13512  231 DMIIEGVGTHPNSkFIESS--NIKLDDKGFIPVNDKFETNVPNIYAIGDIITShyrhvdlPASVPLAWGAHR-AASIVAE 307


                  ....*
gi 1125076503 272 YLSAK 276
Cdd:PRK13512  308 QIAGN 312
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 197-251 7.00e-04

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 40.84  E-value: 7.00e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1125076503 197 LPVDAVIMSLGTSPNplikstTKGL-------EVNKKGGIIVNEEGLTSRQAVYAGGDaVTG 251
Cdd:COG1249   255 VEADKVLVATGRRPN------TDGLgleaagvELDERGGIKVDEYLRTSVPGIYAIGD-VTG 309
PRK15317 PRK15317
alkyl hydroperoxide reductase subunit F; Provisional
 194-273 7.43e-04

alkyl hydroperoxide reductase subunit F; Provisional


Pssm-ID: 237942 [Multi-domain]  Cd Length: 517  Bit Score: 40.53  E-value: 7.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 194 EFDLPVDAVIMSLGTSPNP-LIKSTtkgLEVNKKGGIIVNEEGLTSRQAVYAGGDAVTGA-ATVILAMGAGKLGAKSIDE 271
Cdd:PRK15317  433 EHHLELEGVFVQIGLVPNTeWLKGT---VELNRRGEIIVDARGATSVPGVFAAGDCTTVPyKQIIIAMGEGAKAALSAFD 509


                  ..
gi 1125076503 272 YL 273
Cdd:PRK15317  510 YL 511
PRK06116 PRK06116
glutathione reductase; Validated
 197-252 1.17e-03

glutathione reductase; Validated


Pssm-ID: 235701 [Multi-domain]  Cd Length: 450  Bit Score: 40.14  E-value: 1.17e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1125076503 197 LPVDAVIMSLGTSPNplikstTKGL-------EVNKKGGIIVNEEGLTSRQAVYAGGDaVTGA 252
Cdd:PRK06116  252 LTVDCLIWAIGREPN------TDGLglenagvKLNEKGYIIVDEYQNTNVPGIYAVGD-VTGR 307
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
197-249 4.43e-03

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 38.19  E-value: 4.43e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1125076503 197 LPVDAVIMSLGTSPNPLIKSTtkGLEVNKKGGIIVNEEgLTSRQA--VYAGGDAV 249
Cdd:COG1252   242 IPADTVIWAAGVKAPPLLADL--GLPTDRRGRVLVDPT-LQVPGHpnVFAIGDCA 293
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 193-251 4.66e-03

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 38.23  E-value: 4.66e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125076503 193 KEFDLPVDAVIMSLGTSPN-PLIKSTTKGLEVNKKGGIIVNEEGLTSRQAVYAGGDAVTG 251
Cdd:PRK06292  251 KTETIEADYVLVATGRRPNtDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGK 310
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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