NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1124884|gb|AAC42092|]
View 

small proline-rich protein, partial [Rattus norvegicus]

Protein Classification

Cornifin domain-containing protein( domain architecture ID 12034798)

Cornifin domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 17-150 4.18e-51

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


:

Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 159.45  E-value: 4.18e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884     17 HQHEVKQPCQPPPQEPCAPKTKEPCHP-IPEPCNPKVPEPCQPKVPEPCQPKVPEPCQPKVPEPCQPKVPEPCQPKVPEP 95
Cdd:pfam02389   1 HQQQVKQPCQPPPQEPCVPTTKEPCHSkVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEP 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1124884     96 CQPKVPEPCHPKAPEPCHPVVPEPCQPVAPEPCQPVVPEPCPPTVTPSPYQQKTK 150
Cdd:pfam02389  81 CSPKVPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPSTVTPGPAQQKTK 135
 
Name Accession Description Interval E-value
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 17-150 4.18e-51

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 159.45  E-value: 4.18e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884     17 HQHEVKQPCQPPPQEPCAPKTKEPCHP-IPEPCNPKVPEPCQPKVPEPCQPKVPEPCQPKVPEPCQPKVPEPCQPKVPEP 95
Cdd:pfam02389   1 HQQQVKQPCQPPPQEPCVPTTKEPCHSkVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEP 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1124884     96 CQPKVPEPCHPKAPEPCHPVVPEPCQPVAPEPCQPVVPEPCPPTVTPSPYQQKTK 150
Cdd:pfam02389  81 CSPKVPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPSTVTPGPAQQKTK 135
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
54-146 3.61e-14

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 68.67  E-value: 3.61e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884    54 EPCQPKVPEPCQPKVPEPCqpkVPEPCQpkvPEPCQPKVPEPCqpkVPEPCHPKapepchPVVPEPCQPVAPEPCQPVVP 133
Cdd:PRK15313 559 EPDEPIIPDPVDPVIPDPV---IPDPVD---PDPVDPVIPDPV---IPDPVDPD------PVDPEPVDPVIPDPTIPDIG 623

                         90
                 ....*....|...
gi 1124884   134 EPCPPTVTPSPYQ 146
Cdd:PRK15313 624 QSDTPPITEHQFR 636
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 105-144 2.68e-04

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 39.93  E-value: 2.68e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1124884   105 HPKAPEPCHPVVPEPCQPVAPEPCQPVVPEPCP-PTVTPSP 144
Cdd:NF033845 542 NPKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPdPEPSPDP 582
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 59-134 4.09e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 36.53  E-value: 4.09e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1124884    59 KVPE-PCQPKVPEPC-QPKVPEPcQPKVPEPcQPKVPEPCQPKVPEPCHPKAPEPCHPVVPEpcQPVAPE-PCQPVVPE 134
Cdd:NF033838 411 KVKEkPAEQPQPAPApQPEKPAP-KPEKPAE-QPKAEKPADQQAEEDYARRSEEEYNRLTQQ--QPPKTEkPAQPSTPK 485
 
Name Accession Description Interval E-value
Cornifin pfam02389
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ...
 17-150 4.18e-51

Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high.


Pssm-ID: 280537 [Multi-domain]  Cd Length: 135  Bit Score: 159.45  E-value: 4.18e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884     17 HQHEVKQPCQPPPQEPCAPKTKEPCHP-IPEPCNPKVPEPCQPKVPEPCQPKVPEPCQPKVPEPCQPKVPEPCQPKVPEP 95
Cdd:pfam02389   1 HQQQVKQPCQPPPQEPCVPTTKEPCHSkVPEPCNPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCCPKVPEPCYPKVPEP 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1124884     96 CQPKVPEPCHPKAPEPCHPVVPEPCQPVAPEPCQPVVPEPCPPTVTPSPYQQKTK 150
Cdd:pfam02389  81 CSPKVPEPCHPKAPEPCHPKVPEPCYPKAPEPCQPKVPEPCPSTVTPGPAQQKTK 135
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
54-146 3.61e-14

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 68.67  E-value: 3.61e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884    54 EPCQPKVPEPCQPKVPEPCqpkVPEPCQpkvPEPCQPKVPEPCqpkVPEPCHPKapepchPVVPEPCQPVAPEPCQPVVP 133
Cdd:PRK15313 559 EPDEPIIPDPVDPVIPDPV---IPDPVD---PDPVDPVIPDPV---IPDPVDPD------PVDPEPVDPVIPDPTIPDIG 623

                         90
                 ....*....|...
gi 1124884   134 EPCPPTVTPSPYQ 146
Cdd:PRK15313 624 QSDTPPITEHQFR 636
PRK15313 PRK15313
intestinal colonization autotransporter adhesin MisL;
35-110 7.43e-09

intestinal colonization autotransporter adhesin MisL;


Pssm-ID: 237940 [Multi-domain]  Cd Length: 955  Bit Score: 53.26  E-value: 7.43e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1124884    35 PKTKEPCHP-IPEPC--NPKVPEPCQPKVPEPCQPKVPEPcQPKVPEPCQPKVPEPCQPKVPEPCQPKVPEpcHPKAPE 110
Cdd:PRK15313 563 PIIPDPVDPvIPDPVipDPVDPDPVDPVIPDPVIPDPVDP-DPVDPEPVDPVIPDPTIPDIGQSDTPPITE--HQFRPE 638
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 40-142 6.64e-05

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.99  E-value: 6.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884     40 PCHPIPEPCNPKVPEPCQPKVPEPC--QPKVPEPCQPKVPEPCQPKVPEP--CQPKVPEPCQPKVPEPCHPKAPEPCH-- 113
Cdd:PRK10263  740 PHEPLFTPIVEPVQQPQQPVAPQQQyqQPQQPVAPQPQYQQPQQPVAPQPqyQQPQQPVAPQPQYQQPQQPVAPQPQYqq 819

                          90       100
                  ....*....|....*....|....*....
gi 1124884    114 PVVPEPCQPVAPEPCQPVVPEPCPPTVTP 142
Cdd:PRK10263  820 PQQPVAPQPQYQQPQQPVAPQPQDTLLHP 848
PHA03247 PHA03247
large tegument protein UL36; Provisional
 43-142 9.66e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 9.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884     43 PIPEPCNPKVPEPCQPKVPEPCQPKVPEPCQPKVPEPCQPkvPEPCQPKVPEPCQPKVPEPCHPKaPEPCHPVVPEPCQP 122
Cdd:PHA03247 2866 PPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQP--ERPPQPQAPPPPQPQPQPPPPPQ-PQPPPPPPPRPQPP 2942

                          90       100
                  ....*....|....*....|
gi 1124884    123 VAPEPCQPVVPEPCPPTVTP 142
Cdd:PHA03247 2943 LAPTTDPAGAGEPSGAVPQP 2962
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 42-144 9.77e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 41.24  E-value: 9.77e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884    42 HPIPEPCNPKVPEPCQPKVPEPcQPKVPEPCQPKVPEPCQPKVPEPCQPKVPEPCQPKvPEPCHPKAPEPCHPVVPEPCQ 121
Cdd:PRK14951 392 APVAQAAAAPAPAAAPAAAASA-PAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALA-PAPPAQAAPETVAIPVRVAPE 469

                         90       100
                 ....*....|....*....|...
gi 1124884   122 PVAPEPCQPVVPEPCPPTVTPSP 144
Cdd:PRK14951 470 PAVASAAPAPAAAPAAARLTPTE 492
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 58-151 1.14e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.22  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884     58 PKVPEPCQPKVPEPCQPKVPEPCQPKVPEPC--QPKVPEPCQPKVPEPCHPKAPEPCHPvvpEPCQPVAPepcQPVVPEP 135
Cdd:PRK10263  747 PIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQyqQPQQPVAPQPQYQQPQQPVAPQPQYQ---QPQQPVAP---QPQYQQP 820

                          90
                  ....*....|....*.
gi 1124884    136 CPPTVTPSPYQQKTKQ 151
Cdd:PRK10263  821 QQPVAPQPQYQQPQQP 836
PHA03247 PHA03247
large tegument protein UL36; Provisional
 35-149 1.82e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 1.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884     35 PKTKEPCHPIPEPCNPKVPEPCQPKVPEPCQP--KVPEPCQPKVPEPCQPKVPEPCQPKVPEPCQPKVPEPCHPKAPEPC 112
Cdd:PHA03247 2840 PPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPaaKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQP 2919

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1124884    113 HPVVPEPCQPVAPEPCQPVVPEPCPPTVTPSPYQQKT 149
Cdd:PHA03247 2920 QPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPS 2956
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 55-147 1.83e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.47  E-value: 1.83e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884    55 PCQPKVPEPCQPKVPEPCQPKVPEPCQPKV-PEPCQPKVPEPCQPKVPEPCHPKAPEPCHPVVPEPCQPVAPEPCQPVvP 133
Cdd:PRK14951 381 PARPEAAAPAAAPVAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPE-T 459

                         90
                 ....*....|....
gi 1124884   134 EPCPPTVTPSPYQQ 147
Cdd:PRK14951 460 VAIPVRVAPEPAVA 473
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 47-149 2.27e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.08  E-value: 2.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884    47 PCNPKVPEPCQPKVPEPCQPKVPEPCQPKV-PEPCQPKVPEPCQPKVPEPCQPKVPEPCHPKAPEPCHPVVPEPCQPVAP 125
Cdd:PRK14951 381 PARPEAAAPAAAPVAQAAAAPAPAAAPAAAaSAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETV 460

                         90       100
                 ....*....|....*....|....*.
gi 1124884   126 EPCQPVVPEPCPPT--VTPSPYQQKT 149
Cdd:PRK14951 461 AIPVRVAPEPAVASaaPAPAAAPAAA 486
MSCRAMM_ClfB NF033845
MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial ...
 105-144 2.68e-04

MSCRAMM family adhesin clumping factor ClfB; Clumping factor B is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.


Pssm-ID: 468203 [Multi-domain]  Cd Length: 871  Bit Score: 39.93  E-value: 2.68e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1124884   105 HPKAPEPCHPVVPEPCQPVAPEPCQPVVPEPCP-PTVTPSP 144
Cdd:NF033845 542 NPKDPTPGPPVDPEPSPEPEPEPTPDPEPSPDPdPEPSPDP 582
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 21-144 5.70e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 38.91  E-value: 5.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884     21 VKQPCQPPPQEPCAPKTKEPCHPIPEPCNPKVPEPCQPKVPEPCQPKVPEPCQPKVPEPCQPKVPEP--CQPKVPEPCQP 98
Cdd:PRK10263  749 VEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPqyQQPQQPVAPQP 828

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1124884     99 KVPEPCHPKAPEPCHPVV-PEPCQPVAPEPCQ-PVVPEPCPPTVTPSP 144
Cdd:PRK10263  829 QYQQPQQPVAPQPQDTLLhPLLMRNGDSRPLHkPTTPLPSLDLLTPPP 876
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 66-144 2.29e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 37.10  E-value: 2.29e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1124884    66 PKVPEPCQPKVPEPcQPKVPEPCQPKVPEPCQPKVPEPCHPKaPEPCHPVVPEPCQPVAPEPCQPVVPEPCPPTVTPSP 144
Cdd:PRK14950 363 VPAPQPAKPTAAAP-SPVRPTPAPSTRPKAAAAANIPPKEPV-RETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVD 439
PHA03247 PHA03247
large tegument protein UL36; Provisional
 34-144 2.45e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 37.23  E-value: 2.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884     34 APKTKEPCHPIPEPCNPKVPEPCQPKVPEPCQPKVPEPCQPKVPEPC--QPKVPEPCQPKVPEPCQPKVPEPCHPKAPEP 111
Cdd:PHA03247 2876 AAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQppPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1124884    112 cHPVVPEP----CQPVAPEPCQPVVPEPCPPTVTPSP 144
Cdd:PHA03247 2956 -SGAVPQPwlgaLVPGRVAVPRFRVPQPAPSREAPAS 2991
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 50-138 2.74e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 37.10  E-value: 2.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884    50 PKVPEPCQPKVPEPcQPKVPEPCQPKVPEPCQPKVPEPCQPKVPEPCQPKVPEPCHPKAPEPCHPVVPEPCQPVAPEPCQ 129
Cdd:PRK14950 363 VPAPQPAKPTAAAP-SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEK 441


                 ....*....
gi 1124884   130 PVVPEPCPP 138
Cdd:PRK14950 442 PKYTPPAPP 450
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 58-144 2.82e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 37.10  E-value: 2.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884    58 PKVPEPCQPKVPEPcQPKVPEPCQPKVPEPCQPKVPEPcQPKVPEPCHPK--APEPCHPVVPEPcQPVAPEPCQPVVPEP 135
Cdd:PRK14950 363 VPAPQPAKPTAAAP-SPVRPTPAPSTRPKAAAAANIPP-KEPVRETATPPpvPPRPVAPPVPHT-PESAPKLTRAAIPVD 439


                 ....*....
gi 1124884   136 CPPTVTPSP 144
Cdd:PRK14950 440 EKPKYTPPA 448
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 35-150 3.33e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 36.99  E-value: 3.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884     35 PKTKEPC-HPIPEPCNPkVPEPCQPKVP------EPCQPKVPEPCQPKVPEPCQPK--------------VPEPCQPKVP 93
Cdd:PRK10263  366 PQTGEPViAPAPEGYPQ-QSQYAQPAVQyneplqQPVQPQQPYYAPAAEQPAQQPYyapapeqpaqqpyyAPAPEQPVAG 444

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1124884     94 EPCQPKVPEPchPKAPEPCHPVVPEPCQPVAPEPC-QPVVPEPCPPTVTPSPYQQKTK 150
Cdd:PRK10263  445 NAWQAEEQQS--TFAPQSTYQTEQTYQQPAAQEPLyQQPQPVEQQPVVEPEPVVEETK 500
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 59-134 4.09e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 36.53  E-value: 4.09e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1124884    59 KVPE-PCQPKVPEPC-QPKVPEPcQPKVPEPcQPKVPEPCQPKVPEPCHPKAPEPCHPVVPEpcQPVAPE-PCQPVVPE 134
Cdd:NF033838 411 KVKEkPAEQPQPAPApQPEKPAP-KPEKPAE-QPKAEKPADQQAEEDYARRSEEEYNRLTQQ--QPPKTEkPAQPSTPK 485
PHA03247 PHA03247
large tegument protein UL36; Provisional
 53-145 6.90e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 36.07  E-value: 6.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884     53 PEPCQPKVPEPCQPKVPEPCQPKVPEPCQP-KVPEPCQPKVPEPCQPKVPEPcHPKAPEPCHPVVPEPCQPVAPEPCQP- 130
Cdd:PHA03247 2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESfALPPDQPERPPQPQAPPPPQP-QPQPPPPPQPQPPPPPPPRPQPPLAPt 2946

                          90
                  ....*....|....*..
gi 1124884    131 --VVPEPCPPTVTPSPY 145
Cdd:PHA03247 2947 tdPAGAGEPSGAVPQPW 2963
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 61-142 7.55e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 35.64  E-value: 7.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884     61 PEPCQPKVPEPCQPKVPEPCQPKVPEPCQPKVPEPCQPKVPEPCHPKAPEPCHPVVPEPCQPVAPEPCQPVVPEPCPPTV 140
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117


                  ..
gi 1124884    141 TP 142
Cdd:PRK12270  118 TP 119
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 1-95 8.37e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 35.83  E-value: 8.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124884      1 MSSQQQKQPCTVPPQLHQHEVKQPCQPPPQEPCAPKTKEPCHPIPEPCNPKVPEPCQPKVPEPCQPKVPEPCQPKVPepc 80
Cdd:PRK10263  750 EPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP--- 826

                          90
                  ....*....|....*
gi 1124884     81 QPKVPEPCQPKVPEP 95
Cdd:PRK10263  827 QPQYQQPQQPVAPQP 841
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH