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Conserved domains on  [gi|1124986745|gb|OKZ55829|]
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single-stranded DNA-binding protein, partial [Clostridiales bacterium 59_14]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ERF super family cl04500
ERF superfamily; The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF ...
 37-95 2.07e-05

ERF superfamily; The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to ERF.


The actual alignment was detected with superfamily member pfam04404:

Pssm-ID: 427926  Cd Length: 153  Bit Score: 42.72  E-value: 2.07e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1124986745  37 LTIRWINLDNDDETLEAVVHA-----LGWNDDPAKAKGAAHTYALKYYLFEKFSIDQGEDDPDN 95
Cdd:pfam04404  65 VTVTTTFVDAETGEKESIPAVapedkNKKGSDFAQGTGSAITYARRYALLGLFGIDTDKDPDAT 128
 
Name Accession Description Interval E-value
ERF pfam04404
ERF superfamily; The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF ...
 37-95 2.07e-05

ERF superfamily; The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to ERF.


Pssm-ID: 427926  Cd Length: 153  Bit Score: 42.72  E-value: 2.07e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1124986745  37 LTIRWINLDNDDETLEAVVHA-----LGWNDDPAKAKGAAHTYALKYYLFEKFSIDQGEDDPDN 95
Cdd:pfam04404  65 VTVTTTFVDAETGEKESIPAVapedkNKKGSDFAQGTGSAITYARRYALLGLFGIDTDKDPDAT 128
 
Name Accession Description Interval E-value
ERF pfam04404
ERF superfamily; The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF ...
 37-95 2.07e-05

ERF superfamily; The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to ERF.


Pssm-ID: 427926  Cd Length: 153  Bit Score: 42.72  E-value: 2.07e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1124986745  37 LTIRWINLDNDDETLEAVVHA-----LGWNDDPAKAKGAAHTYALKYYLFEKFSIDQGEDDPDN 95
Cdd:pfam04404  65 VTVTTTFVDAETGEKESIPAVapedkNKKGSDFAQGTGSAITYARRYALLGLFGIDTDKDPDAT 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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